Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Forward (+)

14549975 .. 14552612

Gene Structure 2638 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g14360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGAGTTGGTTCCTGTGTTCTGGCAAATTAAGCAGAAAAGCTGCAAAGAAGAAGAAGCTCAAGAATAACAAGCCACAAGATCAGATCTCATCGATTTCAGAACAACTGAAGGCAAATTTGGGACCATCTGTAAAGGAGGCTCCTAAGGATGGAGGCCCCGGTCACATTGCAGCACATACATTTACATTTCGAGAATTGGCAGCAGCAACAAAGAACTTTCGAGCAGATTGTATTTTAGGTGAAGGAGGTTTTGGTCAAGTATATAAAGGGCGCTTGGAGAGCACTAATCAGGTAGTGGCCATAAAGCAACTTGATTCCAATGGGCTTCAAGGGAACAGGGAATTCCTTGTCGAAGTATTAATGTTGAGCCTACTTCACCATCCCAATCTTGTGAACTTAGTAGGCTATTGTGCTGACGGTGATCAGAGGCTTTTGGTATACGAGTACATGCCATTGGGATCTTTGGAAGACCATCTGCACGATCTACCGCCAGACGGAAAACATCTTGACTGGAACACAAGAATGAAAATAGCTGCCGGTGCTGCAAAGGGCTTGGAGTATTTGCACGACAAAGCTAGCCCCCCTGTTATTTATCGTGATCTTAAATGCTCAAACATTTTACTTGGTGAAGGATACCATCCTAAGCTATCGGATTTTGGCTTGGCAAAGTTGGGTCCTGTGGGAGATAATACTCATGTTTCCACTAGGGTGATGGGAACCTATGGATATTGTGCCCCTGAATATGCAATGACTGGTCAGCTCACATTGAAATCAGATGTATACAGCTTCGGGGTTGTTCTTCTGGAAATCATTACCGGAAGAAAGGCAATTGACATTTCCAGGGCTGCCGGTGAACAGAATTTGGTCACATGGGCCCGTCCCTTGTTTAGAGATCGATGGAAATTTTGGCAAATTGCTGATCCAATGCTCCAAGGTCAGTATCCGGTGAGGGGAATGTATCAAGCTCTTGCCGTGGCTGCAATGTGTGTCCAGGATCACCCTAATATGCGACCTGCCATAGCGGATGCAGTGACAGCCCTTAATTACCTTGCTTCCCAAAAATATCGATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

358

Amino Acids

39.45

Weight (kDa)

9.03

Isoelectric Point (pI)

26.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	77 - 276	2.6e-46	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	78 - 343	1.3e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1021
AccI	GTMKAC	2 cut(s)	438, 780
AciI	CCGC	2 cut(s)	488, 1022
AclWI	GGATC	4 cut(s)	466, 914, 1002, 1062
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	4 cut(s)	115, 341, 859, 902
AcuI	CTGAAG	1 cut(s)	128
AfaI	GTAC	1 cut(s)	446
AfiI	CCNNNNNNNGG	3 cut(s)	149, 494, 950
AgsI	TTSAA	2 cut(s)	329, 769
AjnI	CCWGG	2 cut(s)	839, 990
AjuI	GAANNNNNNNTTGG	4 cut(s)	101, 133, 234, 266
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	8 cut(s)	41, 58, 533, 575, 646, 760, 786, 965
AluI	AGCT	8 cut(s)	41, 58, 533, 575, 646, 760, 786, 965
Alw21I	GWGCWC	1 cut(s)	284
AlwI	GGATC	4 cut(s)	466, 914, 1002, 1062
AoxI	GGCC	3 cut(s)	154, 297, 873
ApaI	GGGCCC	1 cut(s)	877
ApeKI	GCWGC	8 cut(s)	41, 170, 200, 203, 533, 542, 845, 977
ApoI	RAATTY	4 cut(s)	115, 341, 859, 902
AseI	ATTAAT	1 cut(s)	359
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	5 cut(s)	122, 155, 674, 873, 874
AsuC2I	CCSGG	1 cut(s)	159
AsuHPI	GGTGA	8 cut(s)	251, 368, 431, 638, 721, 863, 958, 989
AsuNHI	GCTAGC	1 cut(s)	575
AvaII	GGWCC	2 cut(s)	122, 674
AxyI	CCTNAGG	1 cut(s)	144
BaeGI	GKGCMC	2 cut(s)	736, 877
BalI	TGGCCA	1 cut(s)	299
BanII	GRGCYC	1 cut(s)	877
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	8 cut(s)	28, 182, 212, 215, 520, 529, 832, 964
BccI	CCATC	7 cut(s)	133, 143, 387, 480, 645, 706, 891
BceAI	ACGGC	1 cut(s)	956
BciT130I	CCWGG	2 cut(s)	841, 992
BciVI	GTATCC	2 cut(s)	626, 951
BclI	TGATCA	1 cut(s)	421
BcnI	CCSGG	1 cut(s)	159
BfaI	CTAG	2 cut(s)	576, 705
BfoI	RGCGCY	1 cut(s)	274
BfuAI	ACCTGC	1 cut(s)	1021
BfuI	GTATCC	2 cut(s)	626, 951
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	8 cut(s)	42, 171, 201, 204, 534, 543, 846, 978
BlsI	GCNGC	8 cut(s)	43, 172, 202, 205, 535, 544, 847, 979
Bme1390I	CCNGG	3 cut(s)	159, 841, 992
Bme18I	GGWCC	2 cut(s)	122, 674
BmgT120I	GGNCC	5 cut(s)	122, 155, 674, 873, 874
BmiI	GGNNCC	7 cut(s)	11, 123, 141, 157, 675, 718, 875
BmrFI	CCNGG	3 cut(s)	159, 841, 992
BmsI	GCATC	1 cut(s)	1015
BmtI	GCTAGC	1 cut(s)	579
BpiI	GAAGAC	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	642
BpuEI	CTTGAG	1 cut(s)	44
BpuMI	CCSGG	1 cut(s)	159
Bsa29I	ATCGAT	3 cut(s)	92, 895, 1066
BsaJI	CCNNGG	4 cut(s)	157, 840, 931, 972
BsaWI	WCCGGW	2 cut(s)	815, 943
Bsc4I	CCNNNNNNNGG	3 cut(s)	149, 494, 950
Bse118I	RCCGGY	2 cut(s)	536, 848
Bse1I	ACTGG	2 cut(s)	515, 757
Bse21I	CCTNAGG	1 cut(s)	144
Bse3DI	GCAATG	3 cut(s)	165, 753, 987
BseBI	CCWGG	2 cut(s)	841, 992
BseCI	ATCGAT	3 cut(s)	92, 895, 1066
BseDI	CCNNGG	4 cut(s)	157, 840, 931, 972
BseGI	GGATG	4 cut(s)	154, 379, 637, 1030
BseLI	CCNNNNNNNGG	3 cut(s)	149, 494, 950
BseMI	GCAATG	3 cut(s)	165, 753, 987
BseNI	ACTGG	2 cut(s)	515, 757
BseSI	GKGCMC	2 cut(s)	736, 877
BseXI	GCAGC	8 cut(s)	28, 182, 212, 215, 520, 529, 832, 964
BsgI	GTGCAG	1 cut(s)	461
BshFI	GGCC	3 cut(s)	156, 299, 875
BshVI	ATCGAT	3 cut(s)	92, 895, 1066
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	5 cut(s)	159, 537, 816, 849, 944
BslFI	GGGAC	2 cut(s)	135, 864
BslI	CCNNNNNNNGG	3 cut(s)	149, 494, 950
BsmFI	GGGAC	2 cut(s)	135, 864
BsnI	GGCC	3 cut(s)	156, 299, 875
Bsp120I	GGGCCC	1 cut(s)	873
Bsp1286I	GDGCHC	3 cut(s)	284, 736, 877
BspACI	CCGC	2 cut(s)	488, 1022
BspANI	GGCC	3 cut(s)	156, 299, 875
BspDI	ATCGAT	3 cut(s)	92, 895, 1066
BspLI	GGNNCC	7 cut(s)	11, 123, 141, 157, 675, 718, 875
BspMI	ACCTGC	1 cut(s)	1021
BspOI	GCTAGC	1 cut(s)	579
BspPI	GGATC	4 cut(s)	466, 914, 1002, 1062
BsrDI	GCAATG	3 cut(s)	165, 753, 987
BsrFI	RCCGGY	2 cut(s)	536, 848
BsrI	ACTGG	2 cut(s)	515, 757
BssAI	RCCGGY	2 cut(s)	536, 848
BssECI	CCNNGG	4 cut(s)	157, 840, 931, 972
BssNAI	GTATAC	2 cut(s)	439, 781
BssT1I	CCWWGG	1 cut(s)	931
Bst1107I	GTATAC	2 cut(s)	439, 781
Bst2UI	CCWGG	2 cut(s)	841, 992
Bst4CI	ACNGT	1 cut(s)	419
BstC8I	GCNNGC	1 cut(s)	577
BstDEI	CTNAG	3 cut(s)	144, 397, 642
BstDSI	CCRYGG	1 cut(s)	972
BstF5I	GGATG	4 cut(s)	154, 379, 637, 1030
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	6 cut(s)	30, 279, 539, 542, 977, 1034
BstNI	CCWGG	2 cut(s)	841, 992
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	3 cut(s)	157, 839, 990
BstSLI	GKGCMC	2 cut(s)	736, 877
BstV1I	GCAGC	8 cut(s)	28, 182, 212, 215, 520, 529, 832, 964
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	2 cut(s)	84, 458
BstYI	RGATCY	2 cut(s)	84, 458
BstZ17I	GTATAC	2 cut(s)	439, 781
Bsu15I	ATCGAT	3 cut(s)	92, 895, 1066
Bsu36I	CCTNAGG	1 cut(s)	144
BsuI	GTATCC	2 cut(s)	626, 951
BsuRI	GGCC	3 cut(s)	156, 299, 875
BsuTUI	ATCGAT	3 cut(s)	92, 895, 1066
BtgI	CCRYGG	1 cut(s)	972
BtsCI	GGATG	4 cut(s)	154, 379, 637, 1030
BtsI	GCAGTG	1 cut(s)	1035
BtsIMutI	CAGTG	1 cut(s)	1035
BveI	ACCTGC	1 cut(s)	1021
Cac8I	GCNNGC	1 cut(s)	577
CfoI	GCGC	1 cut(s)	273
Cfr10I	RCCGGY	2 cut(s)	536, 848
Cfr13I	GGNCC	5 cut(s)	122, 155, 674, 873, 874
ClaI	ATCGAT	3 cut(s)	92, 895, 1066
Csp6I	GTAC	1 cut(s)	445
CviAII	CATG	3 cut(s)	448, 695, 870
CviQI	GTAC	1 cut(s)	445
DdeI	CTNAG	3 cut(s)	144, 397, 642
EaeI	YGGCCR	1 cut(s)	297
Eco130I	CCWWGG	1 cut(s)	931
Eco24I	GRGCYC	1 cut(s)	877
Eco47I	GGWCC	2 cut(s)	122, 674
Eco57I	CTGAAG	1 cut(s)	128
Eco81I	CCTNAGG	1 cut(s)	144
EcoO109I	RGGNCCY	2 cut(s)	155, 674
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	839, 990
EcoT14I	CCWWGG	1 cut(s)	931
EcoT38I	GRGCYC	1 cut(s)	877
ErhI	CCWWGG	1 cut(s)	931
FaeI	CATG	3 cut(s)	451, 698, 873
FaqI	GGGAC	2 cut(s)	135, 864
FatI	CATG	3 cut(s)	447, 694, 869
FbaI	TGATCA	1 cut(s)	421
FblI	GTMKAC	2 cut(s)	438, 780
Fnu4HI	GCNGC	8 cut(s)	42, 171, 201, 204, 534, 543, 846, 978
FokI	GGATG	4 cut(s)	161, 366, 624, 1037
FriOI	GRGCYC	1 cut(s)	877
Fsp4HI	GCNGC	8 cut(s)	42, 171, 201, 204, 534, 543, 846, 978
FspBI	CTAG	2 cut(s)	576, 705
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	8 cut(s)	42, 171, 201, 204, 534, 543, 846, 978
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	3 cut(s)	156, 299, 875
HapII	CCGG	5 cut(s)	159, 537, 816, 849, 944
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	451, 698, 873
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	1 cut(s)	314
HpaII	CCGG	5 cut(s)	159, 537, 816, 849, 944
HphI	GGTGA	8 cut(s)	251, 368, 431, 638, 721, 863, 958, 989
Hpy166II	GTNNAC	4 cut(s)	394, 439, 781, 854
Hpy188I	TCNGA	5 cut(s)	84, 100, 426, 652, 775
Hpy188III	TCNNGA	6 cut(s)	61, 191, 506, 596, 803, 1071
Hpy8I	GTNNAC	4 cut(s)	394, 439, 781, 854
HpyAV	CCTTC	3 cut(s)	103, 236, 623
HpyCH4III	ACNGT	1 cut(s)	419
HpyCH4V	TGCA	8 cut(s)	44, 170, 478, 545, 565, 746, 980, 1028
HpyF10VI	GCNNNNNNNGC	6 cut(s)	30, 279, 539, 542, 977, 1034
HpyF3I	CTNAG	3 cut(s)	144, 397, 642
Hsp92II	CATG	3 cut(s)	451, 698, 873
HspAI	GCGC	1 cut(s)	271
Ksp22I	TGATCA	1 cut(s)	421
LmnI	GCTCC	2 cut(s)	145, 933
Lsp1109I	GCAGC	8 cut(s)	28, 182, 212, 215, 520, 529, 832, 964
LweI	GCATC	1 cut(s)	1015
MaeI	CTAG	2 cut(s)	576, 705
MaeIII	GTNAC	3 cut(s)	161, 865, 1030
MboII	GAAGA	5 cut(s)	61, 64, 479, 791, 831
MfeI	CAATTG	1 cut(s)	828
MflI	RGATCY	2 cut(s)	84, 458
MhlI	GDGCHC	3 cut(s)	284, 736, 877
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	9 cut(s)	26, 115, 194, 341, 828, 859, 902, 912, 1042
MluNI	TGGCCA	1 cut(s)	299
MnlI	CCTC	5 cut(s)	130, 146, 239, 420, 942
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	4 cut(s)	29, 359, 603, 1041
MslI	CAYNNNNRTG	2 cut(s)	521, 707
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	5 cut(s)	159, 537, 816, 849, 944
MspR9I	CCNGG	3 cut(s)	159, 841, 992
MunI	CAATTG	1 cut(s)	828
MvaI	CCWGG	2 cut(s)	841, 992
MwoI	GCNNNNNNNGC	6 cut(s)	30, 279, 539, 542, 977, 1034
NciI	CCSGG	1 cut(s)	159
NheI	GCTAGC	1 cut(s)	575
NlaIII	CATG	3 cut(s)	451, 698, 873
NlaIV	GGNNCC	7 cut(s)	11, 123, 141, 157, 675, 718, 875
NmuCI	GTSAC	3 cut(s)	161, 865, 1030
NspI	RCATGY	1 cut(s)	451
OliI	CACNNNNGTG	1 cut(s)	707
PfeI	GAWTC	1 cut(s)	314
PfoI	TCCNGGA	1 cut(s)	990
PkrI	GCNGC	8 cut(s)	43, 172, 202, 205, 535, 544, 847, 979
PpuMI	RGGWCCY	1 cut(s)	674
PshBI	ATTAAT	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	674
Psp6I	CCWGG	2 cut(s)	839, 990
PspGI	CCWGG	2 cut(s)	839, 990
PspN4I	GGNNCC	7 cut(s)	11, 123, 141, 157, 675, 718, 875
PspOMI	GGGCCC	1 cut(s)	873
PspPI	GGNCC	5 cut(s)	122, 155, 674, 873, 874
PspPPI	RGGWCCY	1 cut(s)	674
PsuI	RGATCY	2 cut(s)	84, 458
RsaI	GTAC	1 cut(s)	446
RsaNI	GTAC	1 cut(s)	445
RseI	CAYNNNNRTG	2 cut(s)	521, 707
SaqAI	TTAA	4 cut(s)	29, 359, 603, 1041
SatI	GCNGC	8 cut(s)	42, 171, 201, 204, 534, 543, 846, 978
Sau96I	GGNCC	5 cut(s)	122, 155, 674, 873, 874
ScrFI	CCNGG	3 cut(s)	159, 841, 992
SduI	GDGCHC	3 cut(s)	284, 736, 877
SfaNI	GCATC	1 cut(s)	1015
SinI	GGWCC	2 cut(s)	122, 674
SmiMI	CAYNNNNRTG	2 cut(s)	521, 707
SmlI	CTYRAG	1 cut(s)	59
SmoI	CTYRAG	1 cut(s)	59
Sse9I	AATT	9 cut(s)	26, 115, 194, 341, 828, 859, 902, 912, 1042
SsiI	CCGC	2 cut(s)	488, 1022
SspMI	CTAG	2 cut(s)	576, 705
StyD4I	CCNGG	3 cut(s)	157, 839, 990
StyI	CCWWGG	1 cut(s)	931
TaaI	ACNGT	1 cut(s)	419
TaqI	TCGA	6 cut(s)	92, 190, 220, 351, 895, 1066
TasI	AATT	9 cut(s)	26, 115, 194, 341, 828, 859, 902, 912, 1042
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	1 cut(s)	314
Tru1I	TTAA	4 cut(s)	29, 359, 603, 1041
Tru9I	TTAA	4 cut(s)	29, 359, 603, 1041
TscAI	CASTG	1 cut(s)	1035
TseFI	GTSAC	3 cut(s)	161, 865, 1030
TseI	GCWGC	8 cut(s)	41, 170, 200, 203, 533, 542, 845, 977
Tsp45I	GTSAC	3 cut(s)	161, 865, 1030
TspDTI	ATGAA	1 cut(s)	539
TspGWI	ACGGA	1 cut(s)	510
TspRI	CASTG	1 cut(s)	1035
VpaK11BI	GGWCC	2 cut(s)	122, 674
VspI	ATTAAT	1 cut(s)	359
XapI	RAATTY	4 cut(s)	115, 341, 859, 902
XceI	RCATGY	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XmiI	GTMKAC	2 cut(s)	438, 780
XspI	CTAG	2 cut(s)	576, 705

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.