Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Forward (+)

13040913 .. 13041740

Gene Structure 828 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g10250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 639 bp

ATGAAAATAGCCGCTGGGGCAGCGAAGGGATTGGAGTATCTACATGACAAAGCAAGTCCTCCTGTTATATACAGAGATTTGAAATGCTCCAACATATTGCTTGGTGAAGGGTATCATCCAAAGCTGTCTGATTTTGGTTTAGCCAAACTTGGGCCTGTTGGGGATAACACCCATGTATCTACAAGGGTAATGGGAACGTATGGATATTGTGCTCCAGAGTATGCAATGACAGGGCAATTGACTCTTAAATCAGACGTTTATAGCTTTGGCGTAGTTCTTTTGGAAATTATAACAGGCAGGACAGCGATTGACAATACCAGAGGTGCAGGAGAACAGAATTTGGTTGCGTGGGCAAGACCCTTGTTTAATGACCGAAAGAAACTTTCACAAATGGCAGACCCAACGCTCCAGGGTCAGTATCCCCAAAGGGGCTTGTACCAAGCTCTTGCAGTTGCAGCAATGTGTGTTCAGGAGCAGCCTAATAAGCGGCCAGTTATAGCTGATGTCGTCACAGCTTTGACTTACCTTGCTTCACAGAAGTATGACCATGAAACAGAGCCAGTCCAAAGCTCCCGTCTTGCCCCTTGTACTCCCCCTAGAACCAAGAGGGATAGTGAAAGGAAGGCTCAATTGCGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

213

Amino Acids

23.28

Weight (kDa)

9.11

Isoelectric Point (pI)

37.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	2 - 172	4.1e-23	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	3 - 170	1e-24	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	290
AciI	CCGC	3 cut(s)	12, 487, 634
AcoI	YGGCCR	1 cut(s)	488
AcsI	RAATTY	1 cut(s)	337
AfaI	GTAC	2 cut(s)	437, 589
AfiI	CCNNNNNNNGG	2 cut(s)	150, 428
AgsI	TTSAA	1 cut(s)	82
AjnI	CCWGG	1 cut(s)	408
AluBI	AGCT	6 cut(s)	124, 264, 443, 500, 515, 570
AluI	AGCT	6 cut(s)	124, 264, 443, 500, 515, 570
Alw21I	GWGCWC	1 cut(s)	214
AoxI	GGCC	2 cut(s)	152, 488
ApeKI	GCWGC	3 cut(s)	20, 455, 475
ApoI	RAATTY	1 cut(s)	337
ArsI	GACNNNNNNTTYG	2 cut(s)	559, 591
AspS9I	GGNCC	1 cut(s)	152
AsuHPI	GGTGA	1 cut(s)	116
BaeI	ACNNNNGTAYC	2 cut(s)	159, 192
Bbv12I	GWGCWC	1 cut(s)	214
BbvI	GCAGC	3 cut(s)	32, 467, 487
BciT130I	CCWGG	1 cut(s)	410
BciVI	GTATCC	1 cut(s)	429
BfaI	CTAG	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	429
BglI	GCCNNNNNGGC	1 cut(s)	17
BisI	GCNGC	5 cut(s)	12, 21, 456, 476, 488
BlsI	GCNGC	5 cut(s)	13, 22, 457, 477, 489
Bme1390I	CCNGG	1 cut(s)	410
BmgT120I	GGNCC	1 cut(s)	152
BmrFI	CCNGG	1 cut(s)	410
BpmI	CTGGAG	2 cut(s)	198, 392
BsaJI	CCNNGG	1 cut(s)	409
Bsc4I	CCNNNNNNNGG	2 cut(s)	150, 428
Bse1I	ACTGG	2 cut(s)	491, 560
Bse3DI	GCAATG	2 cut(s)	231, 465
BseBI	CCWGG	1 cut(s)	410
BseDI	CCNNGG	1 cut(s)	409
BseGI	GGATG	1 cut(s)	115
BseLI	CCNNNNNNNGG	2 cut(s)	150, 428
BseMI	GCAATG	2 cut(s)	231, 465
BseNI	ACTGG	2 cut(s)	491, 560
BseXI	GCAGC	3 cut(s)	32, 467, 487
BseYI	CCCAGC	1 cut(s)	14
BsgI	GTGCAG	1 cut(s)	345
BshFI	GGCC	2 cut(s)	154, 490
BsiHKAI	GWGCWC	1 cut(s)	214
BslI	CCNNNNNNNGG	2 cut(s)	150, 428
BsnI	GGCC	2 cut(s)	154, 490
Bsp1286I	GDGCHC	1 cut(s)	214
BspACI	CCGC	3 cut(s)	12, 487, 634
BspANI	GGCC	2 cut(s)	154, 490
BsrDI	GCAATG	2 cut(s)	231, 465
BsrI	ACTGG	2 cut(s)	491, 560
BssECI	CCNNGG	1 cut(s)	409
Bst2UI	CCWGG	1 cut(s)	410
BstF5I	GGATG	1 cut(s)	115
BstMWI	GCNNNNNNNGC	4 cut(s)	17, 20, 455, 484
BstNI	CCWGG	1 cut(s)	410
BstSCI	CCNGG	1 cut(s)	408
BstV1I	GCAGC	3 cut(s)	32, 467, 487
BsuI	GTATCC	1 cut(s)	429
BsuRI	GGCC	2 cut(s)	154, 490
BtsCI	GGATG	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	152
Csp6I	GTAC	2 cut(s)	436, 588
CviAII	CATG	3 cut(s)	44, 173, 548
CviQI	GTAC	2 cut(s)	436, 588
EaeI	YGGCCR	1 cut(s)	488
EcoRII	CCWGG	1 cut(s)	408
FaeI	CATG	3 cut(s)	47, 176, 551
FatI	CATG	3 cut(s)	43, 172, 547
Fnu4HI	GCNGC	5 cut(s)	12, 21, 456, 476, 488
FokI	GGATG	1 cut(s)	102
Fsp4HI	GCNGC	5 cut(s)	12, 21, 456, 476, 488
FspBI	CTAG	1 cut(s)	597
GluI	GCNGC	5 cut(s)	12, 21, 456, 476, 488
GsaI	CCCAGC	1 cut(s)	18
GsuI	CTGGAG	2 cut(s)	198, 392
HaeIII	GGCC	2 cut(s)	154, 490
Hin1II	CATG	3 cut(s)	47, 176, 551
HinfI	GANTC	1 cut(s)	241
HphI	GGTGA	1 cut(s)	116
Hpy188I	TCNGA	2 cut(s)	130, 253
Hpy188III	TCNNGA	2 cut(s)	215, 470
HpyAV	CCTTC	3 cut(s)	19, 101, 616
HpyCH4IV	ACGT	2 cut(s)	197, 255
HpyCH4V	TGCA	4 cut(s)	224, 326, 449, 455
HpyF10VI	GCNNNNNNNGC	4 cut(s)	17, 20, 455, 484
HpySE526I	ACGT	2 cut(s)	197, 255
Hsp92II	CATG	3 cut(s)	47, 176, 551
LmnI	GCTCC	5 cut(s)	92, 217, 411, 472, 575
Lsp1109I	GCAGC	3 cut(s)	32, 467, 487
MaeI	CTAG	1 cut(s)	597
MaeII	ACGT	2 cut(s)	197, 255
MaeIII	GTNAC	1 cut(s)	508
MfeI	CAATTG	2 cut(s)	236, 629
MhlI	GDGCHC	1 cut(s)	214
MluCI	AATT	4 cut(s)	236, 285, 337, 629
MlyI	GAGTC	1 cut(s)	235
MmeI	TCCRAC	1 cut(s)	114
MnlI	CCTC	3 cut(s)	69, 314, 600
MseI	TTAA	2 cut(s)	246, 366
MspA1I	CMGCKG	1 cut(s)	14
MspR9I	CCNGG	1 cut(s)	410
MunI	CAATTG	2 cut(s)	236, 629
MvaI	CCWGG	1 cut(s)	410
MwoI	GCNNNNNNNGC	4 cut(s)	17, 20, 455, 484
NlaIII	CATG	3 cut(s)	47, 176, 551
NmuCI	GTSAC	1 cut(s)	508
PkrI	GCNGC	5 cut(s)	13, 22, 457, 477, 489
PleI	GAGTC	1 cut(s)	235
PpsI	GAGTC	1 cut(s)	235
PsiI	TTATAA	1 cut(s)	290
Psp6I	CCWGG	1 cut(s)	408
PspFI	CCCAGC	1 cut(s)	14
PspGI	CCWGG	1 cut(s)	408
PspPI	GGNCC	1 cut(s)	152
RsaI	GTAC	2 cut(s)	437, 589
RsaNI	GTAC	2 cut(s)	436, 588
SaqAI	TTAA	2 cut(s)	246, 366
SatI	GCNGC	5 cut(s)	12, 21, 456, 476, 488
Sau96I	GGNCC	1 cut(s)	152
SchI	GAGTC	1 cut(s)	235
ScrFI	CCNGG	1 cut(s)	410
SduI	GDGCHC	1 cut(s)	214
Sse9I	AATT	4 cut(s)	236, 285, 337, 629
SsiI	CCGC	3 cut(s)	12, 487, 634
SspMI	CTAG	1 cut(s)	597
StyD4I	CCNGG	1 cut(s)	408
TaiI	ACGT	2 cut(s)	200, 258
TaqII	GACCGA	1 cut(s)	387
TasI	AATT	4 cut(s)	236, 285, 337, 629
TatI	WGTACW	1 cut(s)	587
TauI	GCSGC	2 cut(s)	14, 490
Tru1I	TTAA	2 cut(s)	246, 366
Tru9I	TTAA	2 cut(s)	246, 366
TseFI	GTSAC	1 cut(s)	508
TseI	GCWGC	3 cut(s)	20, 455, 475
Tsp45I	GTSAC	1 cut(s)	508
TspDTI	ATGAA	2 cut(s)	17, 564
XapI	RAATTY	1 cut(s)	337
XspI	CTAG	1 cut(s)	597

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.