Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Forward (+)

13075854 .. 13077502

Gene Structure 1649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10290.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 573 bp

ATGCACAGAAATTTGAAAAGCTCCAACATATTGCTCGGTGAAGGGTATCATCCAAAGCTGTCTGATTTTGGTTTAGCCAAACTTGGGCCTGTTGGGGATAACACTACGGTTACGATAAATATTGGATATTGTGCTCCAGAGTATGGAATGACAGGGCAATTGACTCTTAAATCAGACGTTTATAGCTTTGGCGTAGTTCTTTTGGAAATTATAACAGGCAGGACAGCGATTGACAATACCAGAGGTGCAGGAGAACAGATTTTGGTTGCGTGGGTAAGAAATTCCGCAAGAACCTTATTTAAAGGCCGAAAGAAACTTTCGCAAATGGCAGACCCAACGCTCGAGGGTCAGTATCCCCAAAGGGGGTTGTACCAAGCTCTTGCAGTTGCGGCAATGTGTGTTCAGGAGAAGCCTAATATGCGGCCAGTTATAGCTGATGTCGTCACAGCTTTGACTTACCTTGCTTCACAGAAGTATGACCATGAAACAGAGCCAGTCCAAGGCTCCCGTCTTGCCCCTTGTACTCCCTCTAGAACCAAGAGGGATATTGAAAAGGAAGCTCAATTGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

191

Amino Acids

20.91

Weight (kDa)

8.96

Isoelectric Point (pI)

35.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	1 - 150	2.9e-17	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	1 - 147	1.3e-16	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	212
AccB7I	CCANNNNNTGG	1 cut(s)	143
AciI	CCGC	3 cut(s)	285, 389, 421
AcoI	YGGCCR	1 cut(s)	422
AcsI	RAATTY	2 cut(s)	10, 280
AfaI	GTAC	2 cut(s)	371, 523
AfiI	CCNNNNNNNGG	5 cut(s)	84, 143, 362, 363, 500
AgsI	TTSAA	2 cut(s)	16, 551
AluBI	AGCT	7 cut(s)	21, 58, 186, 377, 434, 449, 560
AluI	AGCT	7 cut(s)	21, 58, 186, 377, 434, 449, 560
Alw21I	GWGCWC	1 cut(s)	136
Ama87I	CYCGRG	1 cut(s)	341
AoxI	GGCC	3 cut(s)	86, 304, 422
ApoI	RAATTY	2 cut(s)	10, 280
AspS9I	GGNCC	1 cut(s)	86
AsuHPI	GGTGA	1 cut(s)	50
AvaI	CYCGRG	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	136
BciVI	GTATCC	1 cut(s)	363
BfaI	CTAG	1 cut(s)	531
BfuI	GTATCC	1 cut(s)	363
BisI	GCNGC	2 cut(s)	390, 422
BlsI	GCNGC	2 cut(s)	391, 423
BmeT110I	CYCGRG	1 cut(s)	341
BmgT120I	GGNCC	1 cut(s)	86
BmiI	GGNNCC	1 cut(s)	505
BpmI	CTGGAG	1 cut(s)	120
BsaJI	CCNNGG	1 cut(s)	499
Bsc4I	CCNNNNNNNGG	5 cut(s)	84, 143, 362, 363, 500
Bse1I	ACTGG	2 cut(s)	425, 494
Bse3DI	GCAATG	1 cut(s)	399
BseDI	CCNNGG	1 cut(s)	499
BseGI	GGATG	1 cut(s)	49
BseLI	CCNNNNNNNGG	5 cut(s)	84, 143, 362, 363, 500
BseMI	GCAATG	1 cut(s)	399
BseNI	ACTGG	2 cut(s)	425, 494
BsgI	GTGCAG	1 cut(s)	267
BshFI	GGCC	3 cut(s)	88, 306, 424
BsiHKAI	GWGCWC	1 cut(s)	136
BsiHKCI	CYCGRG	1 cut(s)	341
BslI	CCNNNNNNNGG	5 cut(s)	84, 143, 362, 363, 500
BsnI	GGCC	3 cut(s)	88, 306, 424
BsoBI	CYCGRG	1 cut(s)	341
Bsp1286I	GDGCHC	1 cut(s)	136
BspACI	CCGC	3 cut(s)	285, 389, 421
BspANI	GGCC	3 cut(s)	88, 306, 424
BspLI	GGNNCC	1 cut(s)	505
BsrDI	GCAATG	1 cut(s)	399
BsrI	ACTGG	2 cut(s)	425, 494
BssECI	CCNNGG	1 cut(s)	499
BssT1I	CCWWGG	1 cut(s)	499
Bst4CI	ACNGT	1 cut(s)	109
BstF5I	GGATG	1 cut(s)	49
BstMWI	GCNNNNNNNGC	2 cut(s)	389, 418
BsuI	GTATCC	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	88, 306, 424
BtsCI	GGATG	1 cut(s)	49
Cfr13I	GGNCC	1 cut(s)	86
Csp6I	GTAC	2 cut(s)	370, 522
CviAII	CATG	1 cut(s)	482
CviQI	GTAC	2 cut(s)	370, 522
DraI	TTTAAA	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	422
Eco130I	CCWWGG	1 cut(s)	499
Eco88I	CYCGRG	1 cut(s)	341
EcoT14I	CCWWGG	1 cut(s)	499
ErhI	CCWWGG	1 cut(s)	499
FaeI	CATG	1 cut(s)	485
FaiI	YATR	8 cut(s)	29, 144, 183, 212, 419, 431, 477, 483
FatI	CATG	1 cut(s)	481
Fnu4HI	GCNGC	2 cut(s)	390, 422
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	2 cut(s)	390, 422
FspBI	CTAG	1 cut(s)	531
GluI	GCNGC	2 cut(s)	390, 422
GsuI	CTGGAG	1 cut(s)	120
HaeIII	GGCC	3 cut(s)	88, 306, 424
Hin1II	CATG	1 cut(s)	485
HinfI	GANTC	1 cut(s)	163
HphI	GGTGA	1 cut(s)	50
Hpy188I	TCNGA	2 cut(s)	64, 175
Hpy188III	TCNNGA	3 cut(s)	137, 404, 531
HpyAV	CCTTC	1 cut(s)	35
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4IV	ACGT	1 cut(s)	177
HpyCH4V	TGCA	3 cut(s)	4, 248, 383
HpyF10VI	GCNNNNNNNGC	2 cut(s)	389, 418
HpySE526I	ACGT	1 cut(s)	177
Hsp92II	CATG	1 cut(s)	485
LmnI	GCTCC	3 cut(s)	26, 139, 509
MaeI	CTAG	1 cut(s)	531
MaeII	ACGT	1 cut(s)	177
MaeIII	GTNAC	2 cut(s)	109, 442
MfeI	CAATTG	2 cut(s)	158, 563
MhlI	GDGCHC	1 cut(s)	136
MluCI	AATT	5 cut(s)	10, 158, 207, 280, 563
MlyI	GAGTC	1 cut(s)	157
MmeI	TCCRAC	1 cut(s)	48
MnlI	CCTC	4 cut(s)	236, 337, 534, 538
MseI	TTAA	2 cut(s)	168, 300
MunI	CAATTG	2 cut(s)	158, 563
MwoI	GCNNNNNNNGC	2 cut(s)	389, 418
NlaIII	CATG	1 cut(s)	485
NlaIV	GGNNCC	1 cut(s)	505
NmuCI	GTSAC	1 cut(s)	442
PaeR7I	CTCGAG	1 cut(s)	341
PflMI	CCANNNNNTGG	1 cut(s)	143
PkrI	GCNGC	2 cut(s)	391, 423
PleI	GAGTC	1 cut(s)	157
PpsI	GAGTC	1 cut(s)	157
PsiI	TTATAA	1 cut(s)	212
PspN4I	GGNNCC	1 cut(s)	505
PspPI	GGNCC	1 cut(s)	86
PspXI	VCTCGAGB	1 cut(s)	341
RsaI	GTAC	2 cut(s)	371, 523
RsaNI	GTAC	2 cut(s)	370, 522
SaqAI	TTAA	2 cut(s)	168, 300
SatI	GCNGC	2 cut(s)	390, 422
Sau96I	GGNCC	1 cut(s)	86
SchI	GAGTC	1 cut(s)	157
SduI	GDGCHC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	341
SlaI	CTCGAG	1 cut(s)	341
SmlI	CTYRAG	1 cut(s)	341
SmoI	CTYRAG	1 cut(s)	341
Sse9I	AATT	5 cut(s)	10, 158, 207, 280, 563
SsiI	CCGC	3 cut(s)	285, 389, 421
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	1 cut(s)	531
StyI	CCWWGG	1 cut(s)	499
TaaI	ACNGT	1 cut(s)	109
TaiI	ACGT	1 cut(s)	180
TaqI	TCGA	1 cut(s)	342
TasI	AATT	5 cut(s)	10, 158, 207, 280, 563
TatI	WGTACW	1 cut(s)	521
TauI	GCSGC	2 cut(s)	392, 424
Tru1I	TTAA	2 cut(s)	168, 300
Tru9I	TTAA	2 cut(s)	168, 300
TseFI	GTSAC	1 cut(s)	442
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	1 cut(s)	498
Van91I	CCANNNNNTGG	1 cut(s)	143
XapI	RAATTY	2 cut(s)	10, 280
XbaI	TCTAGA	1 cut(s)	530
XhoI	CTCGAG	1 cut(s)	341
XspI	CTAG	1 cut(s)	531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.