Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Reverse (-)

14210726 .. 14214178

Gene Structure 3453 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG164000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGCTCTTCCTGTTCCAAAGATTCTTACTTTTGTGTCCATTTCTGATTTTAGAATTATTAAACACAAACTCCTCTTTGAGTGTCAAAGGGTCTTCGAAAGATGGGGAACACATAGCAGCACAGACTTTTGTGTTCCGTGATTTGGCAATTGCAACTAGAAATTTCAGAGCAGAATGTCTTTTGGGGGAGGGTGGCTTTGGTCGAGTATATAAAGGACATTTGGAAAGTATAAATCAGGTAGTAGCTATCAAACAACTTGATCGTAATGGGTTGCAAGGGAACAGGGAATTTCTTGTTGAAGTGTTGATGTTAAGTCTGCTTCACCACCCTAACCTTGTTAATCTTCTCGGATATTGTGCTGATGGAGATCAAAGGCTCCTTGTTTATGAGTACATGCCCTTAGGATCTTTGGAGGATCATTTACATGATATGTCGCCTGGTAAGAGAAGACTTGATTGGAATACAAGAATGAAGATAGCTGCTGGGTCTGCAAAGGGACTAGAGTATTTACATGACAAAGCAAGTCCTCCTGTGATATACAGAGATTTGAAATGCTCCAACATATTGCTTAATGAAGGGTATCATCCCAAACTGTCTGATTTTGGCTTAGCCAAACTTGGGCCTGTTGGGGACAACACCCACGTTTCTACAAGGGTTATGGGAACCTACGGATATTGTGCTCCAGAGTATGCAATGACAGGCCAATTGACTCTTAAATCAGATGTTTATAGCTTTGGGGTAGTACTTTTGGAAATCATTACTGGCAGAAAGGCAATTGACAATTCTAGAGCTACAGGAGAGCAGAACTTGGTTGCATGGGCAAGACCTTTGTTCAAGGACCGGAAAAAATTTTCACAAATGGCAGACCCAGCGTTACAAGGTCAGTATCCCGCAAGAGGATTATACCAGGCTCTGGCTGTTGCGGCAATGTGTGTTCAGGAGCAGCCTAATATGCGGCCGGTTATAGCTGATGTTGTCACAGCTTTGACATACCTTGCTGCACAAAAGTATGATCCTGAAACACAGCCTCCCCAAAGCTCCCGTCTTGCCCCTTGTACTCCCCCTAGAACCAAGCGGGACAGCGAAAGGAAAGCTCAATGGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

368

Amino Acids

41.15

Weight (kDa)

8.83

Isoelectric Point (pI)

36.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	59 - 328	2.6e-47	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	59 - 325	1.7e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	913
AciI	CCGC	4 cut(s)	891, 923, 955, 1075
AclWI	GGATC	3 cut(s)	412, 423, 1007
AcoI	YGGCCR	1 cut(s)	956
AcsI	RAATTY	3 cut(s)	160, 287, 848
AfaI	GTAC	3 cut(s)	392, 744, 1057
AfiI	CCNNNNNNNGG	4 cut(s)	142, 618, 896, 913
AgsI	TTSAA	3 cut(s)	299, 550, 835
AjnI	CCWGG	2 cut(s)	436, 906
AjuI	GAANNNNNNNTTGG	2 cut(s)	439, 471
AluBI	AGCT	8 cut(s)	245, 479, 732, 791, 968, 983, 1038, 1094
AluI	AGCT	8 cut(s)	245, 479, 732, 791, 968, 983, 1038, 1094
Alw21I	GWGCWC	1 cut(s)	682
AlwI	GGATC	3 cut(s)	412, 423, 1007
AlwNI	CAGNNNCTG	1 cut(s)	913
AoxI	GGCC	3 cut(s)	620, 700, 956
ApeKI	GCWGC	4 cut(s)	116, 479, 943, 998
ApoI	RAATTY	3 cut(s)	160, 287, 848
ArsI	GACNNNNNNTTYG	2 cut(s)	1027, 1059
AspS9I	GGNCC	2 cut(s)	620, 838
AsuHPI	GGTGA	1 cut(s)	314
AsuII	TTCGAA	1 cut(s)	95
AvaII	GGWCC	1 cut(s)	838
AxyI	CCTNAGG	1 cut(s)	400
BbsI	GAAGAC	2 cut(s)	84, 454
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	4 cut(s)	128, 466, 955, 985
BccI	CCATC	2 cut(s)	95, 356
BciT130I	CCWGG	2 cut(s)	438, 908
BciVI	GTATCC	1 cut(s)	897
BfaI	CTAG	4 cut(s)	156, 500, 786, 1065
BfmI	CTRYAG	1 cut(s)	792
BfuI	GTATCC	1 cut(s)	897
BisI	GCNGC	6 cut(s)	117, 480, 924, 944, 956, 999
BlpI	GCTNAGC	1 cut(s)	607
BlsI	GCNGC	6 cut(s)	118, 481, 925, 945, 957, 1000
BmcAI	AGTACT	1 cut(s)	744
Bme1390I	CCNGG	2 cut(s)	438, 908
Bme18I	GGWCC	1 cut(s)	838
BmgT120I	GGNCC	2 cut(s)	620, 838
BmiI	GGNNCC	2 cut(s)	377, 664
BmrFI	CCNGG	2 cut(s)	438, 908
BpiI	GAAGAC	2 cut(s)	84, 454
BpmI	CTGGAG	1 cut(s)	666
Bpu1102I	GCTNAGC	1 cut(s)	607
Bpu14I	TTCGAA	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	366
BsaWI	WCCGGW	1 cut(s)	840
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 83, 1012, 1042
Bsc4I	CCNNNNNNNGG	4 cut(s)	142, 618, 896, 913
Bse118I	RCCGGY	1 cut(s)	958
Bse1I	ACTGG	1 cut(s)	766
Bse21I	CCTNAGG	1 cut(s)	400
Bse3DI	GCAATG	2 cut(s)	699, 933
Bse8I	GATNNNNATC	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	438, 908
BseGI	GGATG	1 cut(s)	583
BseJI	GATNNNNATC	1 cut(s)	366
BseLI	CCNNNNNNNGG	4 cut(s)	142, 618, 896, 913
BseMI	GCAATG	2 cut(s)	699, 933
BseNI	ACTGG	1 cut(s)	766
BseRI	GAGGAG	1 cut(s)	61
BseX3I	CGGCCG	1 cut(s)	956
BseXI	GCAGC	4 cut(s)	128, 466, 955, 985
BseYI	CCCAGC	2 cut(s)	482, 868
BsgI	GTGCAG	1 cut(s)	984
Bsh1285I	CGRYCG	1 cut(s)	959
BshFI	GGCC	3 cut(s)	622, 702, 958
BsiEI	CGRYCG	1 cut(s)	959
BsiHKAI	GWGCWC	1 cut(s)	682
BsiSI	CCGG	2 cut(s)	841, 959
BslFI	GGGAC	3 cut(s)	510, 644, 1091
BslI	CCNNNNNNNGG	4 cut(s)	142, 618, 896, 913
BsmFI	GGGAC	3 cut(s)	510, 644, 1091
BsnI	GGCC	3 cut(s)	622, 702, 958
Bsp119I	TTCGAA	1 cut(s)	95
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp143I	GATC	5 cut(s)	259, 367, 404, 415, 1012
Bsp1720I	GCTNAGC	1 cut(s)	607
BspACI	CCGC	4 cut(s)	891, 923, 955, 1075
BspANI	GGCC	3 cut(s)	622, 702, 958
BspLI	GGNNCC	2 cut(s)	377, 664
BspPI	GGATC	3 cut(s)	412, 423, 1007
BspQI	GCTCTTC	1 cut(s)	11
BspT104I	TTCGAA	1 cut(s)	95
BsrDI	GCAATG	2 cut(s)	699, 933
BsrFI	RCCGGY	1 cut(s)	958
BsrI	ACTGG	1 cut(s)	766
BssAI	RCCGGY	1 cut(s)	958
BssMI	GATC	5 cut(s)	259, 367, 404, 415, 1012
Bst2UI	CCWGG	2 cut(s)	438, 908
Bst4CI	ACNGT	1 cut(s)	594
Bst6I	CTCTTC	1 cut(s)	11
BstBI	TTCGAA	1 cut(s)	95
BstDEI	CTNAG	2 cut(s)	400, 607
BstF5I	GGATG	1 cut(s)	583
BstKTI	GATC	5 cut(s)	262, 370, 407, 418, 1015
BstMBI	GATC	5 cut(s)	259, 367, 404, 415, 1012
BstMCI	CGRYCG	1 cut(s)	959
BstMWI	GCNNNNNNNGC	4 cut(s)	488, 869, 923, 952
BstNI	CCWGG	2 cut(s)	438, 908
BstNSI	RCATGY	1 cut(s)	397
BstSCI	CCNGG	2 cut(s)	436, 906
BstSFI	CTRYAG	1 cut(s)	792
BstV1I	GCAGC	4 cut(s)	128, 466, 955, 985
BstV2I	GAAGAC	2 cut(s)	84, 454
BstX2I	RGATCY	1 cut(s)	404
BstYI	RGATCY	1 cut(s)	404
BstZI	CGGCCG	1 cut(s)	956
Bsu36I	CCTNAGG	1 cut(s)	400
BsuI	GTATCC	1 cut(s)	897
BsuRI	GGCC	3 cut(s)	622, 702, 958
BtsCI	GGATG	1 cut(s)	583
CaiI	CAGNNNCTG	1 cut(s)	913
Cfr10I	RCCGGY	1 cut(s)	958
Cfr13I	GGNCC	2 cut(s)	620, 838
Csp6I	GTAC	3 cut(s)	391, 743, 1056
CviAII	CATG	4 cut(s)	394, 425, 512, 816
CviQI	GTAC	3 cut(s)	391, 743, 1056
DdeI	CTNAG	2 cut(s)	400, 607
DpnI	GATC	5 cut(s)	261, 369, 406, 417, 1014
DpnII	GATC	5 cut(s)	259, 367, 404, 415, 1012
EaeI	YGGCCR	1 cut(s)	956
EagI	CGGCCG	1 cut(s)	956
Eam1104I	CTCTTC	1 cut(s)	11
EarI	CTCTTC	1 cut(s)	11
EclXI	CGGCCG	1 cut(s)	956
Eco47I	GGWCC	1 cut(s)	838
Eco52I	CGGCCG	1 cut(s)	956
Eco81I	CCTNAGG	1 cut(s)	400
EcoRII	CCWGG	2 cut(s)	436, 906
FaeI	CATG	4 cut(s)	397, 428, 515, 819
FaqI	GGGAC	3 cut(s)	510, 644, 1091
FatI	CATG	4 cut(s)	393, 424, 511, 815
FauI	CCCGC	2 cut(s)	898, 1068
Fnu4HI	GCNGC	6 cut(s)	117, 480, 924, 944, 956, 999
FokI	GGATG	1 cut(s)	570
Fsp4HI	GCNGC	6 cut(s)	117, 480, 924, 944, 956, 999
FspBI	CTAG	4 cut(s)	156, 500, 786, 1065
GluI	GCNGC	6 cut(s)	117, 480, 924, 944, 956, 999
GsaI	CCCAGC	2 cut(s)	486, 872
GsuI	CTGGAG	1 cut(s)	666
HaeIII	GGCC	3 cut(s)	622, 702, 958
HapII	CCGG	2 cut(s)	841, 959
Hin1II	CATG	4 cut(s)	397, 428, 515, 819
HinfI	GANTC	2 cut(s)	21, 709
HpaII	CCGG	2 cut(s)	841, 959
HphI	GGTGA	1 cut(s)	314
Hpy188I	TCNGA	5 cut(s)	45, 167, 350, 598, 721
Hpy188III	TCNNGA	4 cut(s)	683, 786, 938, 1016
HpyAV	CCTTC	1 cut(s)	569
HpyCH4III	ACNGT	1 cut(s)	594
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	6 cut(s)	152, 274, 491, 692, 815, 1001
HpyF10VI	GCNNNNNNNGC	4 cut(s)	488, 869, 923, 952
HpyF3I	CTNAG	2 cut(s)	400, 607
HpySE526I	ACGT	1 cut(s)	642
Hsp92II	CATG	4 cut(s)	397, 428, 515, 819
Kzo9I	GATC	5 cut(s)	259, 367, 404, 415, 1012
LguI	GCTCTTC	1 cut(s)	11
LmnI	GCTCC	5 cut(s)	381, 560, 685, 940, 1043
Lsp1109I	GCAGC	4 cut(s)	128, 466, 955, 985
MaeI	CTAG	4 cut(s)	156, 500, 786, 1065
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	2 cut(s)	873, 976
MalI	GATC	5 cut(s)	261, 369, 406, 417, 1014
MboI	GATC	5 cut(s)	259, 367, 404, 415, 1012
MboII	GAAGA	4 cut(s)	84, 335, 459, 484
MfeI	CAATTG	3 cut(s)	147, 704, 774
MflI	RGATCY	1 cut(s)	404
MhlI	GDGCHC	1 cut(s)	682
MluCI	AATT	8 cut(s)	53, 147, 160, 287, 704, 774, 781, 848
MlyI	GAGTC	1 cut(s)	703
MmeI	TCCRAC	1 cut(s)	582
MnlI	CCTC	6 cut(s)	82, 181, 406, 537, 890, 1038
MseI	TTAA	5 cut(s)	59, 311, 339, 570, 714
MslI	CAYNNNNRTG	1 cut(s)	423
MspI	CCGG	2 cut(s)	841, 959
MspR9I	CCNGG	2 cut(s)	438, 908
MunI	CAATTG	3 cut(s)	147, 704, 774
MvaI	CCWGG	2 cut(s)	438, 908
MwoI	GCNNNNNNNGC	4 cut(s)	488, 869, 923, 952
NdeII	GATC	5 cut(s)	259, 367, 404, 415, 1012
NlaIII	CATG	4 cut(s)	397, 428, 515, 819
NlaIV	GGNNCC	2 cut(s)	377, 664
NmuCI	GTSAC	1 cut(s)	976
NspI	RCATGY	1 cut(s)	397
NspV	TTCGAA	1 cut(s)	95
PciSI	GCTCTTC	1 cut(s)	11
PfeI	GAWTC	1 cut(s)	21
PflMI	CCANNNNNTGG	1 cut(s)	913
PkrI	GCNGC	6 cut(s)	118, 481, 925, 945, 957, 1000
PleI	GAGTC	1 cut(s)	703
PpsI	GAGTC	1 cut(s)	703
Psp6I	CCWGG	2 cut(s)	436, 906
PspFI	CCCAGC	2 cut(s)	482, 868
PspGI	CCWGG	2 cut(s)	436, 906
PspN4I	GGNNCC	2 cut(s)	377, 664
PspPI	GGNCC	2 cut(s)	620, 838
PstNI	CAGNNNCTG	1 cut(s)	913
PsuI	RGATCY	1 cut(s)	404
RsaI	GTAC	3 cut(s)	392, 744, 1057
RsaNI	GTAC	3 cut(s)	391, 743, 1056
RseI	CAYNNNNRTG	1 cut(s)	423
SapI	GCTCTTC	1 cut(s)	11
SaqAI	TTAA	5 cut(s)	59, 311, 339, 570, 714
SatI	GCNGC	6 cut(s)	117, 480, 924, 944, 956, 999
Sau3AI	GATC	5 cut(s)	259, 367, 404, 415, 1012
Sau96I	GGNCC	2 cut(s)	620, 838
ScaI	AGTACT	1 cut(s)	744
SchI	GAGTC	1 cut(s)	703
ScrFI	CCNGG	2 cut(s)	438, 908
SduI	GDGCHC	1 cut(s)	682
SfcI	CTRYAG	1 cut(s)	792
SfuI	TTCGAA	1 cut(s)	95
SinI	GGWCC	1 cut(s)	838
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	8 cut(s)	53, 147, 160, 287, 704, 774, 781, 848
SsiI	CCGC	4 cut(s)	891, 923, 955, 1075
SspMI	CTAG	4 cut(s)	156, 500, 786, 1065
StyD4I	CCNGG	2 cut(s)	436, 906
TaaI	ACNGT	1 cut(s)	594
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	2 cut(s)	95, 202
TasI	AATT	8 cut(s)	53, 147, 160, 287, 704, 774, 781, 848
TatI	WGTACW	3 cut(s)	390, 742, 1055
TauI	GCSGC	2 cut(s)	926, 958
TfiI	GAWTC	1 cut(s)	21
Tru1I	TTAA	5 cut(s)	59, 311, 339, 570, 714
Tru9I	TTAA	5 cut(s)	59, 311, 339, 570, 714
TseFI	GTSAC	1 cut(s)	976
TseI	GCWGC	4 cut(s)	116, 479, 943, 998
Tsp45I	GTSAC	1 cut(s)	976
TspDTI	ATGAA	2 cut(s)	485, 588
TspGWI	ACGGA	2 cut(s)	125, 684
Van91I	CCANNNNNTGG	1 cut(s)	913
VpaK11BI	GGWCC	1 cut(s)	838
XapI	RAATTY	3 cut(s)	160, 287, 848
XbaI	TCTAGA	1 cut(s)	785
XceI	RCATGY	1 cut(s)	397
XspI	CTAG	4 cut(s)	156, 500, 786, 1065
ZrmI	AGTACT	1 cut(s)	744

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.