Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Forward (+)

26302974 .. 26306211

Gene Structure 3238 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1182700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1146 bp

ATGAGTTGGTTCCTGTGTTCCGGCGAGTTAAGCAGAAAAGCTGCAAATAAGAAGAAGATCAAGAAGAACAAGCCAGAAGATCAGATCTCATCAATTTCAGAACAACTGAAGGCAAATTCAGGACTGTCAGTAAAGGAGGGTTCTAAGGATGGAGGCTCTGGTCACATTGCAGCACATACATTTACATTTCGAGAATTGGCAGTGGCAACAAAGAACTTTCGAGCAGATTGTATTTTAGGTGAAGGAGGTTTTGGTCAAGTATATAAGGGGCGCTTGGAGAGCACGAATCAGGTAGTGGCCATAAAGCAACTTGATTCCAATGGGCTTCAAGGGAACAGGGAATTCCTCGTCGAAGTATTAATGTTGAGCCTACTTCACCATCCCAATCTTGTGAACTTAGTAGGCTATTGTGCTGATGGGGATCAGAGGCTTTTGGTATATGAGTACATGCCATTGGGATCTTTGGAAGACCATCTGCACGATCTACCGCCAGATGGAAAACATCTTGACTGGAACACGAGAATGACAATAGCTGCTGGTGCTGCAAAAGGCTTGGAGCATTTGCACGACAAAGCAAACCCTCCTGTTATTTATCGTGATCTTAAATGCTCAAACATTTTACTTGGCGAAGGGTACCATCCTAAGCTATCAGATTTTGGCTTGGCAAAGTTGGGTCCTGTGGGAGATAATACTCATGTTTCCACTAGGGTGATGGGAACCTATGGATATTGTGCCCCTGAATATGCAATGACTGGTCAGCTCACATTGAAATCAGATGTATACAGCTTCGGGGTTGTTCTTCTGGAAATCATTACCGGAAGAAAGGCAATTGACAATTCCAGGGCTGCCGGGGAACACAATTTGGTCACATGGGCCCGCCCCTTGTTTAGAGATCGGAGGAAATTTTGGCAGATTGCTGATCCAATGCTCCAAGGTCAGTATCCGGTGAGGGGAATGTATCAGGCTCTTGCCGTTGCTGCAATGTGTGTCCAGGAACACCCTAATATGCGACCTGTCATAGCAGATGTGGTCACAGCCCTTAATTACCTTGCTTCCCAAAAGTATGATCCTGAAGCACGGCAATCACACAGCTCTAGCACCGCATCGTCCACTCCTAGGTCTAGGAGGGAAGTTTTAACTTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

382

Amino Acids

42.02

Weight (kDa)

8.74

Isoelectric Point (pI)

30.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	77 - 344	9.8e-46	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	78 - 342	4.2e-44	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	633
AccI	GTMKAC	1 cut(s)	780
AciI	CCGC	3 cut(s)	488, 877, 1101
AclWI	GGATC	4 cut(s)	429, 466, 914, 1061
AcoI	YGGCCR	1 cut(s)	297
AcsI	RAATTY	3 cut(s)	115, 341, 902
AcuI	CTGAAG	2 cut(s)	128, 1092
AfaI	GTAC	2 cut(s)	446, 635
AfiI	CCNNNNNNNGG	3 cut(s)	494, 950, 1116
AgsI	TTSAA	2 cut(s)	329, 769
AjnI	CCWGG	2 cut(s)	839, 990
AjuI	GAANNNNNNNTTGG	2 cut(s)	234, 266
AleI	CACNNNNGTG	1 cut(s)	707
AluBI	AGCT	6 cut(s)	41, 533, 646, 760, 786, 1092
AluI	AGCT	6 cut(s)	41, 533, 646, 760, 786, 1092
Alw21I	GWGCWC	1 cut(s)	284
AlwI	GGATC	4 cut(s)	429, 466, 914, 1061
AoxI	GGCC	2 cut(s)	297, 873
ApaI	GGGCCC	1 cut(s)	877
ApeKI	GCWGC	6 cut(s)	41, 170, 533, 542, 845, 977
ApoI	RAATTY	3 cut(s)	115, 341, 902
AseI	ATTAAT	1 cut(s)	359
Asp718I	GGTACC	1 cut(s)	633
AspA2I	CCTAGG	1 cut(s)	1115
AspLEI	GCGC	1 cut(s)	273
AspS9I	GGNCC	3 cut(s)	674, 873, 874
AsuC2I	CCSGG	1 cut(s)	850
AsuHPI	GGTGA	4 cut(s)	251, 368, 721, 958
AvaII	GGWCC	1 cut(s)	674
AvrII	CCTAGG	1 cut(s)	1115
BaeGI	GKGCMC	2 cut(s)	736, 877
BalI	TGGCCA	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	633
BanII	GRGCYC	1 cut(s)	877
BauI	CACGAG	1 cut(s)	517
BbsI	GAAGAC	1 cut(s)	474
Bbv12I	GWGCWC	1 cut(s)	284
BbvI	GCAGC	6 cut(s)	28, 182, 520, 529, 832, 964
BccI	CCATC	7 cut(s)	143, 387, 410, 480, 488, 645, 706
BceAI	ACGGC	2 cut(s)	956, 1094
BciT130I	CCWGG	2 cut(s)	841, 992
BciVI	GTATCC	1 cut(s)	951
BcnI	CCSGG	1 cut(s)	850
BfaI	CTAG	4 cut(s)	705, 1095, 1116, 1122
BfoI	RGCGCY	1 cut(s)	274
BfuI	GTATCC	1 cut(s)	951
BglII	AGATCT	1 cut(s)	84
BisI	GCNGC	6 cut(s)	42, 171, 534, 543, 846, 978
BlnI	CCTAGG	1 cut(s)	1115
BlsI	GCNGC	6 cut(s)	43, 172, 535, 544, 847, 979
Bme1390I	CCNGG	3 cut(s)	841, 850, 992
Bme18I	GGWCC	1 cut(s)	674
BmgT120I	GGNCC	3 cut(s)	674, 873, 874
BmiI	GGNNCC	5 cut(s)	11, 635, 675, 718, 875
BmrFI	CCNGG	3 cut(s)	841, 850, 992
BmsI	GCATC	1 cut(s)	1112
BpiI	GAAGAC	1 cut(s)	474
Bpu10I	CCTNAGC	1 cut(s)	642
BpuMI	CCSGG	1 cut(s)	850
BsaBI	GATNNNNATC	1 cut(s)	420
BsaJI	CCNNGG	4 cut(s)	840, 849, 931, 1115
BsaWI	WCCGGW	2 cut(s)	815, 943
Bsc4I	CCNNNNNNNGG	3 cut(s)	494, 950, 1116
Bse1I	ACTGG	2 cut(s)	515, 757
Bse3DI	GCAATG	3 cut(s)	165, 753, 987
Bse8I	GATNNNNATC	1 cut(s)	420
BseBI	CCWGG	2 cut(s)	841, 992
BseDI	CCNNGG	4 cut(s)	840, 849, 931, 1115
BseGI	GGATG	3 cut(s)	154, 379, 637
BseJI	GATNNNNATC	1 cut(s)	420
BseLI	CCNNNNNNNGG	3 cut(s)	494, 950, 1116
BseMI	GCAATG	3 cut(s)	165, 753, 987
BseNI	ACTGG	2 cut(s)	515, 757
BseSI	GKGCMC	2 cut(s)	736, 877
BseXI	GCAGC	6 cut(s)	28, 182, 520, 529, 832, 964
BsgI	GTGCAG	1 cut(s)	461
BshFI	GGCC	2 cut(s)	299, 875
BshNI	GGYRCC	1 cut(s)	633
BsiHKAI	GWGCWC	1 cut(s)	284
BsiSI	CCGG	4 cut(s)	21, 816, 849, 944
BslI	CCNNNNNNNGG	3 cut(s)	494, 950, 1116
BsnI	GGCC	2 cut(s)	299, 875
Bsp120I	GGGCCC	1 cut(s)	873
Bsp1286I	GDGCHC	3 cut(s)	284, 736, 877
BspACI	CCGC	3 cut(s)	488, 877, 1101
BspANI	GGCC	2 cut(s)	299, 875
BspLI	GGNNCC	5 cut(s)	11, 635, 675, 718, 875
BspPI	GGATC	4 cut(s)	429, 466, 914, 1061
BspT107I	GGYRCC	1 cut(s)	633
BsrDI	GCAATG	3 cut(s)	165, 753, 987
BsrI	ACTGG	2 cut(s)	515, 757
BssECI	CCNNGG	4 cut(s)	840, 849, 931, 1115
BssNAI	GTATAC	1 cut(s)	781
BssSI	CACGAG	1 cut(s)	517
BssT1I	CCWWGG	2 cut(s)	931, 1115
Bst1107I	GTATAC	1 cut(s)	781
Bst2BI	CACGAG	1 cut(s)	517
Bst2UI	CCWGG	2 cut(s)	841, 992
Bst4CI	ACNGT	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	877
BstDEI	CTNAG	3 cut(s)	144, 397, 642
BstF5I	GGATG	3 cut(s)	154, 379, 637
BstH2I	RGCGCY	1 cut(s)	274
BstHHI	GCGC	1 cut(s)	273
BstMWI	GCNNNNNNNGC	5 cut(s)	30, 279, 539, 542, 977
BstNI	CCWGG	2 cut(s)	841, 992
BstNSI	RCATGY	1 cut(s)	451
BstSCI	CCNGG	3 cut(s)	839, 848, 990
BstSLI	GKGCMC	2 cut(s)	736, 877
BstV1I	GCAGC	6 cut(s)	28, 182, 520, 529, 832, 964
BstV2I	GAAGAC	1 cut(s)	474
BstX2I	RGATCY	2 cut(s)	84, 458
BstYI	RGATCY	2 cut(s)	84, 458
BstZ17I	GTATAC	1 cut(s)	781
BsuI	GTATCC	1 cut(s)	951
BsuRI	GGCC	2 cut(s)	299, 875
BtsCI	GGATG	3 cut(s)	154, 379, 637
BtsI	GCAGTG	1 cut(s)	207
BtsIMutI	CAGTG	1 cut(s)	207
Cac8I	GCNNGC	1 cut(s)	877
CfoI	GCGC	1 cut(s)	273
Cfr13I	GGNCC	3 cut(s)	674, 873, 874
Csp6I	GTAC	2 cut(s)	445, 634
CviAII	CATG	3 cut(s)	448, 695, 870
CviQI	GTAC	2 cut(s)	445, 634
DdeI	CTNAG	3 cut(s)	144, 397, 642
EaeI	YGGCCR	1 cut(s)	297
Eco130I	CCWWGG	2 cut(s)	931, 1115
Eco24I	GRGCYC	1 cut(s)	877
Eco47I	GGWCC	1 cut(s)	674
Eco57I	CTGAAG	2 cut(s)	128, 1092
EcoO109I	RGGNCCY	1 cut(s)	674
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	2 cut(s)	839, 990
EcoT14I	CCWWGG	2 cut(s)	931, 1115
EcoT38I	GRGCYC	1 cut(s)	877
ErhI	CCWWGG	2 cut(s)	931, 1115
FaeI	CATG	3 cut(s)	451, 698, 873
FalI	AAGNNNNNCTT	2 cut(s)	257, 289
FatI	CATG	3 cut(s)	447, 694, 869
FauI	CCCGC	1 cut(s)	884
FblI	GTMKAC	1 cut(s)	780
Fnu4HI	GCNGC	6 cut(s)	42, 171, 534, 543, 846, 978
FokI	GGATG	3 cut(s)	161, 366, 624
FriOI	GRGCYC	1 cut(s)	877
Fsp4HI	GCNGC	6 cut(s)	42, 171, 534, 543, 846, 978
FspBI	CTAG	4 cut(s)	705, 1095, 1116, 1122
GlaI	GCGC	1 cut(s)	272
GluI	GCNGC	6 cut(s)	42, 171, 534, 543, 846, 978
HaeII	RGCGCY	1 cut(s)	274
HaeIII	GGCC	2 cut(s)	299, 875
HapII	CCGG	4 cut(s)	21, 816, 849, 944
HhaI	GCGC	1 cut(s)	273
Hin1II	CATG	3 cut(s)	451, 698, 873
Hin6I	GCGC	1 cut(s)	271
HinP1I	GCGC	1 cut(s)	271
HinfI	GANTC	2 cut(s)	286, 314
HpaII	CCGG	4 cut(s)	21, 816, 849, 944
HphI	GGTGA	4 cut(s)	251, 368, 721, 958
Hpy166II	GTNNAC	3 cut(s)	394, 781, 1110
Hpy188I	TCNGA	6 cut(s)	84, 100, 426, 652, 775, 897
Hpy188III	TCNNGA	7 cut(s)	61, 120, 191, 506, 596, 803, 1070
Hpy8I	GTNNAC	3 cut(s)	394, 781, 1110
Hpy99I	CGWCG	1 cut(s)	353
HpyAV	CCTTC	3 cut(s)	103, 236, 623
HpyCH4III	ACNGT	1 cut(s)	126
HpyCH4V	TGCA	7 cut(s)	44, 170, 478, 545, 565, 746, 980
HpyF10VI	GCNNNNNNNGC	5 cut(s)	30, 279, 539, 542, 977
HpyF3I	CTNAG	3 cut(s)	144, 397, 642
Hsp92II	CATG	3 cut(s)	451, 698, 873
HspAI	GCGC	1 cut(s)	271
KpnI	GGTACC	1 cut(s)	637
LmnI	GCTCC	2 cut(s)	556, 933
Lsp1109I	GCAGC	6 cut(s)	28, 182, 520, 529, 832, 964
LweI	GCATC	1 cut(s)	1112
MaeI	CTAG	4 cut(s)	705, 1095, 1116, 1122
MaeIII	GTNAC	3 cut(s)	161, 865, 1030
MboII	GAAGA	7 cut(s)	64, 67, 76, 89, 479, 791, 831
MfeI	CAATTG	1 cut(s)	828
MflI	RGATCY	2 cut(s)	84, 458
MhlI	GDGCHC	3 cut(s)	284, 736, 877
MlsI	TGGCCA	1 cut(s)	299
MluCI	AATT	9 cut(s)	93, 115, 194, 341, 828, 835, 859, 902, 1042
MluNI	TGGCCA	1 cut(s)	299
MnlI	CCTC	9 cut(s)	130, 146, 239, 356, 420, 591, 891, 942, 1119
Mox20I	TGGCCA	1 cut(s)	299
MscI	TGGCCA	1 cut(s)	299
MseI	TTAA	5 cut(s)	29, 359, 603, 1041, 1136
MslI	CAYNNNNRTG	2 cut(s)	521, 707
Msp20I	TGGCCA	1 cut(s)	299
MspI	CCGG	4 cut(s)	21, 816, 849, 944
MspR9I	CCNGG	3 cut(s)	841, 850, 992
MunI	CAATTG	1 cut(s)	828
MvaI	CCWGG	2 cut(s)	841, 992
MwoI	GCNNNNNNNGC	5 cut(s)	30, 279, 539, 542, 977
NciI	CCSGG	1 cut(s)	850
NlaIII	CATG	3 cut(s)	451, 698, 873
NlaIV	GGNNCC	5 cut(s)	11, 635, 675, 718, 875
NmuCI	GTSAC	3 cut(s)	161, 865, 1030
NspI	RCATGY	1 cut(s)	451
OliI	CACNNNNGTG	1 cut(s)	707
PfeI	GAWTC	2 cut(s)	286, 314
PfoI	TCCNGGA	1 cut(s)	990
PkrI	GCNGC	6 cut(s)	43, 172, 535, 544, 847, 979
PpuMI	RGGWCCY	1 cut(s)	674
PshBI	ATTAAT	1 cut(s)	359
Psp5II	RGGWCCY	1 cut(s)	674
Psp6I	CCWGG	2 cut(s)	839, 990
PspGI	CCWGG	2 cut(s)	839, 990
PspN4I	GGNNCC	5 cut(s)	11, 635, 675, 718, 875
PspOMI	GGGCCC	1 cut(s)	873
PspPI	GGNCC	3 cut(s)	674, 873, 874
PspPPI	RGGWCCY	1 cut(s)	674
PsuI	RGATCY	2 cut(s)	84, 458
RsaI	GTAC	2 cut(s)	446, 635
RsaNI	GTAC	2 cut(s)	445, 634
RseI	CAYNNNNRTG	2 cut(s)	521, 707
SaqAI	TTAA	5 cut(s)	29, 359, 603, 1041, 1136
SatI	GCNGC	6 cut(s)	42, 171, 534, 543, 846, 978
Sau96I	GGNCC	3 cut(s)	674, 873, 874
ScrFI	CCNGG	3 cut(s)	841, 850, 992
SduI	GDGCHC	3 cut(s)	284, 736, 877
SfaNI	GCATC	1 cut(s)	1112
SinI	GGWCC	1 cut(s)	674
SmiMI	CAYNNNNRTG	2 cut(s)	521, 707
Sse9I	AATT	9 cut(s)	93, 115, 194, 341, 828, 835, 859, 902, 1042
SsiI	CCGC	3 cut(s)	488, 877, 1101
SspMI	CTAG	4 cut(s)	705, 1095, 1116, 1122
StyD4I	CCNGG	3 cut(s)	839, 848, 990
StyI	CCWWGG	2 cut(s)	931, 1115
TaaI	ACNGT	1 cut(s)	126
TaqI	TCGA	3 cut(s)	190, 220, 351
TasI	AATT	9 cut(s)	93, 115, 194, 341, 828, 835, 859, 902, 1042
TatI	WGTACW	1 cut(s)	444
TfiI	GAWTC	2 cut(s)	286, 314
Tru1I	TTAA	5 cut(s)	29, 359, 603, 1041, 1136
Tru9I	TTAA	5 cut(s)	29, 359, 603, 1041, 1136
TscAI	CASTG	1 cut(s)	207
TseFI	GTSAC	3 cut(s)	161, 865, 1030
TseI	GCWGC	6 cut(s)	41, 170, 533, 542, 845, 977
Tsp45I	GTSAC	3 cut(s)	161, 865, 1030
TspDTI	ATGAA	1 cut(s)	1131
TspRI	CASTG	1 cut(s)	207
VpaK11BI	GGWCC	1 cut(s)	674
VspI	ATTAAT	1 cut(s)	359
XapI	RAATTY	3 cut(s)	115, 341, 902
XceI	RCATGY	1 cut(s)	451
XcmI	CCANNNNNNNNNTGG	1 cut(s)	709
XmaJI	CCTAGG	1 cut(s)	1115
XmiI	GTMKAC	1 cut(s)	780
XspI	CTAG	4 cut(s)	705, 1095, 1116, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.