Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0003976

Physical Location & Seq

Genomic Coordinates Forward (+)

55814209 .. 55818560

Gene Structure 4352 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG324600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGAGTTGGTTCTTGTGCTCTGGAAAATCAAGCACAAATGCAAAGAAGAAGAAGAAGCAGAGTCACAAGCCAGCAGATCAGATCTCATCACTTTCAGATCAAGTGAAGGCAAATTCGGCATTAAAGGAAGGGTCTAAGGGTAGCGGCTCTGATCACATTGCAGCACATACATTTACATTTCGTGAATTGGCAGCTGCAACAAAGAATTTTAGAGCAGATTGTTTTGTGGGTGAAGGAGGTTTTGGTCAAGTATATAGAGGGCACCTGGAGAGTTCTAATCAGGAAGTGGCAATTAAGAAACTTGATTCTAATGGACTTCAAGGGAACAGAGAATTCCTTGTCGAAGTATTAATGCTAAGCCTACTTCACCACCCGAATCTTGTCAACTTAATAGGCTACTGTGCTGATGGGGATCAGAGGCTTTTGGTATACGAGTACATGCCATTGGGATCCTTAGAAGACCATTTACATGATCTACCACCAGATAAAAAACAACTCGATTGGAATACCAGAATGAAAATAGCTGCTGGTGCTGCCAAGGGCTTGGAGTATTTGCATGACAAAGCTAACCCTCCTGTTATTTACCGTGATCTTAAGTGCTCAAACATTCTACTTGATGAAGGTTACCATCCCAAGCTCTCTGATTTTGGCTTGGCAAAGTTGGGTCCTGTAGGAGATAATACTCATGTTTCCACTAGGGTGATGGGAACCTATGGATATTGTGCCCCTGAGTATGCAATGACTGGTCAGCTCACATTGAAATCAGATGTATATAGCTTCGGGGTTGTTCTTTTGGAAATTATTACCGGAAGAAAGGCAATTGACAATTCAAGGGCTGCTGGGGAACACAATTTGGTTGCATGGGTAAGAAAATCACGCCTTCTACTCTTCACATATTTTTCTTTCCGAACTTGGTTGATATTGTTTGAATGCAACAGTCGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002218 GO:0002221 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0002757 GO:0002758 GO:0002764 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008150 GO:0008152 GO:0009605 GO:0009607 GO:0009617 GO:0009814 GO:0009816 GO:0009987 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0023052 GO:0031347 GO:0031349 GO:0036211 GO:0038023 GO:0042742 GO:0043170 GO:0043207 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0045088 GO:0045089 GO:0046777 GO:0048518 GO:0048583 GO:0048584 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050896 GO:0051704 GO:0051707 GO:0051716 GO:0060089 GO:0065007 GO:0071704 GO:0071944 GO:0080134 GO:0098542 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Pkinase Pkinase_Tyr

Protein Analysis

315

Amino Acids

35.07

Weight (kDa)

8.74

Isoelectric Point (pI)

24.0

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PK_Tyr_Ser-Thr	PF07714	75 - 275	3.2e-47	Protein tyrosine and serine/threonine kinase
Pkinase	PF00069	75 - 280	5.8e-45	Protein kinase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003976)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G02800
fragaria_vesca	FvH4_6g15040 FvH4_7g20570
malus_domestica	MD01G1114700.v1.1 MD04G1112600.v1.1 MD04G1113000.v1.1 MD07G1182700.v1.1 MD12G1129100.v1.1
prunus_persica	Prupe.2G221400_v2.0.a1 Prupe.2G221400_v2.0.a1 Prupe.6G244400_v2.0.a1 Prupe.6G244400_v2.0.a1
pyrus_communis	pycom01g14360 pycom04g10250 pycom04g10290 pycom12g12540
rosa_chinensis	RchiOBHm_Chr1g0364451 RchiOBHm_Chr3g0468211
rosa_laevigata	RLG00000024441 RLG00000027478
rosa_multiflora	Rmu_sc0001342.1_g000009 Rmu_sc0004524.1_g000006
rosa_roxburghii	Rroxscaffold_4G00291820 Rroxscaffold_4G00292260 Rroxscaffold_6G00412910
rosa_rugosa	Rorug01G0316100 Rorug03G0094200
rosa_samantha	Rh1AG324600 Rh1BG287300 Rh1DG318800 Rh3DG164000
rosa_wichuraiana	Rw1G028770 Rw3G013430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	261
AccI	GTMKAC	1 cut(s)	429
AciI	CCGC	1 cut(s)	144
AclWI	GGATC	3 cut(s)	420, 444, 457
AcsI	RAATTY	3 cut(s)	112, 205, 332
AfaI	GTAC	1 cut(s)	437
AflII	CTTAAG	1 cut(s)	593
AgsI	TTSAA	4 cut(s)	320, 760, 831, 929
AjnI	CCWGG	1 cut(s)	264
AjuI	GAANNNNNNNTTGG	2 cut(s)	225, 257
AleI	CACNNNNGTG	1 cut(s)	698
AluBI	AGCT	6 cut(s)	194, 524, 566, 637, 751, 777
AluI	AGCT	6 cut(s)	194, 524, 566, 637, 751, 777
Alw21I	GWGCWC	2 cut(s)	20, 602
AlwI	GGATC	3 cut(s)	420, 444, 457
ApeKI	GCWGC	6 cut(s)	161, 191, 194, 524, 533, 836
ApoI	RAATTY	3 cut(s)	112, 205, 332
AseI	ATTAAT	1 cut(s)	350
AspS9I	GGNCC	1 cut(s)	665
AsuHPI	GGTGA	3 cut(s)	242, 359, 712
AvaII	GGWCC	1 cut(s)	665
BaeGI	GKGCMC	2 cut(s)	264, 727
BamHI	GGATCC	1 cut(s)	449
BanI	GGYRCC	1 cut(s)	261
BarI	GAAGNNNNNNTAC	2 cut(s)	450, 482
BbsI	GAAGAC	1 cut(s)	465
Bbv12I	GWGCWC	2 cut(s)	20, 602
BbvI	GCAGC	6 cut(s)	173, 181, 203, 511, 520, 823
BccI	CCATC	3 cut(s)	401, 636, 697
BciT130I	CCWGG	1 cut(s)	266
BclI	TGATCA	1 cut(s)	151
BfaI	CTAG	1 cut(s)	696
BfmI	CTRYAG	1 cut(s)	669
BfrI	CTTAAG	1 cut(s)	593
BglII	AGATCT	1 cut(s)	81
BisI	GCNGC	7 cut(s)	145, 162, 192, 195, 525, 534, 837
BlpI	GCTNAGC	1 cut(s)	356
BlsI	GCNGC	7 cut(s)	146, 163, 193, 196, 526, 535, 838
Bme1390I	CCNGG	1 cut(s)	266
Bme18I	GGWCC	1 cut(s)	665
BmgT120I	GGNCC	1 cut(s)	665
BmiI	GGNNCC	4 cut(s)	263, 451, 666, 709
BmrFI	CCNGG	1 cut(s)	266
BpiI	GAAGAC	1 cut(s)	465
BpmI	CTGGAG	1 cut(s)	287
Bpu1102I	GCTNAGC	1 cut(s)	356
BsaBI	GATNNNNATC	1 cut(s)	411
BsaJI	CCNNGG	1 cut(s)	537
BsaWI	WCCGGW	1 cut(s)	806
Bse1I	ACTGG	1 cut(s)	748
Bse3DI	GCAATG	2 cut(s)	156, 744
Bse8I	GATNNNNATC	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	1 cut(s)	537
BseGI	GGATG	1 cut(s)	628
BseJI	GATNNNNATC	1 cut(s)	411
BseMI	GCAATG	2 cut(s)	156, 744
BseMII	CTCAG	1 cut(s)	720
BseNI	ACTGG	1 cut(s)	748
BseSI	GKGCMC	2 cut(s)	264, 727
BseXI	GCAGC	6 cut(s)	173, 181, 203, 511, 520, 823
BseYI	CCCAGC	1 cut(s)	839
BshNI	GGYRCC	1 cut(s)	261
BsiHKAI	GWGCWC	2 cut(s)	20, 602
BsiSI	CCGG	1 cut(s)	807
BsmI	GAATGC	1 cut(s)	935
Bsp1286I	GDGCHC	4 cut(s)	20, 264, 602, 727
Bsp143I	GATC	8 cut(s)	76, 81, 97, 151, 412, 449, 472, 589
Bsp1720I	GCTNAGC	1 cut(s)	356
BspACI	CCGC	1 cut(s)	144
BspCNI	CTCAG	1 cut(s)	721
BspLI	GGNNCC	4 cut(s)	263, 451, 666, 709
BspPI	GGATC	3 cut(s)	420, 444, 457
BspT107I	GGYRCC	1 cut(s)	261
BspTI	CTTAAG	1 cut(s)	593
BsrDI	GCAATG	2 cut(s)	156, 744
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	1 cut(s)	537
BssMI	GATC	8 cut(s)	76, 81, 97, 151, 412, 449, 472, 589
BssNAI	GTATAC	1 cut(s)	430
BssT1I	CCWWGG	1 cut(s)	537
Bst1107I	GTATAC	1 cut(s)	430
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	3 cut(s)	401, 587, 938
Bst6I	CTCTTC	1 cut(s)	893
BstAFI	CTTAAG	1 cut(s)	593
BstC8I	GCNNGC	1 cut(s)	72
BstDEI	CTNAG	4 cut(s)	135, 356, 454, 729
BstEII	GGTNACC	1 cut(s)	623
BstF5I	GGATG	1 cut(s)	628
BstKTI	GATC	8 cut(s)	79, 84, 100, 154, 415, 452, 475, 592
BstMBI	GATC	8 cut(s)	76, 81, 97, 151, 412, 449, 472, 589
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 530, 533
BstNI	CCWGG	1 cut(s)	266
BstNSI	RCATGY	1 cut(s)	442
BstPI	GGTNACC	1 cut(s)	623
BstSCI	CCNGG	1 cut(s)	264
BstSFI	CTRYAG	1 cut(s)	669
BstSLI	GKGCMC	2 cut(s)	264, 727
BstV1I	GCAGC	6 cut(s)	173, 181, 203, 511, 520, 823
BstV2I	GAAGAC	1 cut(s)	465
BstX2I	RGATCY	2 cut(s)	81, 449
BstXI	CCANNNNNNTGG	1 cut(s)	544
BstYI	RGATCY	2 cut(s)	81, 449
BstZ17I	GTATAC	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	628
Cac8I	GCNNGC	1 cut(s)	72
Cfr13I	GGNCC	1 cut(s)	665
Csp6I	GTAC	1 cut(s)	436
CviAII	CATG	5 cut(s)	439, 470, 557, 686, 861
CviQI	GTAC	1 cut(s)	436
DdeI	CTNAG	4 cut(s)	135, 356, 454, 729
DpnI	GATC	8 cut(s)	78, 83, 99, 153, 414, 451, 474, 591
DpnII	GATC	8 cut(s)	76, 81, 97, 151, 412, 449, 472, 589
Eam1104I	CTCTTC	1 cut(s)	893
EarI	CTCTTC	1 cut(s)	893
Eco130I	CCWWGG	1 cut(s)	537
Eco47I	GGWCC	1 cut(s)	665
Eco91I	GGTNACC	1 cut(s)	623
EcoO109I	RGGNCCY	1 cut(s)	665
EcoO65I	GGTNACC	1 cut(s)	623
EcoRI	GAATTC	1 cut(s)	332
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	537
ErhI	CCWWGG	1 cut(s)	537
FaeI	CATG	5 cut(s)	442, 473, 560, 689, 864
FatI	CATG	5 cut(s)	438, 469, 556, 685, 860
FbaI	TGATCA	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	429
Fnu4HI	GCNGC	7 cut(s)	145, 162, 192, 195, 525, 534, 837
FokI	GGATG	1 cut(s)	615
Fsp4HI	GCNGC	7 cut(s)	145, 162, 192, 195, 525, 534, 837
FspBI	CTAG	1 cut(s)	696
GluI	GCNGC	7 cut(s)	145, 162, 192, 195, 525, 534, 837
GsaI	CCCAGC	1 cut(s)	843
GsuI	CTGGAG	1 cut(s)	287
HapII	CCGG	1 cut(s)	807
Hin1II	CATG	5 cut(s)	442, 473, 560, 689, 864
HincII	GTYRAC	1 cut(s)	385
HindII	GTYRAC	1 cut(s)	385
HinfI	GANTC	3 cut(s)	61, 305, 376
HpaII	CCGG	1 cut(s)	807
HphI	GGTGA	3 cut(s)	242, 359, 712
Hpy166II	GTNNAC	2 cut(s)	385, 430
Hpy188I	TCNGA	7 cut(s)	81, 97, 151, 417, 643, 766, 908
Hpy188III	TCNNGA	3 cut(s)	21, 182, 281
Hpy8I	GTNNAC	2 cut(s)	385, 430
HpyAV	CCTTC	5 cut(s)	100, 122, 227, 614, 890
HpyCH4III	ACNGT	3 cut(s)	401, 587, 938
HpyCH4V	TGCA	7 cut(s)	41, 161, 197, 556, 737, 860, 933
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 530, 533
HpyF3I	CTNAG	4 cut(s)	135, 356, 454, 729
Hsp92II	CATG	5 cut(s)	442, 473, 560, 689, 864
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	8 cut(s)	76, 81, 97, 151, 412, 449, 472, 589
Lsp1109I	GCAGC	6 cut(s)	173, 181, 203, 511, 520, 823
MaeI	CTAG	1 cut(s)	696
MaeIII	GTNAC	2 cut(s)	62, 623
MalI	GATC	8 cut(s)	78, 83, 99, 153, 414, 451, 474, 591
MboI	GATC	8 cut(s)	76, 81, 97, 151, 412, 449, 472, 589
MboII	GAAGA	6 cut(s)	58, 61, 64, 470, 822, 880
MfeI	CAATTG	1 cut(s)	819
MflI	RGATCY	2 cut(s)	81, 449
MhlI	GDGCHC	4 cut(s)	20, 264, 602, 727
MluCI	AATT	9 cut(s)	112, 185, 205, 291, 332, 798, 819, 826, 850
MlyI	GAGTC	1 cut(s)	70
MnlI	CCTC	4 cut(s)	230, 251, 411, 582
MseI	TTAA	5 cut(s)	122, 294, 350, 389, 594
MslI	CAYNNNNRTG	2 cut(s)	468, 698
MspA1I	CMGCKG	1 cut(s)	194
MspCI	CTTAAG	1 cut(s)	593
MspI	CCGG	1 cut(s)	807
MspR9I	CCNGG	1 cut(s)	266
MunI	CAATTG	1 cut(s)	819
Mva1269I	GAATGC	1 cut(s)	935
MvaI	CCWGG	1 cut(s)	266
MwoI	GCNNNNNNNGC	3 cut(s)	116, 530, 533
NdeII	GATC	8 cut(s)	76, 81, 97, 151, 412, 449, 472, 589
NlaIII	CATG	5 cut(s)	442, 473, 560, 689, 864
NlaIV	GGNNCC	4 cut(s)	263, 451, 666, 709
NmuCI	GTSAC	1 cut(s)	62
NspI	RCATGY	1 cut(s)	442
OliI	CACNNNNGTG	1 cut(s)	698
PctI	GAATGC	1 cut(s)	935
PfeI	GAWTC	2 cut(s)	305, 376
PkrI	GCNGC	7 cut(s)	146, 163, 193, 196, 526, 535, 838
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
PpuMI	RGGWCCY	1 cut(s)	665
PshBI	ATTAAT	1 cut(s)	350
Psp5II	RGGWCCY	1 cut(s)	665
Psp6I	CCWGG	1 cut(s)	264
PspEI	GGTNACC	1 cut(s)	623
PspFI	CCCAGC	1 cut(s)	839
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	4 cut(s)	263, 451, 666, 709
PspPI	GGNCC	1 cut(s)	665
PspPPI	RGGWCCY	1 cut(s)	665
PsuI	RGATCY	2 cut(s)	81, 449
PvuII	CAGCTG	1 cut(s)	194
RsaI	GTAC	1 cut(s)	437
RsaNI	GTAC	1 cut(s)	436
RseI	CAYNNNNRTG	2 cut(s)	468, 698
SaqAI	TTAA	5 cut(s)	122, 294, 350, 389, 594
SatI	GCNGC	7 cut(s)	145, 162, 192, 195, 525, 534, 837
Sau3AI	GATC	8 cut(s)	76, 81, 97, 151, 412, 449, 472, 589
Sau96I	GGNCC	1 cut(s)	665
SchI	GAGTC	1 cut(s)	70
ScrFI	CCNGG	1 cut(s)	266
SduI	GDGCHC	4 cut(s)	20, 264, 602, 727
SfcI	CTRYAG	1 cut(s)	669
SinI	GGWCC	1 cut(s)	665
SmiMI	CAYNNNNRTG	2 cut(s)	468, 698
SmlI	CTYRAG	1 cut(s)	593
SmoI	CTYRAG	1 cut(s)	593
Sse9I	AATT	9 cut(s)	112, 185, 205, 291, 332, 798, 819, 826, 850
SsiI	CCGC	1 cut(s)	144
SspMI	CTAG	1 cut(s)	696
StyD4I	CCNGG	1 cut(s)	264
StyI	CCWWGG	1 cut(s)	537
TaaI	ACNGT	3 cut(s)	401, 587, 938
TaqI	TCGA	3 cut(s)	342, 498, 940
TasI	AATT	9 cut(s)	112, 185, 205, 291, 332, 798, 819, 826, 850
TatI	WGTACW	1 cut(s)	435
TauI	GCSGC	1 cut(s)	147
TfiI	GAWTC	2 cut(s)	305, 376
Tru1I	TTAA	5 cut(s)	122, 294, 350, 389, 594
Tru9I	TTAA	5 cut(s)	122, 294, 350, 389, 594
TseFI	GTSAC	1 cut(s)	62
TseI	GCWGC	6 cut(s)	161, 191, 194, 524, 533, 836
Tsp45I	GTSAC	1 cut(s)	62
TspDTI	ATGAA	2 cut(s)	530, 633
Vha464I	CTTAAG	1 cut(s)	593
VpaK11BI	GGWCC	1 cut(s)	665
VspI	ATTAAT	1 cut(s)	350
XapI	RAATTY	3 cut(s)	112, 205, 332
XceI	RCATGY	1 cut(s)	442
XcmI	CCANNNNNNNNNTGG	1 cut(s)	700
XmiI	GTMKAC	1 cut(s)	429
XspI	CTAG	1 cut(s)	696

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.