Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Forward (+)

35374353 .. 35377351

Gene Structure 2999 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00412910.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGTCTTTTGGGGAGGGTGGCTTTGGTCGAGTATATAAAGGACATTTGGAAAGTATAAATCAGGTAGTAGCTATCAAACAACTTGATCGTAATGGGCTGCAAGGGAACAGGGAATTTCTTGTTGAAGTGTTGATGTTAAGTCTGCTTCACCACCCTAACCTTGTTAATCTTCTCGGTTATTGTGCTGATGGAGATCAAAGGCTCCTTGTTTATGAGTACATGCCCTTAGGATCTTTGGAGGATCATTTACATGATATGTCGCCTGGTAAGAGAAGACTTGATTGGAATACAAGAATGAAGATAGCCGCTGGGTCTGCAAAGGGACTAGAGTATTTACATGACAAAGCAAGTCCTCCTGTGATATACAGAGATTTGAAATGCTCCAACATATTGCTTAATGAAGGGTATCATCCCAAACTGTCTGATTTTGGCTTAGCCAAACTTGGGCCTGTTGGGGACAACACCCACGTTTCTACAAGGGTTATGGGAACCTATGGATATTGTGCTCCAGAGTATGCAATGACAGGCCAATTGACTCTTAAATCAGATGTTTATAGCTTTGGGGTAGTACTTTTGGAAATCATTACTGGCAGAAAGGCAATTGACAATTCTAGAGCTACAGGAGAGCAGAACTTGGTTGCATGGGCAAGACCTTTGTTCAAGGACCGGAAAAAATTTTCACAAATGGCAGACCCAGCGTTACAAGGTCAGTATCCCGCAAGAGGATTATACCAAGCTCTGGCTGTTGCGGCAATGTGTGTTCAGGAGCAGCCTAATATGCGGCCAGTTATAGCTGATGTCGTCACAGCTTTGACATACCTTGCTGCACAAAGGTATGATCCTGAAACACAGCCTCCCCAAAGCTCCCGTCTTGCCCCTTGTACTCCCCCTAGAACCAAGCGGGACAGCGAAAGGAAAGCTCAATGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

310

Amino Acids

34.63

Weight (kDa)

8.83

Isoelectric Point (pI)

37.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	3 - 270	9.8e-47	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 267	5.9e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	739
AciI	CCGC	5 cut(s)	306, 717, 749, 781, 901
AclWI	GGATC	3 cut(s)	238, 249, 833
AcoI	YGGCCR	1 cut(s)	782
AcsI	RAATTY	2 cut(s)	113, 674
AfaI	GTAC	3 cut(s)	218, 570, 883
AfiI	CCNNNNNNNGG	3 cut(s)	444, 722, 739
AgsI	TTSAA	3 cut(s)	125, 376, 661
AjnI	CCWGG	1 cut(s)	262
AjuI	GAANNNNNNNTTGG	2 cut(s)	265, 297
AluBI	AGCT	8 cut(s)	71, 558, 617, 737, 794, 809, 864, 920
AluI	AGCT	8 cut(s)	71, 558, 617, 737, 794, 809, 864, 920
Alw21I	GWGCWC	1 cut(s)	508
AlwI	GGATC	3 cut(s)	238, 249, 833
AoxI	GGCC	3 cut(s)	446, 526, 782
ApeKI	GCWGC	3 cut(s)	97, 769, 824
ApoI	RAATTY	2 cut(s)	113, 674
ArsI	GACNNNNNNTTYG	2 cut(s)	853, 885
AspS9I	GGNCC	2 cut(s)	446, 664
AsuHPI	GGTGA	1 cut(s)	140
AvaII	GGWCC	1 cut(s)	664
AxyI	CCTNAGG	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	3 cut(s)	84, 781, 811
BccI	CCATC	1 cut(s)	182
BciT130I	CCWGG	1 cut(s)	264
BciVI	GTATCC	1 cut(s)	723
BfaI	CTAG	3 cut(s)	326, 612, 891
BfmI	CTRYAG	1 cut(s)	618
BfuI	GTATCC	1 cut(s)	723
BisI	GCNGC	6 cut(s)	98, 306, 750, 770, 782, 825
BlpI	GCTNAGC	1 cut(s)	433
BlsI	GCNGC	6 cut(s)	99, 307, 751, 771, 783, 826
BmcAI	AGTACT	1 cut(s)	570
Bme1390I	CCNGG	1 cut(s)	264
Bme18I	GGWCC	1 cut(s)	664
BmgT120I	GGNCC	2 cut(s)	446, 664
BmiI	GGNNCC	2 cut(s)	203, 490
BmrFI	CCNGG	1 cut(s)	264
BpiI	GAAGAC	1 cut(s)	280
BpmI	CTGGAG	1 cut(s)	492
Bpu1102I	GCTNAGC	1 cut(s)	433
BsaBI	GATNNNNATC	1 cut(s)	192
BsaWI	WCCGGW	1 cut(s)	666
BsaXI	ACNNNNNCTCC	2 cut(s)	838, 868
Bsc4I	CCNNNNNNNGG	3 cut(s)	444, 722, 739
Bse1I	ACTGG	2 cut(s)	592, 785
Bse21I	CCTNAGG	1 cut(s)	226
Bse3DI	GCAATG	2 cut(s)	525, 759
Bse8I	GATNNNNATC	1 cut(s)	192
BseBI	CCWGG	1 cut(s)	264
BseGI	GGATG	1 cut(s)	409
BseJI	GATNNNNATC	1 cut(s)	192
BseLI	CCNNNNNNNGG	3 cut(s)	444, 722, 739
BseMI	GCAATG	2 cut(s)	525, 759
BseNI	ACTGG	2 cut(s)	592, 785
BseXI	GCAGC	3 cut(s)	84, 781, 811
BseYI	CCCAGC	2 cut(s)	308, 694
BsgI	GTGCAG	1 cut(s)	810
BshFI	GGCC	3 cut(s)	448, 528, 784
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	1 cut(s)	667
BslFI	GGGAC	3 cut(s)	336, 470, 917
BslI	CCNNNNNNNGG	3 cut(s)	444, 722, 739
BsmFI	GGGAC	3 cut(s)	336, 470, 917
BsnI	GGCC	3 cut(s)	448, 528, 784
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp143I	GATC	5 cut(s)	85, 193, 230, 241, 838
Bsp1720I	GCTNAGC	1 cut(s)	433
BspACI	CCGC	5 cut(s)	306, 717, 749, 781, 901
BspANI	GGCC	3 cut(s)	448, 528, 784
BspLI	GGNNCC	2 cut(s)	203, 490
BspPI	GGATC	3 cut(s)	238, 249, 833
BsrDI	GCAATG	2 cut(s)	525, 759
BsrI	ACTGG	2 cut(s)	592, 785
BssMI	GATC	5 cut(s)	85, 193, 230, 241, 838
Bst2UI	CCWGG	1 cut(s)	264
Bst4CI	ACNGT	1 cut(s)	420
BstDEI	CTNAG	2 cut(s)	226, 433
BstF5I	GGATG	1 cut(s)	409
BstKTI	GATC	5 cut(s)	88, 196, 233, 244, 841
BstMBI	GATC	5 cut(s)	85, 193, 230, 241, 838
BstMWI	GCNNNNNNNGC	4 cut(s)	314, 695, 749, 778
BstNI	CCWGG	1 cut(s)	264
BstNSI	RCATGY	1 cut(s)	223
BstSCI	CCNGG	1 cut(s)	262
BstSFI	CTRYAG	1 cut(s)	618
BstV1I	GCAGC	3 cut(s)	84, 781, 811
BstV2I	GAAGAC	1 cut(s)	280
BstX2I	RGATCY	1 cut(s)	230
BstYI	RGATCY	1 cut(s)	230
Bsu36I	CCTNAGG	1 cut(s)	226
BsuI	GTATCC	1 cut(s)	723
BsuRI	GGCC	3 cut(s)	448, 528, 784
BtsCI	GGATG	1 cut(s)	409
Cfr13I	GGNCC	2 cut(s)	446, 664
Csp6I	GTAC	3 cut(s)	217, 569, 882
CviAII	CATG	4 cut(s)	220, 251, 338, 642
CviQI	GTAC	3 cut(s)	217, 569, 882
DdeI	CTNAG	2 cut(s)	226, 433
DpnI	GATC	5 cut(s)	87, 195, 232, 243, 840
DpnII	GATC	5 cut(s)	85, 193, 230, 241, 838
EaeI	YGGCCR	1 cut(s)	782
Eco47I	GGWCC	1 cut(s)	664
Eco81I	CCTNAGG	1 cut(s)	226
EcoRII	CCWGG	1 cut(s)	262
FaeI	CATG	4 cut(s)	223, 254, 341, 645
FaqI	GGGAC	3 cut(s)	336, 470, 917
FatI	CATG	4 cut(s)	219, 250, 337, 641
FauI	CCCGC	2 cut(s)	724, 894
Fnu4HI	GCNGC	6 cut(s)	98, 306, 750, 770, 782, 825
FokI	GGATG	1 cut(s)	396
Fsp4HI	GCNGC	6 cut(s)	98, 306, 750, 770, 782, 825
FspBI	CTAG	3 cut(s)	326, 612, 891
GluI	GCNGC	6 cut(s)	98, 306, 750, 770, 782, 825
GsaI	CCCAGC	2 cut(s)	312, 698
GsuI	CTGGAG	1 cut(s)	492
HaeIII	GGCC	3 cut(s)	448, 528, 784
HapII	CCGG	1 cut(s)	667
Hin1II	CATG	4 cut(s)	223, 254, 341, 645
HinfI	GANTC	1 cut(s)	535
HpaII	CCGG	1 cut(s)	667
HphI	GGTGA	1 cut(s)	140
Hpy188I	TCNGA	2 cut(s)	424, 547
Hpy188III	TCNNGA	4 cut(s)	509, 612, 764, 842
HpyAV	CCTTC	1 cut(s)	395
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	468
HpyCH4V	TGCA	5 cut(s)	100, 317, 518, 641, 827
HpyF10VI	GCNNNNNNNGC	4 cut(s)	314, 695, 749, 778
HpyF3I	CTNAG	2 cut(s)	226, 433
HpySE526I	ACGT	1 cut(s)	468
Hsp92II	CATG	4 cut(s)	223, 254, 341, 645
Kzo9I	GATC	5 cut(s)	85, 193, 230, 241, 838
LmnI	GCTCC	5 cut(s)	207, 386, 511, 766, 869
Lsp1109I	GCAGC	3 cut(s)	84, 781, 811
MaeI	CTAG	3 cut(s)	326, 612, 891
MaeII	ACGT	1 cut(s)	468
MaeIII	GTNAC	2 cut(s)	699, 802
MalI	GATC	5 cut(s)	87, 195, 232, 243, 840
MboI	GATC	5 cut(s)	85, 193, 230, 241, 838
MboII	GAAGA	3 cut(s)	161, 285, 310
MfeI	CAATTG	2 cut(s)	530, 600
MflI	RGATCY	1 cut(s)	230
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	5 cut(s)	113, 530, 600, 607, 674
MlyI	GAGTC	1 cut(s)	529
MmeI	TCCRAC	1 cut(s)	408
MnlI	CCTC	5 cut(s)	7, 232, 363, 716, 864
MseI	TTAA	4 cut(s)	137, 165, 396, 540
MslI	CAYNNNNRTG	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	308
MspI	CCGG	1 cut(s)	667
MspR9I	CCNGG	1 cut(s)	264
MunI	CAATTG	2 cut(s)	530, 600
MvaI	CCWGG	1 cut(s)	264
MwoI	GCNNNNNNNGC	4 cut(s)	314, 695, 749, 778
NdeII	GATC	5 cut(s)	85, 193, 230, 241, 838
NlaIII	CATG	4 cut(s)	223, 254, 341, 645
NlaIV	GGNNCC	2 cut(s)	203, 490
NmuCI	GTSAC	1 cut(s)	802
NspI	RCATGY	1 cut(s)	223
PflMI	CCANNNNNTGG	1 cut(s)	739
PkrI	GCNGC	6 cut(s)	99, 307, 751, 771, 783, 826
PleI	GAGTC	1 cut(s)	529
PpsI	GAGTC	1 cut(s)	529
Psp6I	CCWGG	1 cut(s)	262
PspFI	CCCAGC	2 cut(s)	308, 694
PspGI	CCWGG	1 cut(s)	262
PspN4I	GGNNCC	2 cut(s)	203, 490
PspPI	GGNCC	2 cut(s)	446, 664
PsuI	RGATCY	1 cut(s)	230
RsaI	GTAC	3 cut(s)	218, 570, 883
RsaNI	GTAC	3 cut(s)	217, 569, 882
RseI	CAYNNNNRTG	1 cut(s)	249
SaqAI	TTAA	4 cut(s)	137, 165, 396, 540
SatI	GCNGC	6 cut(s)	98, 306, 750, 770, 782, 825
Sau3AI	GATC	5 cut(s)	85, 193, 230, 241, 838
Sau96I	GGNCC	2 cut(s)	446, 664
ScaI	AGTACT	1 cut(s)	570
SchI	GAGTC	1 cut(s)	529
ScrFI	CCNGG	1 cut(s)	264
SduI	GDGCHC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	618
SinI	GGWCC	1 cut(s)	664
SmiMI	CAYNNNNRTG	1 cut(s)	249
Sse9I	AATT	5 cut(s)	113, 530, 600, 607, 674
SsiI	CCGC	5 cut(s)	306, 717, 749, 781, 901
SspMI	CTAG	3 cut(s)	326, 612, 891
StyD4I	CCNGG	1 cut(s)	262
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	471
TaqI	TCGA	1 cut(s)	28
TasI	AATT	5 cut(s)	113, 530, 600, 607, 674
TatI	WGTACW	3 cut(s)	216, 568, 881
TauI	GCSGC	3 cut(s)	308, 752, 784
Tru1I	TTAA	4 cut(s)	137, 165, 396, 540
Tru9I	TTAA	4 cut(s)	137, 165, 396, 540
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	3 cut(s)	97, 769, 824
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	2 cut(s)	311, 414
Van91I	CCANNNNNTGG	1 cut(s)	739
VpaK11BI	GGWCC	1 cut(s)	664
XapI	RAATTY	2 cut(s)	113, 674
XbaI	TCTAGA	1 cut(s)	611
XceI	RCATGY	1 cut(s)	223
XspI	CTAG	3 cut(s)	326, 612, 891
ZrmI	AGTACT	1 cut(s)	570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.