Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Forward (+)

22898836 .. 22901871

Gene Structure 3036 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1114700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAGTTGGTTCCTGTGTTCTGGCAAATTAAGCAGAAAAGCTGCAAAGAAGAAGAAGCTCAAGAATAAGAAGACAGAAGATCAGATCTCATCAATTTCAGGAATAATGTGGGTTTGTTGTTATGTGCAACTGAAGGCAAATTTGGGACCATCTGTAAAGGAGGCTCCAAAGGATGGAGGCTCCGGTCACATTGCAGCACATACATTTACATTTCGAGAATTGGCAGCTGCAACAAAGAACTTTCGAGCAGATTGTATTTTAGGTGAAGGAGGTTTTGGTCAAGTATATAAAGGGCGCTTGGAGAGCACTAATCAGGTAGTGGCTATAAAGCAACTTGATTCCAATGGGCTTCAAGGGAACAGGGAATTCCTTGTCGAAGTATTAATGTTGAGCCTACTTCACCATCCCAATCTTGTGAACTTGGTAGGCTATTGTGCTGACGGGGATCAGAGGCTTTTGGTATACGAGTACATGCCATTGGGTTCTTTGGAAGACCATCTGCACGATCTACCGCCAGATGGAAAACATCTTGACTGGAACACGAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTGGAGTATTTGCACGACAAAGCTAGCCCCCCTGTTATTTATCGTGATCTTAAATGCTCAAACATTTTACTTGGTGAAGGATACCATCCTAAGCTATCGGATTTTGGCTTGGCAAAGTTGGGTCCTGTGGGAGATAATACTCATGTTTCCACTAGGGTGATGGGAACCTATGGATATTGCGCCCCTGAATATGCAATGACTGGTCAGCTCACATTGAAATCAGATGTATACAGCTTCGGGGTTGTTCTTCTGGAAATCATTACCGGAAGAAAGGCAATTGACATTTCCAGGGCTGCCGGTGAACAGAATTTGGTCACATGGGCCCGCCCCTTGTTTAGAGATCGGAGGAAATTTTGGCAAATTGCTGATCCAATGCTCCAAGGTCAGTATCCGGTGAGAGGAATGTATCAAGCTCTTGCCGTGGCTGCAATGTGTGTCCAGGATCACCCTAATATGCGACCTGTCATAGCGGATGCAGTGACAGCCCTTAGTTACCTTGCTTCCCAAAAATATGATCCTGAAGCACGGCAATCACACACCTCTCACACAGCATCGTCCACTCCTAGGTCTAGGAGGGAACTTCTAAATTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

390

Amino Acids

43.01

Weight (kDa)

9.09

Isoelectric Point (pI)

29.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	85 - 284	3.1e-46	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	86 - 292	3.9e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	173
AccI	GTMKAC	2 cut(s)	462, 804
AciI	CCGC	3 cut(s)	512, 901, 1046
AclWI	GGATC	4 cut(s)	453, 938, 1026, 1085
AcsI	RAATTY	5 cut(s)	139, 365, 883, 926, 1162
AcuI	CTGAAG	2 cut(s)	152, 1116
AfaI	GTAC	1 cut(s)	470
AfiI	CCNNNNNNNGG	4 cut(s)	173, 518, 974, 1140
AgsI	TTSAA	2 cut(s)	353, 793
AjnI	CCWGG	2 cut(s)	863, 1014
AjuI	GAANNNNNNNTTGG	4 cut(s)	125, 157, 258, 290
AleI	CACNNNNGTG	1 cut(s)	731
AluBI	AGCT	9 cut(s)	41, 58, 227, 557, 599, 670, 784, 810, 989
AluI	AGCT	9 cut(s)	41, 58, 227, 557, 599, 670, 784, 810, 989
Alw21I	GWGCWC	1 cut(s)	308
AlwI	GGATC	4 cut(s)	453, 938, 1026, 1085
AoxI	GGCC	1 cut(s)	897
ApaI	GGGCCC	1 cut(s)	901
ApeKI	GCWGC	8 cut(s)	41, 194, 224, 227, 557, 566, 869, 1001
ApoI	RAATTY	5 cut(s)	139, 365, 883, 926, 1162
AseI	ATTAAT	1 cut(s)	383
AspA2I	CCTAGG	1 cut(s)	1139
AspLEI	GCGC	2 cut(s)	297, 758
AspS9I	GGNCC	4 cut(s)	146, 698, 897, 898
AsuHPI	GGTGA	7 cut(s)	275, 392, 662, 745, 887, 982, 1013
AsuNHI	GCTAGC	1 cut(s)	599
AvaII	GGWCC	2 cut(s)	146, 698
AvrII	CCTAGG	1 cut(s)	1139
BaeGI	GKGCMC	1 cut(s)	901
BanII	GRGCYC	1 cut(s)	901
BauI	CACGAG	1 cut(s)	541
BbsI	GAAGAC	2 cut(s)	77, 498
Bbv12I	GWGCWC	1 cut(s)	308
BbvI	GCAGC	8 cut(s)	28, 206, 214, 236, 544, 553, 856, 988
BccI	CCATC	7 cut(s)	157, 167, 411, 504, 512, 669, 730
BceAI	ACGGC	2 cut(s)	980, 1118
BciT130I	CCWGG	2 cut(s)	865, 1016
BciVI	GTATCC	2 cut(s)	650, 975
BfaI	CTAG	4 cut(s)	600, 729, 1140, 1146
BfoI	RGCGCY	1 cut(s)	298
BfuI	GTATCC	2 cut(s)	650, 975
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	8 cut(s)	42, 195, 225, 228, 558, 567, 870, 1002
BlnI	CCTAGG	1 cut(s)	1139
BlsI	GCNGC	8 cut(s)	43, 196, 226, 229, 559, 568, 871, 1003
Bme1390I	CCNGG	2 cut(s)	865, 1016
Bme18I	GGWCC	2 cut(s)	146, 698
BmgT120I	GGNCC	4 cut(s)	146, 698, 897, 898
BmiI	GGNNCC	7 cut(s)	11, 147, 165, 181, 699, 742, 899
BmrFI	CCNGG	2 cut(s)	865, 1016
BmsI	GCATC	2 cut(s)	1039, 1136
BmtI	GCTAGC	1 cut(s)	603
BpiI	GAAGAC	2 cut(s)	77, 498
Bpu10I	CCTNAGC	1 cut(s)	666
BpuEI	CTTGAG	1 cut(s)	44
BsaJI	CCNNGG	4 cut(s)	864, 955, 996, 1139
BsaWI	WCCGGW	3 cut(s)	182, 839, 967
Bsc4I	CCNNNNNNNGG	4 cut(s)	173, 518, 974, 1140
Bse118I	RCCGGY	1 cut(s)	872
Bse1I	ACTGG	2 cut(s)	539, 781
Bse3DI	GCAATG	3 cut(s)	189, 777, 1011
BseBI	CCWGG	2 cut(s)	865, 1016
BseDI	CCNNGG	4 cut(s)	864, 955, 996, 1139
BseGI	GGATG	4 cut(s)	178, 403, 661, 1054
BseLI	CCNNNNNNNGG	4 cut(s)	173, 518, 974, 1140
BseMI	GCAATG	3 cut(s)	189, 777, 1011
BseNI	ACTGG	2 cut(s)	539, 781
BseSI	GKGCMC	1 cut(s)	901
BseXI	GCAGC	8 cut(s)	28, 206, 214, 236, 544, 553, 856, 988
BsgI	GTGCAG	1 cut(s)	485
BshFI	GGCC	1 cut(s)	899
BsiHKAI	GWGCWC	1 cut(s)	308
BsiSI	CCGG	4 cut(s)	183, 840, 873, 968
BslFI	GGGAC	1 cut(s)	159
BslI	CCNNNNNNNGG	4 cut(s)	173, 518, 974, 1140
BsmFI	GGGAC	1 cut(s)	159
BsnI	GGCC	1 cut(s)	899
Bsp120I	GGGCCC	1 cut(s)	897
Bsp1286I	GDGCHC	2 cut(s)	308, 901
Bsp143I	GATC	9 cut(s)	79, 84, 445, 505, 622, 916, 943, 1018, 1090
BspACI	CCGC	3 cut(s)	512, 901, 1046
BspANI	GGCC	1 cut(s)	899
BspLI	GGNNCC	7 cut(s)	11, 147, 165, 181, 699, 742, 899
BspOI	GCTAGC	1 cut(s)	603
BspPI	GGATC	4 cut(s)	453, 938, 1026, 1085
BsrDI	GCAATG	3 cut(s)	189, 777, 1011
BsrFI	RCCGGY	1 cut(s)	872
BsrI	ACTGG	2 cut(s)	539, 781
BssAI	RCCGGY	1 cut(s)	872
BssECI	CCNNGG	4 cut(s)	864, 955, 996, 1139
BssMI	GATC	9 cut(s)	79, 84, 445, 505, 622, 916, 943, 1018, 1090
BssNAI	GTATAC	2 cut(s)	463, 805
BssSI	CACGAG	1 cut(s)	541
BssT1I	CCWWGG	2 cut(s)	955, 1139
Bst1107I	GTATAC	2 cut(s)	463, 805
Bst2BI	CACGAG	1 cut(s)	541
Bst2UI	CCWGG	2 cut(s)	865, 1016
BstC8I	GCNNGC	2 cut(s)	601, 901
BstDEI	CTNAG	2 cut(s)	666, 1064
BstDSI	CCRYGG	1 cut(s)	996
BstF5I	GGATG	4 cut(s)	178, 403, 661, 1054
BstH2I	RGCGCY	1 cut(s)	298
BstHHI	GCGC	2 cut(s)	297, 758
BstKTI	GATC	9 cut(s)	82, 87, 448, 508, 625, 919, 946, 1021, 1093
BstMBI	GATC	9 cut(s)	79, 84, 445, 505, 622, 916, 943, 1018, 1090
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 303, 563, 566, 1001, 1058
BstNI	CCWGG	2 cut(s)	865, 1016
BstNSI	RCATGY	1 cut(s)	475
BstSCI	CCNGG	2 cut(s)	863, 1014
BstSLI	GKGCMC	1 cut(s)	901
BstV1I	GCAGC	8 cut(s)	28, 206, 214, 236, 544, 553, 856, 988
BstV2I	GAAGAC	2 cut(s)	77, 498
BstX2I	RGATCY	1 cut(s)	84
BstYI	RGATCY	1 cut(s)	84
BstZ17I	GTATAC	2 cut(s)	463, 805
BsuI	GTATCC	2 cut(s)	650, 975
BsuRI	GGCC	1 cut(s)	899
BtgI	CCRYGG	1 cut(s)	996
BtsCI	GGATG	4 cut(s)	178, 403, 661, 1054
BtsI	GCAGTG	1 cut(s)	1059
BtsIMutI	CAGTG	1 cut(s)	1059
Cac8I	GCNNGC	2 cut(s)	601, 901
CfoI	GCGC	2 cut(s)	297, 758
Cfr10I	RCCGGY	1 cut(s)	872
Cfr13I	GGNCC	4 cut(s)	146, 698, 897, 898
Csp6I	GTAC	1 cut(s)	469
CviAII	CATG	3 cut(s)	472, 719, 894
CviQI	GTAC	1 cut(s)	469
DdeI	CTNAG	2 cut(s)	666, 1064
DpnI	GATC	9 cut(s)	81, 86, 447, 507, 624, 918, 945, 1020, 1092
DpnII	GATC	9 cut(s)	79, 84, 445, 505, 622, 916, 943, 1018, 1090
Eco130I	CCWWGG	2 cut(s)	955, 1139
Eco24I	GRGCYC	1 cut(s)	901
Eco47I	GGWCC	2 cut(s)	146, 698
Eco57I	CTGAAG	2 cut(s)	152, 1116
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRI	GAATTC	1 cut(s)	365
EcoRII	CCWGG	2 cut(s)	863, 1014
EcoT14I	CCWWGG	2 cut(s)	955, 1139
EcoT38I	GRGCYC	1 cut(s)	901
ErhI	CCWWGG	2 cut(s)	955, 1139
FaeI	CATG	3 cut(s)	475, 722, 897
FaqI	GGGAC	1 cut(s)	159
FatI	CATG	3 cut(s)	471, 718, 893
FauI	CCCGC	1 cut(s)	908
FblI	GTMKAC	2 cut(s)	462, 804
Fnu4HI	GCNGC	8 cut(s)	42, 195, 225, 228, 558, 567, 870, 1002
FokI	GGATG	4 cut(s)	185, 390, 648, 1061
FriOI	GRGCYC	1 cut(s)	901
Fsp4HI	GCNGC	8 cut(s)	42, 195, 225, 228, 558, 567, 870, 1002
FspBI	CTAG	4 cut(s)	600, 729, 1140, 1146
GlaI	GCGC	2 cut(s)	296, 757
GluI	GCNGC	8 cut(s)	42, 195, 225, 228, 558, 567, 870, 1002
HaeII	RGCGCY	1 cut(s)	298
HaeIII	GGCC	1 cut(s)	899
HapII	CCGG	4 cut(s)	183, 840, 873, 968
HhaI	GCGC	2 cut(s)	297, 758
Hin1II	CATG	3 cut(s)	475, 722, 897
Hin6I	GCGC	2 cut(s)	295, 756
HinP1I	GCGC	2 cut(s)	295, 756
HinfI	GANTC	1 cut(s)	338
HpaII	CCGG	4 cut(s)	183, 840, 873, 968
HphI	GGTGA	7 cut(s)	275, 392, 662, 745, 887, 982, 1013
Hpy166II	GTNNAC	5 cut(s)	418, 463, 805, 878, 1134
Hpy188I	TCNGA	5 cut(s)	84, 450, 676, 799, 921
Hpy188III	TCNNGA	7 cut(s)	61, 99, 215, 530, 620, 827, 1094
Hpy8I	GTNNAC	5 cut(s)	418, 463, 805, 878, 1134
HpyAV	CCTTC	3 cut(s)	127, 260, 647
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 303, 563, 566, 1001, 1058
HpyF3I	CTNAG	2 cut(s)	666, 1064
Hsp92II	CATG	3 cut(s)	475, 722, 897
HspAI	GCGC	2 cut(s)	295, 756
Kzo9I	GATC	9 cut(s)	79, 84, 445, 505, 622, 916, 943, 1018, 1090
LmnI	GCTCC	3 cut(s)	169, 185, 957
Lsp1109I	GCAGC	8 cut(s)	28, 206, 214, 236, 544, 553, 856, 988
LweI	GCATC	2 cut(s)	1039, 1136
MaeI	CTAG	4 cut(s)	600, 729, 1140, 1146
MaeIII	GTNAC	4 cut(s)	185, 889, 1054, 1067
MalI	GATC	9 cut(s)	81, 86, 447, 507, 624, 918, 945, 1020, 1092
MboI	GATC	9 cut(s)	79, 84, 445, 505, 622, 916, 943, 1018, 1090
MboII	GAAGA	7 cut(s)	61, 64, 82, 89, 503, 815, 855
MfeI	CAATTG	1 cut(s)	852
MflI	RGATCY	1 cut(s)	84
MhlI	GDGCHC	2 cut(s)	308, 901
MnlI	CCTC	8 cut(s)	154, 170, 263, 444, 915, 968, 1126, 1143
MseI	TTAA	3 cut(s)	29, 383, 627
MslI	CAYNNNNRTG	2 cut(s)	545, 731
MspA1I	CMGCKG	1 cut(s)	227
MspI	CCGG	4 cut(s)	183, 840, 873, 968
MspR9I	CCNGG	2 cut(s)	865, 1016
MunI	CAATTG	1 cut(s)	852
MvaI	CCWGG	2 cut(s)	865, 1016
MwoI	GCNNNNNNNGC	6 cut(s)	30, 303, 563, 566, 1001, 1058
NdeII	GATC	9 cut(s)	79, 84, 445, 505, 622, 916, 943, 1018, 1090
NheI	GCTAGC	1 cut(s)	599
NlaIII	CATG	3 cut(s)	475, 722, 897
NlaIV	GGNNCC	7 cut(s)	11, 147, 165, 181, 699, 742, 899
NmuCI	GTSAC	3 cut(s)	185, 889, 1054
NspI	RCATGY	1 cut(s)	475
OliI	CACNNNNGTG	1 cut(s)	731
PfeI	GAWTC	1 cut(s)	338
PflMI	CCANNNNNTGG	1 cut(s)	173
PfoI	TCCNGGA	1 cut(s)	1014
PkrI	GCNGC	8 cut(s)	43, 196, 226, 229, 559, 568, 871, 1003
PpuMI	RGGWCCY	1 cut(s)	698
PshBI	ATTAAT	1 cut(s)	383
Psp5II	RGGWCCY	1 cut(s)	698
Psp6I	CCWGG	2 cut(s)	863, 1014
PspGI	CCWGG	2 cut(s)	863, 1014
PspN4I	GGNNCC	7 cut(s)	11, 147, 165, 181, 699, 742, 899
PspOMI	GGGCCC	1 cut(s)	897
PspPI	GGNCC	4 cut(s)	146, 698, 897, 898
PspPPI	RGGWCCY	1 cut(s)	698
PsuI	RGATCY	1 cut(s)	84
PvuII	CAGCTG	1 cut(s)	227
RsaI	GTAC	1 cut(s)	470
RsaNI	GTAC	1 cut(s)	469
RseI	CAYNNNNRTG	2 cut(s)	545, 731
SaqAI	TTAA	3 cut(s)	29, 383, 627
SatI	GCNGC	8 cut(s)	42, 195, 225, 228, 558, 567, 870, 1002
Sau3AI	GATC	9 cut(s)	79, 84, 445, 505, 622, 916, 943, 1018, 1090
Sau96I	GGNCC	4 cut(s)	146, 698, 897, 898
ScrFI	CCNGG	2 cut(s)	865, 1016
SduI	GDGCHC	2 cut(s)	308, 901
SfaNI	GCATC	2 cut(s)	1039, 1136
SinI	GGWCC	2 cut(s)	146, 698
SmiMI	CAYNNNNRTG	2 cut(s)	545, 731
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
SsiI	CCGC	3 cut(s)	512, 901, 1046
SspMI	CTAG	4 cut(s)	600, 729, 1140, 1146
StyD4I	CCNGG	2 cut(s)	863, 1014
StyI	CCWWGG	2 cut(s)	955, 1139
TaqI	TCGA	3 cut(s)	214, 244, 375
TatI	WGTACW	1 cut(s)	468
TfiI	GAWTC	1 cut(s)	338
Tru1I	TTAA	3 cut(s)	29, 383, 627
Tru9I	TTAA	3 cut(s)	29, 383, 627
TscAI	CASTG	1 cut(s)	1059
TseFI	GTSAC	3 cut(s)	185, 889, 1054
TseI	GCWGC	8 cut(s)	41, 194, 224, 227, 557, 566, 869, 1001
Tsp45I	GTSAC	3 cut(s)	185, 889, 1054
TspDTI	ATGAA	2 cut(s)	563, 1155
TspRI	CASTG	1 cut(s)	1059
Van91I	CCANNNNNTGG	1 cut(s)	173
VpaK11BI	GGWCC	2 cut(s)	146, 698
VspI	ATTAAT	1 cut(s)	383
XapI	RAATTY	5 cut(s)	139, 365, 883, 926, 1162
XceI	RCATGY	1 cut(s)	475
XcmI	CCANNNNNNNNNTGG	1 cut(s)	733
XmaJI	CCTAGG	1 cut(s)	1139
XmiI	GTMKAC	2 cut(s)	462, 804
XspI	CTAG	4 cut(s)	600, 729, 1140, 1146

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.