Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Forward (+)

15005712 .. 15008035

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g12540.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGTTGGATGATGATTCCCTGTTCTGGTAATTCCAACACTAAAGCCAAGAAGAAAAGGAAGAACAAGATTGAGTTGCAGGAAAAGCCACTTGATCAGATCAAACCCACTTCAGGTTTTTCAAAGACTAATTCCATCTTGAGTGTCAAGGAGGATCCGAAAGATGGGGGGTCTGATCACATTGCAGCACAGACTTTTGCATTCCGTGAATTGGCAGCCGCAACTAGAAATTTCAGGTCAGAATGTCTATTGGGTGAGGGTGGATTTGGTCGAGTATACAAAGGACGTTTGGAAAGTACCAATCAGGTAGTAGCTATCAAACAACTTGATCGTTATGGATTCCAAGGGAACAGGGAATTCCTTGTTGAAGTGTTGATGTTGAGTCTTCTTCACCATCCCAATCTTGTTAATCTTACTGGTTATTGTGCGGATGGAGATCAAAGGCTTCTCGTTTATGAATATATGCCCCTAGGGTCTTTGGACGACCATTTACATGATGTGTCACCTGGTAAGAGACGACTTGATTGGAATACACGAATGAAAATAGCCGCTGGAGCAGCAAAGGGATTGGAGTATCTACATGACAAAGCAAGTCCTCCTGTTATATACAGAGATTTGAAATGCTCCAACATATTACTCGGTGAAGGATATCATCCAAAGCTGTCTGATTTTGGTTTAGCCAAACTTGGGCCTGTTGGGGATAACACCCATGTATCTACAAGGGTTATGGGAACGTATGGATATTGTGCTCCAGAGTATGCAATGACAGGGCAGTTGACTCTTAAATCAGACGTTTATAGCTTTGGCGTAGTTCTTTTGGAAATTATAACAGGCAGGAGAGCGATTGACAATACCAGAGGTACAGGAGAACAGAATTTGGTTGCATGGGCAAGACCCTTGTTTAAAGACCGAAAGAAATTTTCACAAATGGCAGACCCAACGCTCCAGGGTCAGTATCCCCCAAGGGGCTTGTACCAAGCTCTTGCAGTTGCAGCAATGTGTGTTCAGGAGCAGCCTAATATGCGGCCAGTTATAGCTGATGTCGTCACAGCTTTGACTTACCTTGCTTCACAGAAGTATGACCCTGAAACGCAGCCAGTCCAAAGCTCACGTCTTGCCCCTTGTACCCCCACTAGAACCAAGAGGGATACTGAAAGGAAAGCTCAATTGTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

392

Amino Acids

43.56

Weight (kDa)

9.25

Isoelectric Point (pI)

34.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	827
AccI	GTMKAC	1 cut(s)	276
AciI	CCGC	4 cut(s)	219, 428, 549, 1024
AclWI	GGATC	2 cut(s)	149, 162
AcoI	YGGCCR	1 cut(s)	1025
AcsI	RAATTY	4 cut(s)	229, 356, 874, 917
AcuI	CTGAAG	1 cut(s)	96
AfaI	GTAC	4 cut(s)	298, 862, 974, 1126
AfiI	CCNNNNNNNGG	6 cut(s)	26, 113, 164, 211, 687, 965
AgsI	TTSAA	3 cut(s)	123, 368, 619
AjiI	CACGTC	1 cut(s)	1112
AjnI	CCWGG	2 cut(s)	505, 945
AluBI	AGCT	8 cut(s)	314, 661, 801, 980, 1037, 1052, 1107, 1163
AluI	AGCT	8 cut(s)	314, 661, 801, 980, 1037, 1052, 1107, 1163
Alw21I	GWGCWC	1 cut(s)	751
Alw26I	GTCTC	1 cut(s)	508
AlwI	GGATC	2 cut(s)	149, 162
AoxI	GGCC	2 cut(s)	689, 1025
ApeKI	GCWGC	6 cut(s)	185, 215, 557, 992, 1012, 1093
ApoI	RAATTY	4 cut(s)	229, 356, 874, 917
ArsI	GACNNNNNNTTYG	2 cut(s)	1096, 1128
AspA2I	CCTAGG	1 cut(s)	469
AspS9I	GGNCC	1 cut(s)	689
AsuHPI	GGTGA	4 cut(s)	266, 383, 495, 653
AvrII	CCTAGG	1 cut(s)	469
BaeI	ACNNNNGTAYC	2 cut(s)	696, 729
BamHI	GGATCC	1 cut(s)	154
BbsI	GAAGAC	1 cut(s)	377
Bbv12I	GWGCWC	1 cut(s)	751
BbvI	GCAGC	6 cut(s)	197, 227, 569, 1004, 1024, 1105
BccI	CCATC	4 cut(s)	143, 158, 402, 425
BciT130I	CCWGG	2 cut(s)	507, 947
BciVI	GTATCC	2 cut(s)	966, 1141
BclI	TGATCA	2 cut(s)	94, 175
BcoDI	GTCTC	1 cut(s)	508
BfaI	CTAG	3 cut(s)	225, 470, 1134
BfuI	GTATCC	2 cut(s)	966, 1141
BisI	GCNGC	9 cut(s)	186, 216, 219, 549, 558, 993, 1013, 1025, 1094
BlnI	CCTAGG	1 cut(s)	469
BlsI	GCNGC	9 cut(s)	187, 217, 220, 550, 559, 994, 1014, 1026, 1095
Bme1390I	CCNGG	2 cut(s)	507, 947
BmgBI	CACGTC	1 cut(s)	1112
BmgT120I	GGNCC	1 cut(s)	689
BmiI	GGNNCC	1 cut(s)	156
BmrFI	CCNGG	2 cut(s)	507, 947
BpiI	GAAGAC	1 cut(s)	377
BpmI	CTGGAG	3 cut(s)	573, 735, 929
BpuEI	CTTGAG	1 cut(s)	160
BsaBI	GATNNNNATC	1 cut(s)	435
BsaJI	CCNNGG	4 cut(s)	343, 469, 946, 962
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 113, 164, 211, 687, 965
Bse1I	ACTGG	3 cut(s)	421, 1028, 1097
Bse3DI	GCAATG	3 cut(s)	180, 768, 1002
Bse8I	GATNNNNATC	1 cut(s)	435
BseBI	CCWGG	2 cut(s)	507, 947
BseDI	CCNNGG	4 cut(s)	343, 469, 946, 962
BseGI	GGATG	4 cut(s)	15, 394, 436, 652
BseJI	GATNNNNATC	1 cut(s)	435
BseLI	CCNNNNNNNGG	6 cut(s)	26, 113, 164, 211, 687, 965
BseMI	GCAATG	3 cut(s)	180, 768, 1002
BseNI	ACTGG	3 cut(s)	421, 1028, 1097
BseXI	GCAGC	6 cut(s)	197, 227, 569, 1004, 1024, 1105
BshFI	GGCC	2 cut(s)	691, 1027
BsiHKAI	GWGCWC	1 cut(s)	751
BslI	CCNNNNNNNGG	6 cut(s)	26, 113, 164, 211, 687, 965
BsmAI	GTCTC	1 cut(s)	508
BsmBI	CGTCTC	1 cut(s)	508
BsmI	GAATGC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	691, 1027
Bsp1286I	GDGCHC	1 cut(s)	751
Bsp143I	GATC	6 cut(s)	94, 99, 154, 175, 328, 436
BspACI	CCGC	4 cut(s)	219, 428, 549, 1024
BspANI	GGCC	2 cut(s)	691, 1027
BspLI	GGNNCC	1 cut(s)	156
BspPI	GGATC	2 cut(s)	149, 162
BsrDI	GCAATG	3 cut(s)	180, 768, 1002
BsrI	ACTGG	3 cut(s)	421, 1028, 1097
BssECI	CCNNGG	4 cut(s)	343, 469, 946, 962
BssMI	GATC	6 cut(s)	94, 99, 154, 175, 328, 436
BssNAI	GTATAC	1 cut(s)	277
BssT1I	CCWWGG	3 cut(s)	343, 469, 962
Bst1107I	GTATAC	1 cut(s)	277
Bst2UI	CCWGG	2 cut(s)	507, 947
BstF5I	GGATG	4 cut(s)	15, 394, 436, 652
BstKTI	GATC	6 cut(s)	97, 102, 157, 178, 331, 439
BstMAI	GTCTC	1 cut(s)	508
BstMBI	GATC	6 cut(s)	94, 99, 154, 175, 328, 436
BstMWI	GCNNNNNNNGC	5 cut(s)	85, 554, 557, 992, 1021
BstNI	CCWGG	2 cut(s)	507, 947
BstSCI	CCNGG	2 cut(s)	505, 945
BstV1I	GCAGC	6 cut(s)	197, 227, 569, 1004, 1024, 1105
BstV2I	GAAGAC	1 cut(s)	377
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BstZ17I	GTATAC	1 cut(s)	277
BsuI	GTATCC	2 cut(s)	966, 1141
BsuRI	GGCC	2 cut(s)	691, 1027
BtrI	CACGTC	1 cut(s)	1112
BtsCI	GGATG	4 cut(s)	15, 394, 436, 652
Cfr13I	GGNCC	1 cut(s)	689
CsiI	ACCWGGT	1 cut(s)	505
Csp6I	GTAC	4 cut(s)	297, 861, 973, 1125
CviAII	CATG	4 cut(s)	494, 581, 710, 885
CviQI	GTAC	4 cut(s)	297, 861, 973, 1125
DpnI	GATC	6 cut(s)	96, 101, 156, 177, 330, 438
DpnII	GATC	6 cut(s)	94, 99, 154, 175, 328, 436
DraI	TTTAAA	1 cut(s)	904
EaeI	YGGCCR	1 cut(s)	1025
Eco130I	CCWWGG	3 cut(s)	343, 469, 962
Eco32I	GATATC	1 cut(s)	650
Eco57I	CTGAAG	1 cut(s)	96
EcoRI	GAATTC	1 cut(s)	356
EcoRII	CCWGG	2 cut(s)	505, 945
EcoRV	GATATC	1 cut(s)	650
EcoT14I	CCWWGG	3 cut(s)	343, 469, 962
ErhI	CCWWGG	3 cut(s)	343, 469, 962
Esp3I	CGTCTC	1 cut(s)	508
FaeI	CATG	4 cut(s)	497, 584, 713, 888
FatI	CATG	4 cut(s)	493, 580, 709, 884
FbaI	TGATCA	2 cut(s)	94, 175
FblI	GTMKAC	1 cut(s)	276
Fnu4HI	GCNGC	9 cut(s)	186, 216, 219, 549, 558, 993, 1013, 1025, 1094
FokI	GGATG	4 cut(s)	22, 381, 443, 639
Fsp4HI	GCNGC	9 cut(s)	186, 216, 219, 549, 558, 993, 1013, 1025, 1094
FspBI	CTAG	3 cut(s)	225, 470, 1134
GluI	GCNGC	9 cut(s)	186, 216, 219, 549, 558, 993, 1013, 1025, 1094
GsuI	CTGGAG	3 cut(s)	573, 735, 929
HaeIII	GGCC	2 cut(s)	691, 1027
Hin1II	CATG	4 cut(s)	497, 584, 713, 888
HincII	GTYRAC	1 cut(s)	777
HindII	GTYRAC	1 cut(s)	777
HinfI	GANTC	4 cut(s)	16, 339, 382, 778
HphI	GGTGA	4 cut(s)	266, 383, 495, 653
Hpy166II	GTNNAC	2 cut(s)	277, 777
Hpy188I	TCNGA	6 cut(s)	99, 159, 175, 241, 667, 790
Hpy188III	TCNNGA	3 cut(s)	139, 752, 1007
Hpy8I	GTNNAC	2 cut(s)	277, 777
HpyAV	CCTTC	1 cut(s)	638
HpyCH4IV	ACGT	4 cut(s)	286, 734, 792, 1111
HpyCH4V	TGCA	7 cut(s)	79, 185, 200, 761, 884, 986, 992
HpyF10VI	GCNNNNNNNGC	5 cut(s)	85, 554, 557, 992, 1021
HpySE526I	ACGT	4 cut(s)	286, 734, 792, 1111
Hsp92II	CATG	4 cut(s)	497, 584, 713, 888
Ksp22I	TGATCA	2 cut(s)	94, 175
Kzo9I	GATC	6 cut(s)	94, 99, 154, 175, 328, 436
LmnI	GCTCC	5 cut(s)	554, 629, 754, 948, 1009
Lsp1109I	GCAGC	6 cut(s)	197, 227, 569, 1004, 1024, 1105
MabI	ACCWGGT	1 cut(s)	505
MaeI	CTAG	3 cut(s)	225, 470, 1134
MaeII	ACGT	4 cut(s)	286, 734, 792, 1111
MaeIII	GTNAC	2 cut(s)	501, 1045
MalI	GATC	6 cut(s)	96, 101, 156, 177, 330, 438
MboI	GATC	6 cut(s)	94, 99, 154, 175, 328, 436
MboII	GAAGA	4 cut(s)	64, 73, 377, 380
MfeI	CAATTG	1 cut(s)	1166
MflI	RGATCY	1 cut(s)	154
MhlI	GDGCHC	1 cut(s)	751
MluCI	AATT	9 cut(s)	31, 130, 209, 229, 356, 822, 874, 917, 1166
MlyI	GAGTC	2 cut(s)	391, 772
MmeI	TCCRAC	2 cut(s)	60, 651
MnlI	CCTC	5 cut(s)	145, 250, 606, 851, 1137
MseI	TTAA	3 cut(s)	408, 783, 903
MslI	CAYNNNNRTG	1 cut(s)	492
MspA1I	CMGCKG	1 cut(s)	551
MspR9I	CCNGG	2 cut(s)	507, 947
MunI	CAATTG	1 cut(s)	1166
Mva1269I	GAATGC	1 cut(s)	200
MvaI	CCWGG	2 cut(s)	507, 947
MwoI	GCNNNNNNNGC	5 cut(s)	85, 554, 557, 992, 1021
NdeII	GATC	6 cut(s)	94, 99, 154, 175, 328, 436
NlaIII	CATG	4 cut(s)	497, 584, 713, 888
NlaIV	GGNNCC	1 cut(s)	156
NmuCI	GTSAC	2 cut(s)	501, 1045
PctI	GAATGC	1 cut(s)	200
PfeI	GAWTC	2 cut(s)	16, 339
PkrI	GCNGC	9 cut(s)	187, 217, 220, 550, 559, 994, 1014, 1026, 1095
PleI	GAGTC	2 cut(s)	390, 772
PpsI	GAGTC	2 cut(s)	390, 772
PsiI	TTATAA	1 cut(s)	827
Psp6I	CCWGG	2 cut(s)	505, 945
PspGI	CCWGG	2 cut(s)	505, 945
PspN4I	GGNNCC	1 cut(s)	156
PspPI	GGNCC	1 cut(s)	689
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	4 cut(s)	298, 862, 974, 1126
RsaNI	GTAC	4 cut(s)	297, 861, 973, 1125
RseI	CAYNNNNRTG	1 cut(s)	492
SaqAI	TTAA	3 cut(s)	408, 783, 903
SatI	GCNGC	9 cut(s)	186, 216, 219, 549, 558, 993, 1013, 1025, 1094
Sau3AI	GATC	6 cut(s)	94, 99, 154, 175, 328, 436
Sau96I	GGNCC	1 cut(s)	689
SchI	GAGTC	2 cut(s)	391, 772
ScrFI	CCNGG	2 cut(s)	507, 947
SduI	GDGCHC	1 cut(s)	751
SexAI	ACCWGGT	1 cut(s)	505
SmiMI	CAYNNNNRTG	1 cut(s)	492
SmlI	CTYRAG	1 cut(s)	139
SmoI	CTYRAG	1 cut(s)	139
Sse9I	AATT	9 cut(s)	31, 130, 209, 229, 356, 822, 874, 917, 1166
SsiI	CCGC	4 cut(s)	219, 428, 549, 1024
SspMI	CTAG	3 cut(s)	225, 470, 1134
StyD4I	CCNGG	2 cut(s)	505, 945
StyI	CCWWGG	3 cut(s)	343, 469, 962
TaiI	ACGT	4 cut(s)	289, 737, 795, 1114
TaqI	TCGA	1 cut(s)	271
TaqII	GACCGA	1 cut(s)	924
TasI	AATT	9 cut(s)	31, 130, 209, 229, 356, 822, 874, 917, 1166
TauI	GCSGC	3 cut(s)	221, 551, 1027
TfiI	GAWTC	2 cut(s)	16, 339
Tru1I	TTAA	3 cut(s)	408, 783, 903
Tru9I	TTAA	3 cut(s)	408, 783, 903
TseFI	GTSAC	2 cut(s)	501, 1045
TseI	GCWGC	6 cut(s)	185, 215, 557, 992, 1012, 1093
Tsp45I	GTSAC	2 cut(s)	501, 1045
TspDTI	ATGAA	2 cut(s)	471, 554
TspGWI	ACGGA	1 cut(s)	194
XapI	RAATTY	4 cut(s)	229, 356, 874, 917
XmaJI	CCTAGG	1 cut(s)	469
XmiI	GTMKAC	1 cut(s)	276
XspI	CTAG	3 cut(s)	225, 470, 1134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.