Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004524.1

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Forward (+)

33081 .. 35362

Gene Structure 2282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004524.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

atgggttggattccctgttctggtaattccaacagtaaagcaaagaagaacaagaagaaaaggaagaattcaatagagttggaggagaggccatttgatcagatcaaacccacttcagaattattaaacacaaactcctctttgagtgtcaaagagtcttcgaaagatggggaacacatagcagcacagacttttgtgttccgtgatttggcagttgcaactagaaatttcagagcagaatgtcttttgggggagggtggctttggtcgagtatataaaggacatttggaaagtataaatcaggtagtagctatcaaacaacttgatcgtaatgggttgcaagggaacagggaatttcttgttgaagtgttgatgttaagtctgcttcaccaccctaaccttgttaatcttctcggttattgtgctgatggagatcaaaggctccttgtttatgagtacatgcccttaggatctttggaggatcatttacatgatatgtcgcctggtaagagaagacttgattggaatacaagaatgaagatagctgctgggtctgcaaagggactagagtatttacatgacaaagcaagtcctcctgtgatatacagagatttgaaatgctccaacatattgcttaatgaagggtatcatcccaaactgtctgattttggcttagccaaacttgggcctgttggggacaacacccacgtttctacaagggttatgggaacctacggatattgtgctccagagtatgcaatgacaggccaattgactcttaaatcagatgtttatagctttggggtagtacttttggaaatcattactggcagaaaggcaattgacaattctagagctacaggagagcagaacttggttgcatgggcaagacctttgttcaaggaccggaaaaatttttcacaaatggcagacccatcgttacaaggtcagtatcccgcaagagggttataccaagctctggctgttgcggcaatgtgtgttcaggagcagcctaatatgcggccggttatagctgatgttgtcacagctttgacataccttgctgcacaaaagtatgatcctgaaacacagcctccccaaagctcccgtcttgccccttgtactccccctagaaccaagcgggacagcgaaaggaaagctcaatggtggtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009966 GO:0009967 GO:0009987 GO:0010646 GO:0010647 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023051 GO:0023052 GO:0023056 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1900457 GO:1900459 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

390

Amino Acids

43.56

Weight (kDa)

9.06

Isoelectric Point (pI)

38.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	979
AciI	CCGC	4 cut(s)	957, 989, 1021, 1141
AclWI	GGATC	3 cut(s)	478, 489, 1073
AcoI	YGGCCR	1 cut(s)	1022
AcsI	RAATTY	4 cut(s)	67, 226, 353, 913
AcuI	CTGAAG	1 cut(s)	99
AfaI	GTAC	3 cut(s)	458, 810, 1123
AfiI	CCNNNNNNNGG	6 cut(s)	20, 208, 684, 962, 963, 979
AgsI	TTSAA	4 cut(s)	72, 365, 616, 901
AjnI	CCWGG	1 cut(s)	502
AjuI	GAANNNNNNNTTGG	2 cut(s)	505, 537
AloI	GAACNNNNNNTCC	1 cut(s)	33
AluBI	AGCT	9 cut(s)	311, 545, 798, 857, 977, 1034, 1049, 1104, 1160
AluI	AGCT	9 cut(s)	311, 545, 798, 857, 977, 1034, 1049, 1104, 1160
Alw21I	GWGCWC	1 cut(s)	748
AlwI	GGATC	3 cut(s)	478, 489, 1073
AoxI	GGCC	4 cut(s)	89, 686, 766, 1022
ApeKI	GCWGC	4 cut(s)	182, 545, 1009, 1064
ApoI	RAATTY	4 cut(s)	67, 226, 353, 913
ArsI	GACNNNNNNTTYG	2 cut(s)	1093, 1125
AspS9I	GGNCC	2 cut(s)	686, 904
AsuHPI	GGTGA	1 cut(s)	380
AsuII	TTCGAA	1 cut(s)	161
AvaII	GGWCC	1 cut(s)	904
AxyI	CCTNAGG	1 cut(s)	466
BbsI	GAAGAC	2 cut(s)	150, 520
Bbv12I	GWGCWC	1 cut(s)	748
BbvI	GCAGC	4 cut(s)	194, 532, 1021, 1051
BccI	CCATC	3 cut(s)	161, 422, 943
BcgI	CGANNNNNNTGC	2 cut(s)	918, 952
BciT130I	CCWGG	1 cut(s)	504
BciVI	GTATCC	1 cut(s)	963
BclI	TGATCA	1 cut(s)	97
BfaI	CTAG	4 cut(s)	222, 566, 852, 1131
BfmI	CTRYAG	1 cut(s)	858
BfuI	GTATCC	1 cut(s)	963
BisI	GCNGC	6 cut(s)	183, 546, 990, 1010, 1022, 1065
BlpI	GCTNAGC	1 cut(s)	673
BlsI	GCNGC	6 cut(s)	184, 547, 991, 1011, 1023, 1066
BmcAI	AGTACT	1 cut(s)	810
Bme1390I	CCNGG	1 cut(s)	504
Bme18I	GGWCC	1 cut(s)	904
BmgT120I	GGNCC	2 cut(s)	686, 904
BmiI	GGNNCC	2 cut(s)	443, 730
BmrFI	CCNGG	1 cut(s)	504
BpiI	GAAGAC	2 cut(s)	150, 520
BpmI	CTGGAG	1 cut(s)	732
Bpu1102I	GCTNAGC	1 cut(s)	673
Bpu14I	TTCGAA	1 cut(s)	161
BsaBI	GATNNNNATC	1 cut(s)	432
BsaWI	WCCGGW	1 cut(s)	906
BsaXI	ACNNNNNCTCC	4 cut(s)	119, 149, 1078, 1108
Bsc4I	CCNNNNNNNGG	6 cut(s)	20, 208, 684, 962, 963, 979
Bse118I	RCCGGY	1 cut(s)	1024
Bse1I	ACTGG	1 cut(s)	832
Bse21I	CCTNAGG	1 cut(s)	466
Bse3DI	GCAATG	2 cut(s)	765, 999
Bse8I	GATNNNNATC	1 cut(s)	432
BseBI	CCWGG	1 cut(s)	504
BseGI	GGATG	1 cut(s)	649
BseJI	GATNNNNATC	1 cut(s)	432
BseLI	CCNNNNNNNGG	6 cut(s)	20, 208, 684, 962, 963, 979
BseMI	GCAATG	2 cut(s)	765, 999
BseNI	ACTGG	1 cut(s)	832
BseRI	GAGGAG	2 cut(s)	98, 127
BseX3I	CGGCCG	1 cut(s)	1022
BseXI	GCAGC	4 cut(s)	194, 532, 1021, 1051
BseYI	CCCAGC	1 cut(s)	548
BsgI	GTGCAG	1 cut(s)	1050
Bsh1285I	CGRYCG	1 cut(s)	1025
BshFI	GGCC	4 cut(s)	91, 688, 768, 1024
BsiEI	CGRYCG	1 cut(s)	1025
BsiHKAI	GWGCWC	1 cut(s)	748
BsiSI	CCGG	2 cut(s)	907, 1025
BslFI	GGGAC	3 cut(s)	576, 710, 1157
BslI	CCNNNNNNNGG	6 cut(s)	20, 208, 684, 962, 963, 979
BsmFI	GGGAC	3 cut(s)	576, 710, 1157
BsnI	GGCC	4 cut(s)	91, 688, 768, 1024
Bsp119I	TTCGAA	1 cut(s)	161
Bsp1286I	GDGCHC	1 cut(s)	748
Bsp143I	GATC	7 cut(s)	97, 102, 325, 433, 470, 481, 1078
Bsp1720I	GCTNAGC	1 cut(s)	673
BspACI	CCGC	4 cut(s)	957, 989, 1021, 1141
BspANI	GGCC	4 cut(s)	91, 688, 768, 1024
BspLI	GGNNCC	2 cut(s)	443, 730
BspPI	GGATC	3 cut(s)	478, 489, 1073
BspT104I	TTCGAA	1 cut(s)	161
BsrDI	GCAATG	2 cut(s)	765, 999
BsrFI	RCCGGY	1 cut(s)	1024
BsrI	ACTGG	1 cut(s)	832
BssAI	RCCGGY	1 cut(s)	1024
BssMI	GATC	7 cut(s)	97, 102, 325, 433, 470, 481, 1078
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	2 cut(s)	35, 660
BstBI	TTCGAA	1 cut(s)	161
BstDEI	CTNAG	2 cut(s)	466, 673
BstF5I	GGATG	1 cut(s)	649
BstKTI	GATC	7 cut(s)	100, 105, 328, 436, 473, 484, 1081
BstMBI	GATC	7 cut(s)	97, 102, 325, 433, 470, 481, 1078
BstMCI	CGRYCG	1 cut(s)	1025
BstMWI	GCNNNNNNNGC	3 cut(s)	554, 989, 1018
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	463
BstSCI	CCNGG	1 cut(s)	502
BstSFI	CTRYAG	1 cut(s)	858
BstV1I	GCAGC	4 cut(s)	194, 532, 1021, 1051
BstV2I	GAAGAC	2 cut(s)	150, 520
BstX2I	RGATCY	1 cut(s)	470
BstYI	RGATCY	1 cut(s)	470
BstZI	CGGCCG	1 cut(s)	1022
Bsu36I	CCTNAGG	1 cut(s)	466
BsuI	GTATCC	1 cut(s)	963
BsuRI	GGCC	4 cut(s)	91, 688, 768, 1024
BtsCI	GGATG	1 cut(s)	649
Cfr10I	RCCGGY	1 cut(s)	1024
Cfr13I	GGNCC	2 cut(s)	686, 904
Csp6I	GTAC	3 cut(s)	457, 809, 1122
CviAII	CATG	4 cut(s)	460, 491, 578, 882
CviQI	GTAC	3 cut(s)	457, 809, 1122
DdeI	CTNAG	2 cut(s)	466, 673
DpnI	GATC	7 cut(s)	99, 104, 327, 435, 472, 483, 1080
DpnII	GATC	7 cut(s)	97, 102, 325, 433, 470, 481, 1078
EaeI	YGGCCR	1 cut(s)	1022
EagI	CGGCCG	1 cut(s)	1022
EclXI	CGGCCG	1 cut(s)	1022
Eco47I	GGWCC	1 cut(s)	904
Eco52I	CGGCCG	1 cut(s)	1022
Eco57I	CTGAAG	1 cut(s)	99
Eco81I	CCTNAGG	1 cut(s)	466
EcoRI	GAATTC	1 cut(s)	67
EcoRII	CCWGG	1 cut(s)	502
FaeI	CATG	4 cut(s)	463, 494, 581, 885
FaqI	GGGAC	3 cut(s)	576, 710, 1157
FatI	CATG	4 cut(s)	459, 490, 577, 881
FauI	CCCGC	2 cut(s)	964, 1134
FbaI	TGATCA	1 cut(s)	97
Fnu4HI	GCNGC	6 cut(s)	183, 546, 990, 1010, 1022, 1065
FokI	GGATG	1 cut(s)	636
Fsp4HI	GCNGC	6 cut(s)	183, 546, 990, 1010, 1022, 1065
FspBI	CTAG	4 cut(s)	222, 566, 852, 1131
GluI	GCNGC	6 cut(s)	183, 546, 990, 1010, 1022, 1065
GsaI	CCCAGC	1 cut(s)	552
GsuI	CTGGAG	1 cut(s)	732
HaeIII	GGCC	4 cut(s)	91, 688, 768, 1024
HapII	CCGG	2 cut(s)	907, 1025
Hin1II	CATG	4 cut(s)	463, 494, 581, 885
HinfI	GANTC	3 cut(s)	10, 155, 775
HpaII	CCGG	2 cut(s)	907, 1025
HphI	GGTGA	1 cut(s)	380
Hpy188I	TCNGA	5 cut(s)	102, 118, 233, 664, 787
Hpy188III	TCNNGA	4 cut(s)	749, 852, 1004, 1082
HpyAV	CCTTC	1 cut(s)	635
HpyCH4III	ACNGT	2 cut(s)	35, 660
HpyCH4IV	ACGT	1 cut(s)	708
HpyCH4V	TGCA	6 cut(s)	218, 340, 557, 758, 881, 1067
HpyF10VI	GCNNNNNNNGC	3 cut(s)	554, 989, 1018
HpyF3I	CTNAG	2 cut(s)	466, 673
HpySE526I	ACGT	1 cut(s)	708
Hsp92II	CATG	4 cut(s)	463, 494, 581, 885
Ksp22I	TGATCA	1 cut(s)	97
Kzo9I	GATC	7 cut(s)	97, 102, 325, 433, 470, 481, 1078
LmnI	GCTCC	5 cut(s)	447, 626, 751, 1006, 1109
Lsp1109I	GCAGC	4 cut(s)	194, 532, 1021, 1051
MaeI	CTAG	4 cut(s)	222, 566, 852, 1131
MaeII	ACGT	1 cut(s)	708
MaeIII	GTNAC	2 cut(s)	939, 1042
MalI	GATC	7 cut(s)	99, 104, 327, 435, 472, 483, 1080
MboI	GATC	7 cut(s)	97, 102, 325, 433, 470, 481, 1078
MboII	GAAGA	7 cut(s)	58, 67, 76, 150, 401, 525, 550
MfeI	CAATTG	2 cut(s)	770, 840
MflI	RGATCY	1 cut(s)	470
MhlI	GDGCHC	1 cut(s)	748
MluCI	AATT	9 cut(s)	25, 67, 119, 226, 353, 770, 840, 847, 913
MlyI	GAGTC	2 cut(s)	164, 769
MmeI	TCCRAC	3 cut(s)	54, 60, 648
MnlI	CCTC	8 cut(s)	76, 81, 148, 247, 472, 603, 956, 1104
MseI	TTAA	5 cut(s)	125, 377, 405, 636, 780
MslI	CAYNNNNRTG	1 cut(s)	489
MspI	CCGG	2 cut(s)	907, 1025
MspR9I	CCNGG	1 cut(s)	504
MunI	CAATTG	2 cut(s)	770, 840
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	3 cut(s)	554, 989, 1018
NdeII	GATC	7 cut(s)	97, 102, 325, 433, 470, 481, 1078
NlaIII	CATG	4 cut(s)	463, 494, 581, 885
NlaIV	GGNNCC	2 cut(s)	443, 730
NmuCI	GTSAC	1 cut(s)	1042
NspI	RCATGY	1 cut(s)	463
NspV	TTCGAA	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	10
PflMI	CCANNNNNTGG	1 cut(s)	979
PkrI	GCNGC	6 cut(s)	184, 547, 991, 1011, 1023, 1066
PleI	GAGTC	2 cut(s)	163, 769
PpsI	GAGTC	2 cut(s)	163, 769
Psp6I	CCWGG	1 cut(s)	502
PspFI	CCCAGC	1 cut(s)	548
PspGI	CCWGG	1 cut(s)	502
PspN4I	GGNNCC	2 cut(s)	443, 730
PspPI	GGNCC	2 cut(s)	686, 904
PsuI	RGATCY	1 cut(s)	470
RsaI	GTAC	3 cut(s)	458, 810, 1123
RsaNI	GTAC	3 cut(s)	457, 809, 1122
RseI	CAYNNNNRTG	1 cut(s)	489
SaqAI	TTAA	5 cut(s)	125, 377, 405, 636, 780
SatI	GCNGC	6 cut(s)	183, 546, 990, 1010, 1022, 1065
Sau3AI	GATC	7 cut(s)	97, 102, 325, 433, 470, 481, 1078
Sau96I	GGNCC	2 cut(s)	686, 904
ScaI	AGTACT	1 cut(s)	810
SchI	GAGTC	2 cut(s)	164, 769
ScrFI	CCNGG	1 cut(s)	504
SduI	GDGCHC	1 cut(s)	748
SfcI	CTRYAG	1 cut(s)	858
SfuI	TTCGAA	1 cut(s)	161
SinI	GGWCC	1 cut(s)	904
SmiMI	CAYNNNNRTG	1 cut(s)	489
Sse9I	AATT	9 cut(s)	25, 67, 119, 226, 353, 770, 840, 847, 913
SsiI	CCGC	4 cut(s)	957, 989, 1021, 1141
SspMI	CTAG	4 cut(s)	222, 566, 852, 1131
StyD4I	CCNGG	1 cut(s)	502
TaaI	ACNGT	2 cut(s)	35, 660
TaiI	ACGT	1 cut(s)	711
TaqI	TCGA	2 cut(s)	161, 268
TasI	AATT	9 cut(s)	25, 67, 119, 226, 353, 770, 840, 847, 913
TatI	WGTACW	3 cut(s)	456, 808, 1121
TauI	GCSGC	2 cut(s)	992, 1024
TfiI	GAWTC	1 cut(s)	10
Tru1I	TTAA	5 cut(s)	125, 377, 405, 636, 780
Tru9I	TTAA	5 cut(s)	125, 377, 405, 636, 780
TseFI	GTSAC	1 cut(s)	1042
TseI	GCWGC	4 cut(s)	182, 545, 1009, 1064
Tsp45I	GTSAC	1 cut(s)	1042
TspDTI	ATGAA	2 cut(s)	551, 654
TspGWI	ACGGA	2 cut(s)	191, 750
Van91I	CCANNNNNTGG	1 cut(s)	979
VpaK11BI	GGWCC	1 cut(s)	904
XapI	RAATTY	4 cut(s)	67, 226, 353, 913
XbaI	TCTAGA	1 cut(s)	851
XceI	RCATGY	1 cut(s)	463
XspI	CTAG	4 cut(s)	222, 566, 852, 1131
ZrmI	AGTACT	1 cut(s)	810

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.