Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Reverse (-)

12202994 .. 12206891

Gene Structure 3898 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00291820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAGTTGGTTCTTGTGTTCTGGAAAATTAAGCACAAATGCAAAGAAGAAGAAGAAGCAGAGTCATAAGCCAGCAGATCAGATCTCATCACTTTCAGATCAAGTGAAGACAAATTCAGCATTAAAGGAAGGGTCTAAAAGTAGCGGCTCTGATCACATTGCAGCACATACATTTACATTTCGCGAATTGGCAGCTGCAACAAAGAATTTTAGAGCAGATTGTTTTGTGGGTGAAGGAGGTTTTGGTCAAGTATATAGAGGGCACCTGGAGAGTTCTAATCAGGAAGTGGCTATCAAGAAACTTGATTCTAATGGACTTCAAGGGAACAGAGAATTCCTTGTCGAAGTATTAATGCTAAGCCTACTTCACCACCCGAATCTTGTCAACTTAATAGGCTACTGTGCTGATGGGGATCAGAGGCTTTTGGTATACGAGTACATGCCATTGGGATCCTTAGAAGACCATTTACATGATCTACCACCAGATAAAAAACAACTCGACTGGAATACCCGAATGAAAATAGCTGCTGGTGCTGCCAAGGGCTTGGAGTATTTGCACGACAAAGCTAACCCTCCTGTTATTTATCGTGATCTTAAGTGCTCAAACATTCTACTTGATGAAGGTTACCATCCCAAGCTATCTGATTTTGGCTTGGCAAAGTTAGGTCCTGTAGGAGATAATACTCATGTTTCCACTAGGGTAATGGGAACCTATGGATATTGTGCCCCTGAGTATGCAATGACTGGTCAACTCACATTGAAATCAGATGTATATAGCTTCGGGGTTGTTCTTTTGGAAATTATCACTGGAAGAAAGGCAATTGACAATTCAAGGGCTGCTGGGGAACACAATTTGGTTGCATGGGCCCGTCCCTTATTTAGAGACCGTAGGAAATTTTCACAGATTGCTGATCCATTGCTCCAAGGACAATATCCGATGAGGGGAATGTATCAAGCTCTTGCGGTTGCTGCAATGTGTGTCCAAGAACAGCCTAATATGAGACCTGTCATAGCAGATGTAGTCACAGCCCTTAATTATCTTGCTTCCCAAAAGTATGACCCTCAAGTGCTTCGAGTCCAGAACTCTCGCACAGGCTCGTCAGCCTCGTCTACTCCTAGATCAAGAAGGGAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

378

Amino Acids

41.9

Weight (kDa)

9.03

Isoelectric Point (pI)

29.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	75 - 342	8.6e-48	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	75 - 339	2.4e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	2 cut(s)	429, 1109
AccII	CGCG	1 cut(s)	183
AciI	CCGC	2 cut(s)	144, 962
AclWI	GGATC	4 cut(s)	420, 444, 457, 905
AcsI	RAATTY	5 cut(s)	112, 205, 332, 893, 1130
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	941
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	3 cut(s)	320, 760, 831
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	6 cut(s)	194, 524, 566, 637, 777, 956
AluI	AGCT	6 cut(s)	194, 524, 566, 637, 777, 956
Alw21I	GWGCWC	1 cut(s)	602
Alw26I	GTCTC	2 cut(s)	876, 994
AlwI	GGATC	4 cut(s)	420, 444, 457, 905
AoxI	GGCC	1 cut(s)	864
ApaI	GGGCCC	1 cut(s)	868
ApeKI	GCWGC	7 cut(s)	161, 191, 194, 524, 533, 836, 968
ApoI	RAATTY	5 cut(s)	112, 205, 332, 893, 1130
AseI	ATTAAT	1 cut(s)	350
AspS9I	GGNCC	3 cut(s)	665, 864, 865
AsuHPI	GGTGA	2 cut(s)	242, 359
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	3 cut(s)	264, 727, 868
BamHI	GGATCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	868
BarI	GAAGNNNNNNTAC	2 cut(s)	450, 482
BbsI	GAAGAC	2 cut(s)	113, 465
Bbv12I	GWGCWC	1 cut(s)	602
BbvI	GCAGC	7 cut(s)	173, 181, 203, 511, 520, 823, 955
BccI	CCATC	2 cut(s)	401, 636
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	2 cut(s)	876, 994
BfaI	CTAG	2 cut(s)	696, 1116
BfmI	CTRYAG	1 cut(s)	669
BfrI	CTTAAG	1 cut(s)	593
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	8 cut(s)	145, 162, 192, 195, 525, 534, 837, 969
BlpI	GCTNAGC	1 cut(s)	356
BlsI	GCNGC	8 cut(s)	146, 163, 193, 196, 526, 535, 838, 970
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	3 cut(s)	665, 864, 865
BmiI	GGNNCC	4 cut(s)	263, 451, 709, 866
BmrFI	CCNGG	1 cut(s)	266
BpiI	GAAGAC	2 cut(s)	113, 465
BpmI	CTGGAG	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	1047
BsaBI	GATNNNNATC	1 cut(s)	411
BsaI	GGTCTC	2 cut(s)	876, 994
BsaJI	CCNNGG	2 cut(s)	537, 922
Bsc4I	CCNNNNNNNGG	1 cut(s)	941
Bse1I	ACTGG	3 cut(s)	506, 748, 811
Bse3DI	GCAATG	4 cut(s)	156, 744, 914, 978
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	537, 922
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	941
BseMI	GCAATG	4 cut(s)	156, 744, 914, 978
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	3 cut(s)	506, 748, 811
BseSI	GKGCMC	3 cut(s)	264, 727, 868
BseXI	GCAGC	7 cut(s)	173, 181, 203, 511, 520, 823, 955
BseYI	CCCAGC	1 cut(s)	839
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	866
BshNI	GGYRCC	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	602
BslFI	GGGAC	1 cut(s)	855
BslI	CCNNNNNNNGG	1 cut(s)	941
BsmAI	GTCTC	2 cut(s)	876, 994
BsmFI	GGGAC	1 cut(s)	855
BsnI	GGCC	1 cut(s)	866
Bso31I	GGTCTC	2 cut(s)	876, 994
Bsp120I	GGGCCC	1 cut(s)	864
Bsp1286I	GDGCHC	4 cut(s)	264, 602, 727, 868
Bsp1720I	GCTNAGC	1 cut(s)	356
Bsp68I	TCGCGA	1 cut(s)	183
BspACI	CCGC	2 cut(s)	144, 962
BspANI	GGCC	1 cut(s)	866
BspCNI	CTCAG	1 cut(s)	721
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	4 cut(s)	263, 451, 709, 866
BspPI	GGATC	4 cut(s)	420, 444, 457, 905
BspT107I	GGYRCC	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	593
BspTNI	GGTCTC	2 cut(s)	876, 994
BsrDI	GCAATG	4 cut(s)	156, 744, 914, 978
BsrI	ACTGG	3 cut(s)	506, 748, 811
BssECI	CCNNGG	2 cut(s)	537, 922
BssNAI	GTATAC	1 cut(s)	430
BssT1I	CCWWGG	2 cut(s)	537, 922
Bst1107I	GTATAC	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	401, 887
BstAFI	CTTAAG	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	356, 454, 729
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	1 cut(s)	628
BstFNI	CGCG	1 cut(s)	183
BstMAI	GTCTC	2 cut(s)	876, 994
BstMWI	GCNNNNNNNGC	3 cut(s)	530, 533, 968
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	442
BstPI	GGTNACC	1 cut(s)	623
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	3 cut(s)	264, 727, 868
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	7 cut(s)	173, 181, 203, 511, 520, 823, 955
BstV2I	GAAGAC	2 cut(s)	113, 465
BstX2I	RGATCY	2 cut(s)	81, 449
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	2 cut(s)	81, 449
BstZ17I	GTATAC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	866
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	1 cut(s)	804
BtuMI	TCGCGA	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	3 cut(s)	665, 864, 865
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	4 cut(s)	439, 470, 686, 861
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	3 cut(s)	356, 454, 729
Eco130I	CCWWGG	2 cut(s)	537, 922
Eco24I	GRGCYC	1 cut(s)	868
Eco31I	GGTCTC	2 cut(s)	876, 994
Eco47I	GGWCC	1 cut(s)	665
Eco91I	GGTNACC	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	665
EcoO65I	GGTNACC	1 cut(s)	623
EcoRI	GAATTC	2 cut(s)	332, 1130
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	2 cut(s)	537, 922
EcoT38I	GRGCYC	1 cut(s)	868
ErhI	CCWWGG	2 cut(s)	537, 922
FaeI	CATG	4 cut(s)	442, 473, 689, 864
FaqI	GGGAC	1 cut(s)	855
FatI	CATG	4 cut(s)	438, 469, 685, 860
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	2 cut(s)	429, 1109
Fnu4HI	GCNGC	8 cut(s)	145, 162, 192, 195, 525, 534, 837, 969
FokI	GGATG	1 cut(s)	615
FriOI	GRGCYC	1 cut(s)	868
Fsp4HI	GCNGC	8 cut(s)	145, 162, 192, 195, 525, 534, 837, 969
FspBI	CTAG	2 cut(s)	696, 1116
GluI	GCNGC	8 cut(s)	145, 162, 192, 195, 525, 534, 837, 969
GsaI	CCCAGC	1 cut(s)	843
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	866
Hin1II	CATG	4 cut(s)	442, 473, 689, 864
HincII	GTYRAC	2 cut(s)	385, 749
HindII	GTYRAC	2 cut(s)	385, 749
HinfI	GANTC	4 cut(s)	61, 305, 376, 1074
HphI	GGTGA	2 cut(s)	242, 359
Hpy166II	GTNNAC	4 cut(s)	385, 430, 749, 1110
Hpy188I	TCNGA	8 cut(s)	81, 97, 151, 417, 643, 766, 936, 1136
Hpy188III	TCNNGA	7 cut(s)	21, 182, 281, 295, 587, 1078, 1122
Hpy8I	GTNNAC	4 cut(s)	385, 430, 749, 1110
HpyAV	CCTTC	4 cut(s)	122, 227, 614, 1119
HpyCH4III	ACNGT	2 cut(s)	401, 887
HpyCH4V	TGCA	7 cut(s)	41, 161, 197, 556, 737, 860, 971
HpyF10VI	GCNNNNNNNGC	3 cut(s)	530, 533, 968
HpyF3I	CTNAG	3 cut(s)	356, 454, 729
Hsp92II	CATG	4 cut(s)	442, 473, 689, 864
Ksp22I	TGATCA	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	924
Lsp1109I	GCAGC	7 cut(s)	173, 181, 203, 511, 520, 823, 955
MaeI	CTAG	2 cut(s)	696, 1116
MaeIII	GTNAC	2 cut(s)	623, 1021
MboII	GAAGA	6 cut(s)	58, 61, 64, 118, 470, 822
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	2 cut(s)	81, 449
MhlI	GDGCHC	4 cut(s)	264, 602, 727, 868
MlyI	GAGTC	2 cut(s)	70, 1083
MnlI	CCTC	7 cut(s)	230, 251, 411, 582, 933, 1071, 1114
MseI	TTAA	6 cut(s)	29, 122, 350, 389, 594, 1032
MslI	CAYNNNNRTG	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	819
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	3 cut(s)	530, 533, 968
NlaIII	CATG	4 cut(s)	442, 473, 689, 864
NlaIV	GGNNCC	4 cut(s)	263, 451, 709, 866
NmuCI	GTSAC	1 cut(s)	1021
NruI	TCGCGA	1 cut(s)	183
NspI	RCATGY	1 cut(s)	442
PcsI	WCGNNNNNNNCGW	1 cut(s)	1103
PfeI	GAWTC	2 cut(s)	305, 376
PkrI	GCNGC	8 cut(s)	146, 163, 193, 196, 526, 535, 838, 970
PleI	GAGTC	2 cut(s)	69, 1082
PpsI	GAGTC	2 cut(s)	69, 1082
PpuMI	RGGWCCY	1 cut(s)	665
PshBI	ATTAAT	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	623
PspFI	CCCAGC	1 cut(s)	839
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	4 cut(s)	263, 451, 709, 866
PspOMI	GGGCCC	1 cut(s)	864
PspPI	GGNCC	3 cut(s)	665, 864, 865
PspPPI	RGGWCCY	1 cut(s)	665
PsuI	RGATCY	2 cut(s)	81, 449
PvuII	CAGCTG	1 cut(s)	194
RruI	TCGCGA	1 cut(s)	183
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	6 cut(s)	29, 122, 350, 389, 594, 1032
SatI	GCNGC	8 cut(s)	145, 162, 192, 195, 525, 534, 837, 969
Sau96I	GGNCC	3 cut(s)	665, 864, 865
SchI	GAGTC	2 cut(s)	70, 1083
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	4 cut(s)	264, 602, 727, 868
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	593, 1062
SmoI	CTYRAG	2 cut(s)	593, 1062
SsiI	CCGC	2 cut(s)	144, 962
SspMI	CTAG	2 cut(s)	696, 1116
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	2 cut(s)	537, 922
TaaI	ACNGT	2 cut(s)	401, 887
TaqI	TCGA	3 cut(s)	342, 498, 1072
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	305, 376
Tru1I	TTAA	6 cut(s)	29, 122, 350, 389, 594, 1032
Tru9I	TTAA	6 cut(s)	29, 122, 350, 389, 594, 1032
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	7 cut(s)	161, 191, 194, 524, 533, 836, 968
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	2 cut(s)	530, 633
TspRI	CASTG	1 cut(s)	811
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	665
VspI	ATTAAT	1 cut(s)	350
XapI	RAATTY	5 cut(s)	112, 205, 332, 893, 1130
XceI	RCATGY	1 cut(s)	442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XmiI	GTMKAC	2 cut(s)	429, 1109
XspI	CTAG	2 cut(s)	696, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.