ATP-dependent helicase
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 AT2G46020 |
| fragaria_vesca | FvH4_7g14720 |
| malus_domestica | MD01G1065800.v1.1 MD07G1134800.v1.1 |
| prunus_persica | Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 Prupe.2G172900_v2.0.a1 |
| pyrus_communis | pycom01g09500 pycom01g09510 pycom07g13210 |
| rosa_chinensis | RchiOBHm_Chr1g0356661 |
| rosa_laevigata | RLG00000028089 |
| rosa_multiflora | Rmu_sc0013188.1_g000005 Rmu_sc0037764.1_g000001 |
| rosa_roxburghii | Rroxscaffold_4G00299450 |
| rosa_rugosa | Rorug01G0250400 |
| rosa_samantha | Rh1AG264300 Rh1BG231900 Rh1CG247900 Rh1DG259500 |
| rosa_wichuraiana | Rw1G023380 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 637 |
| AatII | GACGTC | 2 cut(s) | 74, 2160 |
| Acc36I | ACCTGC | 1 cut(s) | 637 |
| AccB1I | GGYRCC | 2 cut(s) | 580, 760 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1270 |
| AccI | GTMKAC | 1 cut(s) | 113 |
| AccII | CGCG | 1 cut(s) | 2541 |
| AcoI | YGGCCR | 4 cut(s) | 34, 55, 105, 781 |
| AcsI | RAATTY | 5 cut(s) | 613, 1294, 2248, 2600, 3711 |
| AcuI | CTGAAG | 5 cut(s) | 255, 413, 684, 2669, 3885 |
| AcvI | CACGTG | 1 cut(s) | 3473 |
| AcyI | GRCGYC | 3 cut(s) | 71, 116, 2157 |
| AdeI | CACNNNGTG | 1 cut(s) | 1412 |
| AfaI | GTAC | 4 cut(s) | 2007, 2672, 3147, 3917 |
| AfeI | AGCGCT | 1 cut(s) | 1779 |
| AfiI | CCNNNNNNNGG | 7 cut(s) | 43, 125, 400, 518, 1270, 1379, 1601 |
| AflII | CTTAAG | 2 cut(s) | 2338, 3046 |
| AflIII | ACRYGT | 1 cut(s) | 741 |
| AhlI | ACTAGT | 1 cut(s) | 2699 |
| AjnI | CCWGG | 6 cut(s) | 360, 865, 1263, 1594, 2707, 4041 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 3117, 3149 |
| Alw21I | GWGCWC | 2 cut(s) | 846, 3763 |
| Alw26I | GTCTC | 5 cut(s) | 676, 774, 2870, 2949, 3045 |
| Alw44I | GTGCAC | 1 cut(s) | 3759 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 674, 1465, 2849 |
| Aor51HI | AGCGCT | 1 cut(s) | 1779 |
| ApaI | GGGCCC | 1 cut(s) | 50 |
| ApaLI | GTGCAC | 1 cut(s) | 3759 |
| ApoI | RAATTY | 5 cut(s) | 613, 1294, 2248, 2600, 3711 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 1225, 2769, 3462 |
| AspA2I | CCTAGG | 1 cut(s) | 1193 |
| AspLEI | GCGC | 2 cut(s) | 1780, 3504 |
| AspS9I | GGNCC | 9 cut(s) | 46, 47, 509, 652, 1145, 2048, 2271, 2532, 3197 |
| AsuC2I | CCSGG | 3 cut(s) | 38, 50, 735 |
| AsuHPI | GGTGA | 5 cut(s) | 957, 1526, 1801, 2116, 3689 |
| AsuII | TTCGAA | 1 cut(s) | 2606 |
| AvaII | GGWCC | 1 cut(s) | 2048 |
| AvrII | CCTAGG | 1 cut(s) | 1193 |
| BaeGI | GKGCMC | 4 cut(s) | 33, 50, 958, 3763 |
| BalI | TGGCCA | 1 cut(s) | 783 |
| BamHI | GGATCC | 3 cut(s) | 3859, 4038, 4054 |
| BanI | GGYRCC | 2 cut(s) | 580, 760 |
| BanII | GRGCYC | 1 cut(s) | 50 |
| BauI | CACGAG | 2 cut(s) | 1026, 3356 |
| BbrPI | CACGTG | 1 cut(s) | 3473 |
| BbsI | GAAGAC | 3 cut(s) | 84, 597, 1806 |
| Bbv12I | GWGCWC | 2 cut(s) | 846, 3763 |
| BbvCI | CCTCAGC | 1 cut(s) | 480 |
| BceAI | ACGGC | 6 cut(s) | 42, 49, 73, 92, 1159, 2904 |
| BcgI | CGANNNNNNTGC | 6 cut(s) | 582, 616, 1316, 1350, 3939, 3973 |
| BciT130I | CCWGG | 6 cut(s) | 362, 867, 1265, 1596, 2709, 4043 |
| BciVI | GTATCC | 1 cut(s) | 2714 |
| BclI | TGATCA | 2 cut(s) | 2353, 2620 |
| BcnI | CCSGG | 3 cut(s) | 38, 50, 735 |
| BcoDI | GTCTC | 5 cut(s) | 676, 774, 2870, 2949, 3045 |
| BcuI | ACTAGT | 1 cut(s) | 2699 |
| BfmI | CTRYAG | 2 cut(s) | 1365, 2841 |
| BfoI | RGCGCY | 2 cut(s) | 1781, 3505 |
| BfrI | CTTAAG | 2 cut(s) | 2338, 3046 |
| BfuAI | ACCTGC | 1 cut(s) | 637 |
| BfuI | GTATCC | 1 cut(s) | 2714 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 54, 1195, 2389 |
| BglII | AGATCT | 2 cut(s) | 2164, 3774 |
| BlnI | CCTAGG | 1 cut(s) | 1193 |
| Bme1390I | CCNGG | 9 cut(s) | 38, 50, 362, 735, 867, 1265, 1596, 2709, 4043 |
| Bme18I | GGWCC | 1 cut(s) | 2048 |
| BmgT120I | GGNCC | 9 cut(s) | 46, 47, 509, 652, 1145, 2048, 2271, 2532, 3197 |
| BmrFI | CCNGG | 9 cut(s) | 38, 50, 362, 735, 867, 1265, 1596, 2709, 4043 |
| BmrI | ACTGGG | 2 cut(s) | 134, 2539 |
| BmuI | ACTGGG | 2 cut(s) | 134, 2539 |
| BpiI | GAAGAC | 3 cut(s) | 84, 597, 1806 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1009, 1041 |
| BpmI | CTGGAG | 3 cut(s) | 286, 987, 1617 |
| Bpu10I | CCTNAGC | 3 cut(s) | 480, 3731, 3878 |
| Bpu14I | TTCGAA | 1 cut(s) | 2606 |
| BpuEI | CTTGAG | 5 cut(s) | 860, 1490, 1515, 1586, 3309 |
| BpuMI | CCSGG | 3 cut(s) | 38, 50, 735 |
| Bsa29I | ATCGAT | 1 cut(s) | 2929 |
| BsaAI | YACGTR | 3 cut(s) | 1288, 2558, 3473 |
| BsaBI | GATNNNNATC | 3 cut(s) | 2358, 3486, 3779 |
| BsaHI | GRCGYC | 3 cut(s) | 71, 116, 2157 |
| BsaI | GGTCTC | 1 cut(s) | 2870 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 985, 1015, 2898, 2928 |
| Bsc4I | CCNNNNNNNGG | 7 cut(s) | 43, 125, 400, 518, 1270, 1379, 1601 |
| Bse3DI | GCAATG | 4 cut(s) | 2385, 2475, 3080, 3524 |
| Bse8I | GATNNNNATC | 3 cut(s) | 2358, 3486, 3779 |
| BseBI | CCWGG | 6 cut(s) | 362, 867, 1265, 1596, 2709, 4043 |
| BseCI | ATCGAT | 1 cut(s) | 2929 |
| BseJI | GATNNNNATC | 3 cut(s) | 2358, 3486, 3779 |
| BseLI | CCNNNNNNNGG | 7 cut(s) | 43, 125, 400, 518, 1270, 1379, 1601 |
| BseMI | GCAATG | 4 cut(s) | 2385, 2475, 3080, 3524 |
| BseMII | CTCAG | 7 cut(s) | 494, 785, 1439, 2474, 2741, 2751, 2883 |
| BseRI | GAGGAG | 5 cut(s) | 33, 36, 990, 1014, 1614 |
| BseSI | GKGCMC | 4 cut(s) | 33, 50, 958, 3763 |
| BseX3I | CGGCCG | 2 cut(s) | 34, 105 |
| BseYI | CCCAGC | 1 cut(s) | 450 |
| BsgI | GTGCAG | 6 cut(s) | 161, 1974, 2471, 2538, 2835, 2922 |
| Bsh1236I | CGCG | 1 cut(s) | 2541 |
| Bsh1285I | CGRYCG | 2 cut(s) | 37, 108 |
| BshNI | GGYRCC | 2 cut(s) | 580, 760 |
| BshVI | ATCGAT | 1 cut(s) | 2929 |
| BsiEI | CGRYCG | 2 cut(s) | 37, 108 |
| BsiHKAI | GWGCWC | 2 cut(s) | 846, 3763 |
| BsiSI | CCGG | 5 cut(s) | 37, 50, 63, 735, 1734 |
| BslFI | GGGAC | 1 cut(s) | 1446 |
| BslI | CCNNNNNNNGG | 7 cut(s) | 43, 125, 400, 518, 1270, 1379, 1601 |
| BsmAI | GTCTC | 5 cut(s) | 676, 774, 2870, 2949, 3045 |
| BsmFI | GGGAC | 1 cut(s) | 1446 |
| BsmI | GAATGC | 3 cut(s) | 1705, 1834, 2950 |
| Bso31I | GGTCTC | 1 cut(s) | 2870 |
| Bsp119I | TTCGAA | 1 cut(s) | 2606 |
| Bsp120I | GGGCCC | 1 cut(s) | 46 |
| Bsp1286I | GDGCHC | 5 cut(s) | 33, 50, 846, 958, 3763 |
| Bsp1407I | TGTACA | 1 cut(s) | 3915 |
| Bsp19I | CCATGG | 1 cut(s) | 1444 |
| Bsp68I | TCGCGA | 1 cut(s) | 2541 |
| BspCNI | CTCAG | 7 cut(s) | 493, 784, 1438, 2473, 2742, 2752, 2882 |
| BspDI | ATCGAT | 1 cut(s) | 2929 |
| BspFNI | CGCG | 1 cut(s) | 2541 |
| BspHI | TCATGA | 3 cut(s) | 1612, 2581, 3604 |
| BspMAI | CTGCAG | 1 cut(s) | 2845 |
| BspMI | ACCTGC | 1 cut(s) | 637 |
| BspQI | GCTCTTC | 1 cut(s) | 1821 |
| BspT104I | TTCGAA | 1 cut(s) | 2606 |
| BspT107I | GGYRCC | 2 cut(s) | 580, 760 |
| BspTI | CTTAAG | 2 cut(s) | 2338, 3046 |
| BspTNI | GGTCTC | 1 cut(s) | 2870 |
| BsrDI | GCAATG | 4 cut(s) | 2385, 2475, 3080, 3524 |
| BsrGI | TGTACA | 1 cut(s) | 3915 |
| BssNI | GRCGYC | 3 cut(s) | 71, 116, 2157 |
| BssSI | CACGAG | 2 cut(s) | 1026, 3356 |
| BssT1I | CCWWGG | 4 cut(s) | 655, 1193, 1444, 4002 |
| Bst2BI | CACGAG | 2 cut(s) | 1026, 3356 |
| Bst2UI | CCWGG | 6 cut(s) | 362, 867, 1265, 1596, 2709, 4043 |
| Bst6I | CTCTTC | 7 cut(s) | 1734, 1821, 2198, 2603, 2817, 3236, 3864 |
| BstACI | GRCGYC | 3 cut(s) | 71, 116, 2157 |
| BstAFI | CTTAAG | 2 cut(s) | 2338, 3046 |
| BstAPI | GCANNNNNTGC | 7 cut(s) | 1588, 2552, 2834, 2837, 2849, 3079, 3164 |
| BstAUI | TGTACA | 1 cut(s) | 3915 |
| BstBAI | YACGTR | 3 cut(s) | 1288, 2558, 3473 |
| BstBI | TTCGAA | 1 cut(s) | 2606 |
| BstDSI | CCRYGG | 1 cut(s) | 1444 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1599 |
| BstFNI | CGCG | 1 cut(s) | 2541 |
| BstH2I | RGCGCY | 2 cut(s) | 1781, 3505 |
| BstHHI | GCGC | 2 cut(s) | 1780, 3504 |
| BstMAI | GTCTC | 5 cut(s) | 676, 774, 2870, 2949, 3045 |
| BstMCI | CGRYCG | 2 cut(s) | 37, 108 |
| BstNI | CCWGG | 6 cut(s) | 362, 867, 1265, 1596, 2709, 4043 |
| BstNSI | RCATGY | 4 cut(s) | 538, 745, 1472, 2996 |
| BstSCI | CCNGG | 9 cut(s) | 36, 48, 360, 733, 865, 1263, 1594, 2707, 4041 |
| BstSFI | CTRYAG | 2 cut(s) | 1365, 2841 |
| BstSLI | GKGCMC | 4 cut(s) | 33, 50, 958, 3763 |
| BstUI | CGCG | 1 cut(s) | 2541 |
| BstV2I | GAAGAC | 3 cut(s) | 84, 597, 1806 |
| BstX2I | RGATCY | 7 cut(s) | 1349, 2164, 3774, 3859, 4019, 4038, 4054 |
| BstYI | RGATCY | 7 cut(s) | 1349, 2164, 3774, 3859, 4019, 4038, 4054 |
| BstZI | CGGCCG | 2 cut(s) | 34, 105 |
| Bsu15I | ATCGAT | 1 cut(s) | 2929 |
| BsuI | GTATCC | 1 cut(s) | 2714 |
| BsuTUI | ATCGAT | 1 cut(s) | 2929 |
| BtgI | CCRYGG | 1 cut(s) | 1444 |
| BtgZI | GCGATG | 1 cut(s) | 2556 |
| BtsI | GCAGTG | 1 cut(s) | 2009 |
| BtsIMutI | CAGTG | 7 cut(s) | 899, 981, 1248, 2001, 2009, 2527, 2645 |
| BtuMI | TCGCGA | 1 cut(s) | 2541 |
| BveI | ACCTGC | 1 cut(s) | 637 |
| CaiI | CAGNNNCTG | 3 cut(s) | 674, 1465, 2849 |
| CciI | TCATGA | 3 cut(s) | 1612, 2581, 3604 |
| CfoI | GCGC | 2 cut(s) | 1780, 3504 |
| Cfr13I | GGNCC | 9 cut(s) | 46, 47, 509, 652, 1145, 2048, 2271, 2532, 3197 |
| ClaI | ATCGAT | 1 cut(s) | 2929 |
| CseI | GACGC | 2 cut(s) | 124, 1640 |
| Csp6I | GTAC | 4 cut(s) | 2006, 2671, 3146, 3916 |
| CviQI | GTAC | 4 cut(s) | 2006, 2671, 3146, 3916 |
| DraI | TTTAAA | 2 cut(s) | 3540, 3561 |
| DraIII | CACNNNGTG | 1 cut(s) | 1412 |
| EaeI | YGGCCR | 4 cut(s) | 34, 55, 105, 781 |
| EagI | CGGCCG | 2 cut(s) | 34, 105 |
| Eam1104I | CTCTTC | 7 cut(s) | 1734, 1821, 2198, 2603, 2817, 3236, 3864 |
| EarI | CTCTTC | 7 cut(s) | 1734, 1821, 2198, 2603, 2817, 3236, 3864 |
| EciI | GGCGGA | 1 cut(s) | 30 |
| EclXI | CGGCCG | 2 cut(s) | 34, 105 |
| Eco130I | CCWWGG | 4 cut(s) | 655, 1193, 1444, 4002 |
| Eco147I | AGGCCT | 2 cut(s) | 2392, 2456 |
| Eco24I | GRGCYC | 1 cut(s) | 50 |
| Eco31I | GGTCTC | 1 cut(s) | 2870 |
| Eco47I | GGWCC | 1 cut(s) | 2048 |
| Eco47III | AGCGCT | 1 cut(s) | 1779 |
| Eco52I | CGGCCG | 2 cut(s) | 34, 105 |
| Eco57I | CTGAAG | 5 cut(s) | 255, 413, 684, 2669, 3885 |
| Eco72I | CACGTG | 1 cut(s) | 3473 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1599 |
| EcoRII | CCWGG | 6 cut(s) | 360, 865, 1263, 1594, 2707, 4041 |
| EcoT14I | CCWWGG | 4 cut(s) | 655, 1193, 1444, 4002 |
| EcoT38I | GRGCYC | 1 cut(s) | 50 |
| ErhI | CCWWGG | 4 cut(s) | 655, 1193, 1444, 4002 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 411, 443, 1764, 1796 |
| FaqI | GGGAC | 1 cut(s) | 1446 |
| FauI | CCCGC | 1 cut(s) | 20 |
| FauNDI | CATATG | 2 cut(s) | 1656, 2152 |
| FbaI | TGATCA | 2 cut(s) | 2353, 2620 |
| FblI | GTMKAC | 1 cut(s) | 113 |
| FriOI | GRGCYC | 1 cut(s) | 50 |
| GlaI | GCGC | 2 cut(s) | 1779, 3503 |
| GsaI | CCCAGC | 1 cut(s) | 454 |
| GsuI | CTGGAG | 3 cut(s) | 286, 987, 1617 |
| HaeII | RGCGCY | 2 cut(s) | 1781, 3505 |
| HapII | CCGG | 5 cut(s) | 37, 50, 63, 735, 1734 |
| HgaI | GACGC | 2 cut(s) | 124, 1640 |
| HhaI | GCGC | 2 cut(s) | 1780, 3504 |
| Hin1I | GRCGYC | 3 cut(s) | 71, 116, 2157 |
| Hin6I | GCGC | 2 cut(s) | 1778, 3502 |
| HinP1I | GCGC | 2 cut(s) | 1778, 3502 |
| HincII | GTYRAC | 3 cut(s) | 114, 391, 2971 |
| HindII | GTYRAC | 3 cut(s) | 114, 391, 2971 |
| HindIII | AAGCTT | 4 cut(s) | 1725, 1890, 2309, 2513 |
| HpaI | GTTAAC | 1 cut(s) | 2971 |
| HpaII | CCGG | 5 cut(s) | 37, 50, 63, 735, 1734 |
| HphI | GGTGA | 5 cut(s) | 957, 1526, 1801, 2116, 3689 |
| Hpy166II | GTNNAC | 9 cut(s) | 114, 391, 1415, 1452, 2113, 2858, 2971, 3761, 3916 |
| Hpy8I | GTNNAC | 9 cut(s) | 114, 391, 1415, 1452, 2113, 2858, 2971, 3761, 3916 |
| Hpy99I | CGWCG | 2 cut(s) | 73, 118 |
| HpyAV | CCTTC | 7 cut(s) | 230, 708, 1511, 1786, 2174, 3292, 3749 |
| HpyCH4IV | ACGT | 8 cut(s) | 71, 1287, 1876, 2157, 2422, 2557, 2854, 3472 |
| HpySE526I | ACGT | 8 cut(s) | 71, 1287, 1876, 2157, 2422, 2557, 2854, 3472 |
| Hsp92I | GRCGYC | 3 cut(s) | 71, 116, 2157 |
| HspAI | GCGC | 2 cut(s) | 1778, 3502 |
| Ksp22I | TGATCA | 2 cut(s) | 2353, 2620 |
| KspAI | GTTAAC | 1 cut(s) | 2971 |
| LguI | GCTCTTC | 1 cut(s) | 1821 |
| LmnI | GCTCC | 5 cut(s) | 305, 362, 1558, 1775, 2434 |
| MaeII | ACGT | 8 cut(s) | 71, 1287, 1876, 2157, 2422, 2557, 2854, 3472 |
| MfeI | CAATTG | 4 cut(s) | 185, 1011, 1586, 1749 |
| MflI | RGATCY | 7 cut(s) | 1349, 2164, 3774, 3859, 4019, 4038, 4054 |
| MhlI | GDGCHC | 5 cut(s) | 33, 50, 846, 958, 3763 |
| MlsI | TGGCCA | 1 cut(s) | 783 |
| MluNI | TGGCCA | 1 cut(s) | 783 |
| MlyI | GAGTC | 6 cut(s) | 382, 683, 1497, 1670, 2081, 2761 |
| Mox20I | TGGCCA | 1 cut(s) | 783 |
| MroXI | GAANNNNTTC | 3 cut(s) | 1225, 2769, 3462 |
| MscI | TGGCCA | 1 cut(s) | 783 |
| Msp20I | TGGCCA | 1 cut(s) | 783 |
| MspA1I | CMGCKG | 5 cut(s) | 1465, 2428, 2846, 2894, 3970 |
| MspCI | CTTAAG | 2 cut(s) | 2338, 3046 |
| MspI | CCGG | 5 cut(s) | 37, 50, 63, 735, 1734 |
| MspR9I | CCNGG | 9 cut(s) | 38, 50, 362, 735, 867, 1265, 1596, 2709, 4043 |
| MunI | CAATTG | 4 cut(s) | 185, 1011, 1586, 1749 |
| Mva1269I | GAATGC | 3 cut(s) | 1705, 1834, 2950 |
| MvaI | CCWGG | 6 cut(s) | 362, 867, 1265, 1596, 2709, 4043 |
| MvnI | CGCG | 1 cut(s) | 2541 |
| NciI | CCSGG | 3 cut(s) | 38, 50, 735 |
| NcoI | CCATGG | 1 cut(s) | 1444 |
| NdeI | CATATG | 2 cut(s) | 1656, 2152 |
| NmeAIII | GCCGAG | 1 cut(s) | 83 |
| NmuCI | GTSAC | 6 cut(s) | 686, 885, 1404, 1945, 3358, 3552 |
| NruI | TCGCGA | 1 cut(s) | 2541 |
| NspI | RCATGY | 4 cut(s) | 538, 745, 1472, 2996 |
| NspV | TTCGAA | 1 cut(s) | 2606 |
| PagI | TCATGA | 3 cut(s) | 1612, 2581, 3604 |
| PaqCI | CACCTGC | 1 cut(s) | 637 |
| PasI | CCCWGGG | 1 cut(s) | 2708 |
| PceI | AGGCCT | 2 cut(s) | 2392, 2456 |
| PciI | ACATGT | 1 cut(s) | 741 |
| PciSI | GCTCTTC | 1 cut(s) | 1821 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 110, 2554 |
| PctI | GAATGC | 3 cut(s) | 1705, 1834, 2950 |
| PdmI | GAANNNNTTC | 3 cut(s) | 1225, 2769, 3462 |
| PfeI | GAWTC | 5 cut(s) | 134, 1676, 2806, 3458, 3883 |
| PflFI | GACNNNGTC | 1 cut(s) | 372 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1270 |
| PfoI | TCCNGGA | 2 cut(s) | 1594, 4041 |
| PleI | GAGTC | 6 cut(s) | 381, 683, 1497, 1669, 2081, 2760 |
| PmaCI | CACGTG | 1 cut(s) | 3473 |
| PmlI | CACGTG | 1 cut(s) | 3473 |
| PpsI | GAGTC | 6 cut(s) | 381, 683, 1497, 1669, 2081, 2760 |
| Ppu21I | YACGTR | 3 cut(s) | 1288, 2558, 3473 |
| PscI | ACATGT | 1 cut(s) | 741 |
| Psp6I | CCWGG | 6 cut(s) | 360, 865, 1263, 1594, 2707, 4041 |
| PspCI | CACGTG | 1 cut(s) | 3473 |
| PspFI | CCCAGC | 1 cut(s) | 450 |
| PspGI | CCWGG | 6 cut(s) | 360, 865, 1263, 1594, 2707, 4041 |
| PspOMI | GGGCCC | 1 cut(s) | 46 |
| PspPI | GGNCC | 9 cut(s) | 46, 47, 509, 652, 1145, 2048, 2271, 2532, 3197 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 396, 428 |
| PstI | CTGCAG | 1 cut(s) | 2845 |
| PstNI | CAGNNNCTG | 3 cut(s) | 674, 1465, 2849 |
| PsuI | RGATCY | 7 cut(s) | 1349, 2164, 3774, 3859, 4019, 4038, 4054 |
| PsyI | GACNNNGTC | 1 cut(s) | 372 |
| PvuII | CAGCTG | 2 cut(s) | 1465, 2846 |
| RruI | TCGCGA | 1 cut(s) | 2541 |
| RsaI | GTAC | 4 cut(s) | 2007, 2672, 3147, 3917 |
| RsaNI | GTAC | 4 cut(s) | 2006, 2671, 3146, 3916 |
| SalI | GTCGAC | 1 cut(s) | 112 |
| SapI | GCTCTTC | 1 cut(s) | 1821 |
| Sau96I | GGNCC | 9 cut(s) | 46, 47, 509, 652, 1145, 2048, 2271, 2532, 3197 |
| SchI | GAGTC | 6 cut(s) | 382, 683, 1497, 1670, 2081, 2761 |
| ScrFI | CCNGG | 9 cut(s) | 38, 50, 362, 735, 867, 1265, 1596, 2709, 4043 |
| SduI | GDGCHC | 5 cut(s) | 33, 50, 846, 958, 3763 |
| SfcI | CTRYAG | 2 cut(s) | 1365, 2841 |
| SfiI | GGCCNNNNNGGCC | 1 cut(s) | 54 |
| SfuI | TTCGAA | 1 cut(s) | 2606 |
| SinI | GGWCC | 1 cut(s) | 2048 |
| SmlI | CTYRAG | 7 cut(s) | 839, 1505, 1530, 1565, 2338, 3046, 3324 |
| SmoI | CTYRAG | 7 cut(s) | 839, 1505, 1530, 1565, 2338, 3046, 3324 |
| SpeI | ACTAGT | 1 cut(s) | 2699 |
| SseBI | AGGCCT | 2 cut(s) | 2392, 2456 |
| SspI | AATATT | 2 cut(s) | 1609, 3114 |
| StuI | AGGCCT | 2 cut(s) | 2392, 2456 |
| StyD4I | CCNGG | 9 cut(s) | 36, 48, 360, 733, 865, 1263, 1594, 2707, 4041 |
| StyI | CCWWGG | 4 cut(s) | 655, 1193, 1444, 4002 |
| TaiI | ACGT | 8 cut(s) | 74, 1290, 1879, 2160, 2425, 2560, 2857, 3475 |
| TaqII | GACCGA | 1 cut(s) | 3378 |
| TatI | WGTACW | 2 cut(s) | 3145, 3915 |
| TauI | GCSGC | 6 cut(s) | 121, 300, 514, 2897, 3202, 3739 |
| TfiI | GAWTC | 5 cut(s) | 134, 1676, 2806, 3458, 3883 |
| TscAI | CASTG | 7 cut(s) | 906, 981, 1248, 2008, 2016, 2534, 2652 |
| TseFI | GTSAC | 6 cut(s) | 686, 885, 1404, 1945, 3358, 3552 |
| Tsp45I | GTSAC | 6 cut(s) | 686, 885, 1404, 1945, 3358, 3552 |
| TspGWI | ACGGA | 5 cut(s) | 635, 2278, 2563, 3049, 3259 |
| TspRI | CASTG | 7 cut(s) | 906, 981, 1248, 2008, 2016, 2534, 2652 |
| Tth111I | GACNNNGTC | 1 cut(s) | 372 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1270 |
| Vha464I | CTTAAG | 2 cut(s) | 2338, 3046 |
| VneI | GTGCAC | 1 cut(s) | 3759 |
| VpaK11BI | GGWCC | 1 cut(s) | 2048 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1599 |
| XapI | RAATTY | 5 cut(s) | 613, 1294, 2248, 2600, 3711 |
| XbaI | TCTAGA | 2 cut(s) | 194, 2518 |
| XceI | RCATGY | 4 cut(s) | 538, 745, 1472, 2996 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1409 |
| XmaJI | CCTAGG | 1 cut(s) | 1193 |
| XmiI | GTMKAC | 1 cut(s) | 113 |
| XmnI | GAANNNNTTC | 3 cut(s) | 1225, 2769, 3462 |
| ZraI | GACGTC | 2 cut(s) | 72, 2158 |