Basic Information

Type: Sequence Only

Biological Identity

Species

rosa_samantha

Chromosome

Unknown

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Reverse (-)

0 .. 0

Gene Structure 1 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG287300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1137 bp

ATGAGTTGGTTCTTGTGTTCTGGAAAATCAAGCACAAATGCAAAGAAGAAGAAGAAGCAGAGTCATAAGCCAGCAGATCAGATCTCATCACTTTCAGATCAAGTGAAGGCAAATTCAGCATTAAAGGAAGGGTCTAAAAGTAGCGGCTCTGATCACATTGCAGCACATACATTTACATTTCGCGAATTGGCAGCTGCAACAAAGAATTTTAGAGCAGATTGTTTTGTGGGTGAAGGAGGTTTTGGTCAAGTATATAGAGGGCACCTGGAGAGTTCTAATCAGGAAGTGGCTATCAAGAAACTTGATTCTAATGGACTTCAAGGGAACAGAGAATTCCTTGTCGAAGTATTAATGCTAAGCCTACTTCACCACCCGAATCTTGTCAACTTAATAGGCTACTGTGCTGATGGGGATCAGAGGCTTTTGGTATACGAGTACATGCCATTGGGATCCTTAGAAGACCATTTACATGATCTACCACCAGATAAAAAACAACTCGACTGGAATACCCGAATGAAAATAGCTGCTGGTGCTGCCAAGGGCTTGGAGTATTTGCACGACAAAGCTAACCCTCCTGTTATTTATCGTGATCTTAAGTGCTCAAACATTCTACTTGATGAAGGTTACCATCCCAAGCTATCTGATTTTGGCTTGGCAAAGTTAGGTCCTGTAGGAGATAATACTCATGTTTCCACTAGGGTAATGGGAACCTATGGATATTGTGCCCCTGAGTATGCAATGACTGGTCAGCTCACATTGAAATCAGATGTATATAGCTTCGGGGTTGTTCTTTTGGAAATTATCACTGGAAGAAAGGCAATTGACAATTCAAGGGCTGCTGGGGAACACAATTTGGTTGCATGGGCCCGACCCTTATTTAGAGACCGTAGGAAATTTTCACAGATTGCTGATCCATTGCTCCAAGGACAATATCCGATGAGGGGAATGTATCAAGCTCTTGCGGTTGCTGCAATGTGTGTCCAAGAACAGCCTAATATGCGACCTGTCATAGCGGATGTAGTCACAGCCCTTAATTATCTTGCTTCCCAAAAGTATGACCCTCAAGTGCTTCGAGTCCAGAACTCTCGCACAGGCTTGTCAGCCTCGTCTACTCCTAGATCAAGAAGGGAATTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

378

Amino Acids

41.87

Weight (kDa)

9.03

Isoelectric Point (pI)

30.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	75 - 342	8.6e-48	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	75 - 339	2.4e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	2 cut(s)	429, 1109
AccII	CGCG	1 cut(s)	183
AciI	CCGC	3 cut(s)	144, 962, 1013
AclWI	GGATC	4 cut(s)	420, 444, 457, 905
AcsI	RAATTY	5 cut(s)	112, 205, 332, 893, 1130
AfaI	GTAC	1 cut(s)	437
AfiI	CCNNNNNNNGG	1 cut(s)	941
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	3 cut(s)	320, 760, 831
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AluBI	AGCT	7 cut(s)	194, 524, 566, 637, 751, 777, 956
AluI	AGCT	7 cut(s)	194, 524, 566, 637, 751, 777, 956
Alw21I	GWGCWC	1 cut(s)	602
Alw26I	GTCTC	1 cut(s)	876
AlwI	GGATC	4 cut(s)	420, 444, 457, 905
AoxI	GGCC	1 cut(s)	864
ApaI	GGGCCC	1 cut(s)	868
ApeKI	GCWGC	7 cut(s)	161, 191, 194, 524, 533, 836, 968
ApoI	RAATTY	5 cut(s)	112, 205, 332, 893, 1130
AseI	ATTAAT	1 cut(s)	350
AspS9I	GGNCC	3 cut(s)	665, 864, 865
AsuHPI	GGTGA	2 cut(s)	242, 359
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	3 cut(s)	264, 727, 868
BamHI	GGATCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	261
BanII	GRGCYC	1 cut(s)	868
BarI	GAAGNNNNNNTAC	2 cut(s)	450, 482
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	1 cut(s)	602
BbvI	GCAGC	7 cut(s)	173, 181, 203, 511, 520, 823, 955
BccI	CCATC	2 cut(s)	401, 636
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	1 cut(s)	876
BfaI	CTAG	2 cut(s)	696, 1116
BfmI	CTRYAG	1 cut(s)	669
BfrI	CTTAAG	1 cut(s)	593
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	8 cut(s)	145, 162, 192, 195, 525, 534, 837, 969
BlpI	GCTNAGC	1 cut(s)	356
BlsI	GCNGC	8 cut(s)	146, 163, 193, 196, 526, 535, 838, 970
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	3 cut(s)	665, 864, 865
BmiI	GGNNCC	4 cut(s)	263, 451, 709, 866
BmrFI	CCNGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	1 cut(s)	1047
BsaBI	GATNNNNATC	1 cut(s)	411
BsaI	GGTCTC	1 cut(s)	876
BsaJI	CCNNGG	2 cut(s)	537, 922
Bsc4I	CCNNNNNNNGG	1 cut(s)	941
Bse1I	ACTGG	3 cut(s)	506, 748, 811
Bse3DI	GCAATG	4 cut(s)	156, 744, 914, 978
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	537, 922
BseGI	GGATG	2 cut(s)	628, 1021
BseJI	GATNNNNATC	1 cut(s)	411
BseLI	CCNNNNNNNGG	1 cut(s)	941
BseMI	GCAATG	4 cut(s)	156, 744, 914, 978
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	3 cut(s)	506, 748, 811
BseSI	GKGCMC	3 cut(s)	264, 727, 868
BseXI	GCAGC	7 cut(s)	173, 181, 203, 511, 520, 823, 955
BseYI	CCCAGC	1 cut(s)	839
Bsh1236I	CGCG	1 cut(s)	183
BshFI	GGCC	1 cut(s)	866
BshNI	GGYRCC	1 cut(s)	261
BsiHKAI	GWGCWC	1 cut(s)	602
BslI	CCNNNNNNNGG	1 cut(s)	941
BsmAI	GTCTC	1 cut(s)	876
BsnI	GGCC	1 cut(s)	866
Bso31I	GGTCTC	1 cut(s)	876
Bsp120I	GGGCCC	1 cut(s)	864
Bsp1286I	GDGCHC	4 cut(s)	264, 602, 727, 868
Bsp1720I	GCTNAGC	1 cut(s)	356
Bsp68I	TCGCGA	1 cut(s)	183
BspACI	CCGC	3 cut(s)	144, 962, 1013
BspANI	GGCC	1 cut(s)	866
BspCNI	CTCAG	1 cut(s)	721
BspFNI	CGCG	1 cut(s)	183
BspLI	GGNNCC	4 cut(s)	263, 451, 709, 866
BspPI	GGATC	4 cut(s)	420, 444, 457, 905
BspT107I	GGYRCC	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	593
BspTNI	GGTCTC	1 cut(s)	876
BsrDI	GCAATG	4 cut(s)	156, 744, 914, 978
BsrI	ACTGG	3 cut(s)	506, 748, 811
BssECI	CCNNGG	2 cut(s)	537, 922
BssNAI	GTATAC	1 cut(s)	430
BssT1I	CCWWGG	2 cut(s)	537, 922
Bst1107I	GTATAC	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	401, 887
BstAFI	CTTAAG	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	3 cut(s)	356, 454, 729
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	2 cut(s)	628, 1021
BstFNI	CGCG	1 cut(s)	183
BstMAI	GTCTC	1 cut(s)	876
BstMWI	GCNNNNNNNGC	5 cut(s)	116, 530, 533, 968, 997
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	442
BstPI	GGTNACC	1 cut(s)	623
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	3 cut(s)	264, 727, 868
BstUI	CGCG	1 cut(s)	183
BstV1I	GCAGC	7 cut(s)	173, 181, 203, 511, 520, 823, 955
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	2 cut(s)	81, 449
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	2 cut(s)	81, 449
BstZ17I	GTATAC	1 cut(s)	430
BsuRI	GGCC	1 cut(s)	866
BtsCI	GGATG	2 cut(s)	628, 1021
BtsIMutI	CAGTG	1 cut(s)	804
BtuMI	TCGCGA	1 cut(s)	183
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	3 cut(s)	665, 864, 865
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	4 cut(s)	439, 470, 686, 861
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	3 cut(s)	356, 454, 729
Eco130I	CCWWGG	2 cut(s)	537, 922
Eco24I	GRGCYC	1 cut(s)	868
Eco31I	GGTCTC	1 cut(s)	876
Eco47I	GGWCC	1 cut(s)	665
Eco91I	GGTNACC	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	665
EcoO65I	GGTNACC	1 cut(s)	623
EcoRI	GAATTC	2 cut(s)	332, 1130
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	2 cut(s)	537, 922
EcoT38I	GRGCYC	1 cut(s)	868
ErhI	CCWWGG	2 cut(s)	537, 922
FaeI	CATG	4 cut(s)	442, 473, 689, 864
FatI	CATG	4 cut(s)	438, 469, 685, 860
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	2 cut(s)	429, 1109
Fnu4HI	GCNGC	8 cut(s)	145, 162, 192, 195, 525, 534, 837, 969
FokI	GGATG	2 cut(s)	615, 1028
FriOI	GRGCYC	1 cut(s)	868
Fsp4HI	GCNGC	8 cut(s)	145, 162, 192, 195, 525, 534, 837, 969
FspBI	CTAG	2 cut(s)	696, 1116
GluI	GCNGC	8 cut(s)	145, 162, 192, 195, 525, 534, 837, 969
GsaI	CCCAGC	1 cut(s)	843
GsuI	CTGGAG	1 cut(s)	287
HaeIII	GGCC	1 cut(s)	866
Hin1II	CATG	4 cut(s)	442, 473, 689, 864
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	4 cut(s)	61, 305, 376, 1074
HphI	GGTGA	2 cut(s)	242, 359
Hpy166II	GTNNAC	3 cut(s)	385, 430, 1110
Hpy188I	TCNGA	8 cut(s)	81, 97, 151, 417, 643, 766, 936, 1136
Hpy188III	TCNNGA	7 cut(s)	21, 182, 281, 295, 587, 1078, 1122
Hpy8I	GTNNAC	3 cut(s)	385, 430, 1110
HpyAV	CCTTC	5 cut(s)	100, 122, 227, 614, 1119
HpyCH4III	ACNGT	2 cut(s)	401, 887
HpyCH4V	TGCA	7 cut(s)	41, 161, 197, 556, 737, 860, 971
HpyF10VI	GCNNNNNNNGC	5 cut(s)	116, 530, 533, 968, 997
HpyF3I	CTNAG	3 cut(s)	356, 454, 729
Hsp92II	CATG	4 cut(s)	442, 473, 689, 864
Ksp22I	TGATCA	1 cut(s)	151
LmnI	GCTCC	1 cut(s)	924
Lsp1109I	GCAGC	7 cut(s)	173, 181, 203, 511, 520, 823, 955
MaeI	CTAG	2 cut(s)	696, 1116
MaeIII	GTNAC	2 cut(s)	623, 1021
MboII	GAAGA	5 cut(s)	58, 61, 64, 470, 822
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	2 cut(s)	81, 449
MhlI	GDGCHC	4 cut(s)	264, 602, 727, 868
MlyI	GAGTC	2 cut(s)	70, 1083
MnlI	CCTC	7 cut(s)	230, 251, 411, 582, 933, 1071, 1114
MseI	TTAA	5 cut(s)	122, 350, 389, 594, 1032
MslI	CAYNNNNRTG	1 cut(s)	468
MspA1I	CMGCKG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	593
MspR9I	CCNGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	819
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	183
MwoI	GCNNNNNNNGC	5 cut(s)	116, 530, 533, 968, 997
NlaIII	CATG	4 cut(s)	442, 473, 689, 864
NlaIV	GGNNCC	4 cut(s)	263, 451, 709, 866
NmuCI	GTSAC	1 cut(s)	1021
NruI	TCGCGA	1 cut(s)	183
NspI	RCATGY	1 cut(s)	442
PfeI	GAWTC	2 cut(s)	305, 376
PkrI	GCNGC	8 cut(s)	146, 163, 193, 196, 526, 535, 838, 970
PleI	GAGTC	2 cut(s)	69, 1082
PpsI	GAGTC	2 cut(s)	69, 1082
PpuMI	RGGWCCY	1 cut(s)	665
PshBI	ATTAAT	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	623
PspFI	CCCAGC	1 cut(s)	839
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	4 cut(s)	263, 451, 709, 866
PspOMI	GGGCCC	1 cut(s)	864
PspPI	GGNCC	3 cut(s)	665, 864, 865
PspPPI	RGGWCCY	1 cut(s)	665
PsuI	RGATCY	2 cut(s)	81, 449
PvuII	CAGCTG	1 cut(s)	194
RruI	TCGCGA	1 cut(s)	183
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	1 cut(s)	468
SaqAI	TTAA	5 cut(s)	122, 350, 389, 594, 1032
SatI	GCNGC	8 cut(s)	145, 162, 192, 195, 525, 534, 837, 969
Sau96I	GGNCC	3 cut(s)	665, 864, 865
SchI	GAGTC	2 cut(s)	70, 1083
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	4 cut(s)	264, 602, 727, 868
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	468
SmlI	CTYRAG	2 cut(s)	593, 1062
SmoI	CTYRAG	2 cut(s)	593, 1062
SsiI	CCGC	3 cut(s)	144, 962, 1013
SspMI	CTAG	2 cut(s)	696, 1116
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	2 cut(s)	537, 922
TaaI	ACNGT	2 cut(s)	401, 887
TaqI	TCGA	3 cut(s)	342, 498, 1072
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	305, 376
Tru1I	TTAA	5 cut(s)	122, 350, 389, 594, 1032
Tru9I	TTAA	5 cut(s)	122, 350, 389, 594, 1032
TscAI	CASTG	1 cut(s)	811
TseFI	GTSAC	1 cut(s)	1021
TseI	GCWGC	7 cut(s)	161, 191, 194, 524, 533, 836, 968
Tsp45I	GTSAC	1 cut(s)	1021
TspDTI	ATGAA	2 cut(s)	530, 633
TspRI	CASTG	1 cut(s)	811
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	665
VspI	ATTAAT	1 cut(s)	350
XapI	RAATTY	5 cut(s)	112, 205, 332, 893, 1130
XceI	RCATGY	1 cut(s)	442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XmiI	GTMKAC	2 cut(s)	429, 1109
XspI	CTAG	2 cut(s)	696, 1116

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.