Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Forward (+)

7373539 .. 7374008

Gene Structure 470 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0094200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGGAGTCGCCAAGCAACATGGACTGTCCCCCTCCACTCTGTGCAAGAGGTTGCGGTTTCTTTGGGACTTCGGCAAACAAGAATATGTGCTCAAAGTGCTACACGGACCTACTGCAGCGCGGGCTGTGCTGGTGGCGCGCTTCAGTGGAAAAAACCCTAGTCGTCGCTGTTTCTGCTAGCGAGTCGTCTTCAAGTACTGCAACTAGTGATCAGCGCCCTTGTGGTGTGACAAAGAATAGGTGCCAGAGCTGCGATTGCAACAAGAAACTTAAGCCGGTGCAAATGACGTTAAAATGCCGCTGTGGTGGAGTGTTTTGTGCAGAGCATAGGTTGGCTGAATCCCACACATGTAGTGTGAATTACAAGAAGGCTGGACAAGAGCTTTTGACCAAGCAAAACCCAGTTTGCAAGGGTGAAAAGTTAGAATCGAGGGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

145

Amino Acids

15.85

Weight (kDa)

8.92

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-A20	PF01754	13 - 34	1e-10	A20-like zinc finger
zf-AN1	PF01428	81 - 121	1.2e-08	AN1-like Zinc finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	240
AccII	CGCG	2 cut(s)	120, 138
AciI	CCGC	3 cut(s)	54, 120, 298
AcuI	CTGAAG	1 cut(s)	126
AdeI	CACNNNGTG	1 cut(s)	41
AfaI	GTAC	1 cut(s)	196
AflII	CTTAAG	1 cut(s)	269
AflIII	ACRYGT	1 cut(s)	347
AgsI	TTSAA	1 cut(s)	192
AhlI	ACTAGT	1 cut(s)	203
AluBI	AGCT	2 cut(s)	249, 382
AluI	AGCT	2 cut(s)	249, 382
Alw21I	GWGCWC	1 cut(s)	92
ApeKI	GCWGC	2 cut(s)	115, 249
AspLEI	GCGC	4 cut(s)	120, 138, 140, 216
AspS9I	GGNCC	1 cut(s)	106
AsuHPI	GGTGA	1 cut(s)	425
AsuNHI	GCTAGC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	106
BanI	GGYRCC	1 cut(s)	240
BbsI	GAAGAC	1 cut(s)	180
Bbv12I	GWGCWC	1 cut(s)	92
BbvI	GCAGC	2 cut(s)	127, 236
BclI	TGATCA	1 cut(s)	208
BcuI	ACTAGT	1 cut(s)	203
BfaI	CTAG	3 cut(s)	158, 177, 204
BfmI	CTRYAG	1 cut(s)	113
BfoI	RGCGCY	1 cut(s)	217
BfrI	CTTAAG	1 cut(s)	269
BisI	GCNGC	3 cut(s)	116, 250, 298
BlsI	GCNGC	3 cut(s)	117, 251, 299
BmcAI	AGTACT	1 cut(s)	196
Bme18I	GGWCC	1 cut(s)	106
BmgT120I	GGNCC	1 cut(s)	106
BmiI	GGNNCC	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	395
BmtI	GCTAGC	1 cut(s)	180
BmuI	ACTGGG	1 cut(s)	395
BpiI	GAAGAC	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	274
Bse1I	ACTGG	1 cut(s)	401
BseNI	ACTGG	1 cut(s)	401
BsePI	GCGCGC	1 cut(s)	136
BseXI	GCAGC	2 cut(s)	127, 236
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	2 cut(s)	120, 138
BshNI	GGYRCC	1 cut(s)	240
BsiHKAI	GWGCWC	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	275
BslFI	GGGAC	2 cut(s)	12, 79
BsmFI	GGGAC	2 cut(s)	12, 79
Bsp1286I	GDGCHC	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	208
BspACI	CCGC	3 cut(s)	54, 120, 298
BspFNI	CGCG	2 cut(s)	120, 138
BspLI	GGNNCC	1 cut(s)	242
BspMAI	CTGCAG	1 cut(s)	117
BspOI	GCTAGC	1 cut(s)	180
BspT107I	GGYRCC	1 cut(s)	240
BspTI	CTTAAG	1 cut(s)	269
BsrFI	RCCGGY	1 cut(s)	274
BsrI	ACTGG	1 cut(s)	401
BssAI	RCCGGY	1 cut(s)	274
BssHII	GCGCGC	1 cut(s)	136
BssMI	GATC	1 cut(s)	208
Bst4CI	ACNGT	1 cut(s)	26
BstAFI	CTTAAG	1 cut(s)	269
BstC8I	GCNNGC	3 cut(s)	122, 138, 178
BstFNI	CGCG	2 cut(s)	120, 138
BstH2I	RGCGCY	1 cut(s)	217
BstHHI	GCGC	4 cut(s)	120, 138, 140, 216
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	7 cut(s)	96, 121, 126, 135, 173, 249, 255
BstNSI	RCATGY	1 cut(s)	351
BstSFI	CTRYAG	1 cut(s)	113
BstUI	CGCG	2 cut(s)	120, 138
BstV1I	GCAGC	2 cut(s)	127, 236
BstV2I	GAAGAC	1 cut(s)	180
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	3 cut(s)	122, 138, 178
CfoI	GCGC	4 cut(s)	120, 138, 140, 216
Cfr10I	RCCGGY	1 cut(s)	274
Cfr13I	GGNCC	1 cut(s)	106
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	2 cut(s)	19, 348
CviJI	RGCY	6 cut(s)	124, 249, 274, 335, 371, 382
CviKI_1	RGCY	6 cut(s)	124, 249, 274, 335, 371, 382
CviQI	GTAC	1 cut(s)	195
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
DraIII	CACNNNGTG	1 cut(s)	41
Eco47I	GGWCC	1 cut(s)	106
Eco57I	CTGAAG	1 cut(s)	126
FaeI	CATG	2 cut(s)	22, 351
FaiI	YATR	4 cut(s)	20, 86, 327, 349
FaqI	GGGAC	2 cut(s)	12, 79
FatI	CATG	2 cut(s)	18, 347
FauI	CCCGC	1 cut(s)	113
FbaI	TGATCA	1 cut(s)	208
Fnu4HI	GCNGC	3 cut(s)	116, 250, 298
Fsp4HI	GCNGC	3 cut(s)	116, 250, 298
FspBI	CTAG	3 cut(s)	158, 177, 204
GlaI	GCGC	4 cut(s)	119, 137, 139, 215
GluI	GCNGC	3 cut(s)	116, 250, 298
HaeII	RGCGCY	1 cut(s)	217
HapII	CCGG	1 cut(s)	275
HhaI	GCGC	4 cut(s)	120, 138, 140, 216
Hin1II	CATG	2 cut(s)	22, 351
Hin6I	GCGC	4 cut(s)	118, 136, 138, 214
HinP1I	GCGC	4 cut(s)	118, 136, 138, 214
HinfI	GANTC	4 cut(s)	5, 182, 338, 425
HpaII	CCGG	1 cut(s)	275
HphI	GGTGA	1 cut(s)	425
Hpy99I	CGWCG	1 cut(s)	167
HpyAV	CCTTC	1 cut(s)	361
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4IV	ACGT	1 cut(s)	287
HpyCH4V	TGCA	7 cut(s)	44, 115, 200, 258, 280, 320, 408
HpyF10VI	GCNNNNNNNGC	7 cut(s)	96, 121, 126, 135, 173, 249, 255
HpySE526I	ACGT	1 cut(s)	287
Hsp92II	CATG	2 cut(s)	22, 351
HspAI	GCGC	4 cut(s)	118, 136, 138, 214
Ksp22I	TGATCA	1 cut(s)	208
Kzo9I	GATC	1 cut(s)	208
LpnPI	CCDG	5 cut(s)	115, 257, 288, 357, 414
Lsp1109I	GCAGC	2 cut(s)	127, 236
MaeI	CTAG	3 cut(s)	158, 177, 204
MaeII	ACGT	1 cut(s)	287
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MboII	GAAGA	1 cut(s)	180
MhlI	GDGCHC	1 cut(s)	92
MluCI	AATT	1 cut(s)	358
MlyI	GAGTC	2 cut(s)	14, 191
MnlI	CCTC	3 cut(s)	41, 42, 423
MseI	TTAA	2 cut(s)	270, 290
MspA1I	CMGCKG	1 cut(s)	300
MspCI	CTTAAG	1 cut(s)	269
MspI	CCGG	1 cut(s)	275
MvnI	CGCG	2 cut(s)	120, 138
MwoI	GCNNNNNNNGC	7 cut(s)	96, 121, 126, 135, 173, 249, 255
NdeII	GATC	1 cut(s)	208
NheI	GCTAGC	1 cut(s)	176
NlaIII	CATG	2 cut(s)	22, 351
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	1 cut(s)	226
NspI	RCATGY	1 cut(s)	351
PauI	GCGCGC	1 cut(s)	136
PciI	ACATGT	1 cut(s)	347
PfeI	GAWTC	2 cut(s)	338, 425
PkrI	GCNGC	3 cut(s)	117, 251, 299
PleI	GAGTC	2 cut(s)	13, 190
PpsI	GAGTC	2 cut(s)	13, 190
PscI	ACATGT	1 cut(s)	347
PspN4I	GGNNCC	1 cut(s)	242
PspPI	GGNCC	1 cut(s)	106
PstI	CTGCAG	1 cut(s)	117
PteI	GCGCGC	1 cut(s)	136
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SaqAI	TTAA	2 cut(s)	270, 290
SatI	GCNGC	3 cut(s)	116, 250, 298
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	1 cut(s)	106
ScaI	AGTACT	1 cut(s)	196
SchI	GAGTC	2 cut(s)	14, 191
SduI	GDGCHC	1 cut(s)	92
SetI	ASST	7 cut(s)	52, 111, 242, 251, 290, 332, 384
SfcI	CTRYAG	1 cut(s)	113
SinI	GGWCC	1 cut(s)	106
SmlI	CTYRAG	1 cut(s)	269
SmoI	CTYRAG	1 cut(s)	269
SpeI	ACTAGT	1 cut(s)	203
Sse9I	AATT	1 cut(s)	358
SsiI	CCGC	3 cut(s)	54, 120, 298
SspMI	CTAG	3 cut(s)	158, 177, 204
TaaI	ACNGT	1 cut(s)	26
TaiI	ACGT	1 cut(s)	290
TaqI	TCGA	1 cut(s)	428
TasI	AATT	1 cut(s)	358
TatI	WGTACW	1 cut(s)	194
TauI	GCSGC	1 cut(s)	300
TfiI	GAWTC	2 cut(s)	338, 425
Tru1I	TTAA	2 cut(s)	270, 290
Tru9I	TTAA	2 cut(s)	270, 290
TscAI	CASTG	1 cut(s)	150
TseFI	GTSAC	1 cut(s)	226
TseI	GCWGC	2 cut(s)	115, 249
Tsp45I	GTSAC	1 cut(s)	226
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	150
Vha464I	CTTAAG	1 cut(s)	269
VpaK11BI	GGWCC	1 cut(s)	106
XceI	RCATGY	1 cut(s)	351
XspI	CTAG	3 cut(s)	158, 177, 204
ZrmI	AGTACT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.