Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Forward (+)

29806495 .. 29810256

Gene Structure 3762 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1202100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1521 bp

ATGCCGGCCACCCACTTCGGCGTCAAGTACGCCGTACACATCATCACCTCCCACTTCGGCAATCTCGTCGCTAAAGTGTGTGAAAGTCTTCTCAAAAGAGGACCCCTAACCCTAAAAATCCTAATTGGGTTCACGGAGCTCACCCCTCAGCAAGTCAAGAACTCCCTCCTTATCCTAATCCAGCACAACAGCGTTCAGCCCTTCTCCGTAGACCAAGCAGAGGGTCCGAAATTCACTCAGTATGTAGCGCTGTTCGATAACATACTCCATCGAGGGAGGTTTTCCAAATTCATGACGGTTGTTTCGCAGGAGTTTGATAAAGAGTGTGAACTGGTTATTAAGGATTTGCTTGAGAATGGTAGGCTTACACTAAAACAAATAACTGAAGGAGAATATGCAGTTAAGGATGCTGTTGAGAAAAGCTTTCTTAAACTTGTGGACGCTCGTTTTGTGGAATGCTGCCCGGCTCCTGAAGTAGTTCTTGAAGAAGCAAGTAAAGACGCTCCAAAGAAGCGAGGTCCTAAGTTTTCTAAGATTGTTGAAGTACCAGAGACAATAGAACAACGTGTTGTAGCAGCAGCAGCACCTTCAGGAGCTATGAGATTTTCAATCCTGACAGATTCTGAAACCGATGCTCATGGGGGTAGTATGAGTACCGGGGACAAGCGCAAGCATGATGCTTTGGAGTTGGATGAAGAATTTGCTAATAATGAAATGGTTCTTTGGCGTGTTAATTTTGAGGAATTCATTCGCTGTCTAAGGCACAAGGTTTGCGTTGAGAATGTGAGAGCACGTCTGGATGATGGAGCTGCACTTGTCTTAAGGGCAATGCTTAAGTCAACTAGAACTGCAGAAAAGAAAGTAAAGACAGAAAATTCAGTTCCTGTATCATTTAGTACCATTTATGAGGAGGTGATAAACAGTGAAGCTGGTCGTAATTTGACATGTGATCGCGTCAAAGCTTCCCTCAGCCTGTTGTGCGATGAAAGGGATGTAGATGAGGATGAGTTGTATAGTGTTGACTTGAAGAAAATTCTTGAGCTGGCTCGGAATGATGAGGTGGAGTCAATTGTTTTGAAAAGATTTGGGAGAGATGCTTATAAAATATTTCGGCTACTGTCCACTTCAAGTCGTGCAATTGAGACGGATAAGATTTCAGATATGACACTCGTTGAAAAGAAGGAAACTCCCACAATTCTGTATAAGCTGTGGAAGGATGAGTACTTGCTTATGGAGAGATTAGCTGTGACGGGAGCCAGACAGGCACAATTCTTGGTGTGGAAGGTAAACAAGCCCATTGTATGGAAACATGTTTTAGACGAGATGTTCCACGCTGCGCTGAATCTGACTCTTCGACTGGCATACGAGGATGAACAAATTAAAGAGGTACAACTTCTCCCGGCGCACAAGCGAACGGGGCCATTAGGGAAACAATGGCAACGATTTCGAAATGTGGTTTATGTTATGCACGCAACCCTTTTGAAGATTGATGATGCTATCATGCTCTTCCATGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

507

Amino Acids

57.7

Weight (kDa)

6.53

Isoelectric Point (pI)

36.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_9	PF08221	10 - 66	5.9e-18	RNA polymerase III subunit RPC82 helix-turn-helix domain
RNA_pol_Rpc82	PF05645	140 - 315	3e-21	RNA polymerase III subunit RPC82
WHD_POLR3C	PF22536	354 - 419	3.9e-11	POLR3C, C-terminal winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1101
AccB7I	CCANNNNNTGG	1 cut(s)	1302
AccI	GTMKAC	1 cut(s)	210
AccII	CGCG	1 cut(s)	954
AcoI	YGGCCR	1 cut(s)	6
AcsI	RAATTY	6 cut(s)	230, 287, 698, 743, 874, 1032
AcuI	CTGAAG	3 cut(s)	405, 492, 573
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	7 cut(s)	29, 36, 546, 655, 898, 1223, 1389
AfeI	AGCGCT	1 cut(s)	249
AfiI	CCNNNNNNNGG	2 cut(s)	220, 1302
AflII	CTTAAG	2 cut(s)	820, 833
AflIII	ACRYGT	3 cut(s)	565, 944, 1309
AgsI	TTSAA	8 cut(s)	485, 542, 609, 1027, 1078, 1128, 1175, 1483
AjiI	CACGTC	1 cut(s)	794
AluBI	AGCT	9 cut(s)	139, 423, 596, 809, 929, 962, 1042, 1207, 1244
AluI	AGCT	9 cut(s)	139, 423, 596, 809, 929, 962, 1042, 1207, 1244
Alw21I	GWGCWC	2 cut(s)	141, 793
Alw26I	GTCTC	2 cut(s)	545, 1136
AlwNI	CAGNNNCTG	2 cut(s)	623, 884
Aor51HI	AGCGCT	1 cut(s)	249
AoxI	GGCC	2 cut(s)	6, 1418
ApeKI	GCWGC	6 cut(s)	459, 575, 578, 581, 809, 1334
ApoI	RAATTY	6 cut(s)	230, 287, 698, 743, 874, 1032
ArsI	GACNNNNNNTTYG	4 cut(s)	286, 318, 431, 463
Asp700I	GAANNNNTTC	4 cut(s)	87, 477, 717, 747
AspLEI	GCGC	4 cut(s)	250, 669, 1339, 1405
AspS9I	GGNCC	4 cut(s)	101, 224, 518, 1418
AsuC2I	CCSGG	3 cut(s)	464, 658, 1400
AsuHPI	GGTGA	3 cut(s)	37, 133, 925
AsuII	TTCGAA	1 cut(s)	1447
AvaII	GGWCC	3 cut(s)	101, 224, 518
BanII	GRGCYC	1 cut(s)	141
BarI	GAAGNNNNNNTAC	2 cut(s)	1205, 1237
BbsI	GAAGAC	1 cut(s)	80
Bbv12I	GWGCWC	2 cut(s)	141, 793
BbvCI	CCTCAGC	2 cut(s)	147, 968
BbvI	GCAGC	6 cut(s)	446, 587, 590, 593, 796, 1321
BccI	CCATC	2 cut(s)	276, 797
BceAI	ACGGC	1 cut(s)	17
BcgI	CGANNNNNNTGC	4 cut(s)	49, 83, 1427, 1461
BcnI	CCSGG	3 cut(s)	464, 658, 1400
BcoDI	GTCTC	2 cut(s)	545, 1136
BfaI	CTAG	1 cut(s)	843
BfmI	CTRYAG	1 cut(s)	849
BfoI	RGCGCY	1 cut(s)	251
BfrI	CTTAAG	2 cut(s)	820, 833
BglI	GCCNNNNNGGC	1 cut(s)	1262
BisI	GCNGC	6 cut(s)	460, 576, 579, 582, 810, 1335
BlsI	GCNGC	6 cut(s)	461, 577, 580, 583, 811, 1336
BmcAI	AGTACT	1 cut(s)	1223
Bme1390I	CCNGG	3 cut(s)	464, 658, 1400
Bme18I	GGWCC	3 cut(s)	101, 224, 518
BmgBI	CACGTC	1 cut(s)	794
BmgT120I	GGNCC	4 cut(s)	101, 224, 518, 1418
BmiI	GGNNCC	5 cut(s)	103, 225, 468, 1255, 1419
BmrFI	CCNGG	3 cut(s)	464, 658, 1400
BmsI	GCATC	5 cut(s)	397, 622, 667, 1084, 1483
BpiI	GAAGAC	1 cut(s)	80
Bpu10I	CCTNAGC	2 cut(s)	147, 968
Bpu14I	TTCGAA	1 cut(s)	1447
BpuEI	CTTGAG	2 cut(s)	371, 1058
BpuMI	CCSGG	3 cut(s)	464, 658, 1400
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	657
BsaXI	ACNNNNNCTCC	2 cut(s)	1380, 1410
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 1302
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	2 cut(s)	336, 1362
Bse3DI	GCAATG	1 cut(s)	834
BseDI	CCNNGG	1 cut(s)	657
BseGI	GGATG	7 cut(s)	412, 697, 805, 997, 1009, 1222, 1375
BseLI	CCNNNNNNNGG	2 cut(s)	220, 1302
BseMI	GCAATG	1 cut(s)	834
BseMII	CTCAG	3 cut(s)	161, 251, 982
BseNI	ACTGG	2 cut(s)	336, 1362
BseRI	GAGGAG	1 cut(s)	923
BseXI	GCAGC	6 cut(s)	446, 587, 590, 593, 796, 1321
BsgI	GTGCAG	1 cut(s)	795
Bsh1236I	CGCG	1 cut(s)	954
BshFI	GGCC	2 cut(s)	8, 1420
BsiHKAI	GWGCWC	2 cut(s)	141, 793
BsiSI	CCGG	4 cut(s)	5, 464, 657, 1400
BslFI	GGGAC	1 cut(s)	674
BslI	CCNNNNNNNGG	2 cut(s)	220, 1302
BsmAI	GTCTC	2 cut(s)	545, 1136
BsmBI	CGTCTC	1 cut(s)	1136
BsmFI	GGGAC	1 cut(s)	674
BsmI	GAATGC	1 cut(s)	461
BsnI	GGCC	2 cut(s)	8, 1420
Bsp119I	TTCGAA	1 cut(s)	1447
Bsp1286I	GDGCHC	2 cut(s)	141, 793
Bsp143I	GATC	1 cut(s)	949
BspANI	GGCC	2 cut(s)	8, 1420
BspCNI	CTCAG	3 cut(s)	160, 250, 981
BspFNI	CGCG	1 cut(s)	954
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	5 cut(s)	103, 225, 468, 1255, 1419
BspMAI	CTGCAG	1 cut(s)	853
BspQI	GCTCTTC	1 cut(s)	1511
BspT104I	TTCGAA	1 cut(s)	1447
BspTI	CTTAAG	2 cut(s)	820, 833
BsrDI	GCAATG	1 cut(s)	834
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	2 cut(s)	336, 1362
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	657
BssMI	GATC	1 cut(s)	949
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	3 cut(s)	298, 923, 1119
Bst6I	CTCTTC	2 cut(s)	1356, 1511
BstACI	GRCGYC	1 cut(s)	21
BstAFI	CTTAAG	2 cut(s)	820, 833
BstBI	TTCGAA	1 cut(s)	1447
BstC8I	GCNNGC	4 cut(s)	6, 671, 1044, 1470
BstDEI	CTNAG	6 cut(s)	147, 237, 522, 531, 758, 968
BstF5I	GGATG	7 cut(s)	412, 697, 805, 997, 1009, 1222, 1375
BstFNI	CGCG	1 cut(s)	954
BstH2I	RGCGCY	1 cut(s)	251
BstHHI	GCGC	4 cut(s)	250, 669, 1339, 1405
BstKTI	GATC	1 cut(s)	952
BstMAI	GTCTC	2 cut(s)	545, 1136
BstMBI	GATC	1 cut(s)	949
BstMWI	GCNNNNNNNGC	4 cut(s)	581, 978, 1262, 1417
BstNSI	RCATGY	2 cut(s)	948, 1313
BstSCI	CCNGG	3 cut(s)	462, 656, 1398
BstSFI	CTRYAG	1 cut(s)	849
BstUI	CGCG	1 cut(s)	954
BstV1I	GCAGC	6 cut(s)	446, 587, 590, 593, 796, 1321
BstV2I	GAAGAC	1 cut(s)	80
BsuRI	GGCC	2 cut(s)	8, 1420
BtgZI	GCGATG	1 cut(s)	996
BtrI	CACGTC	1 cut(s)	794
BtsCI	GGATG	7 cut(s)	412, 697, 805, 997, 1009, 1222, 1375
BtsIMutI	CAGTG	1 cut(s)	928
Cac8I	GCNNGC	4 cut(s)	6, 671, 1044, 1470
CaiI	CAGNNNCTG	2 cut(s)	623, 884
CciI	TCATGA	1 cut(s)	291
CfoI	GCGC	4 cut(s)	250, 669, 1339, 1405
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	4 cut(s)	101, 224, 518, 1418
CseI	GACGC	4 cut(s)	10, 449, 509, 943
Csp6I	GTAC	7 cut(s)	28, 35, 545, 654, 897, 1222, 1388
CviAII	CATG	7 cut(s)	292, 638, 674, 945, 1310, 1501, 1511
CviQI	GTAC	7 cut(s)	28, 35, 545, 654, 897, 1222, 1388
DdeI	CTNAG	6 cut(s)	147, 237, 522, 531, 758, 968
DpnI	GATC	1 cut(s)	951
DpnII	GATC	1 cut(s)	949
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	2 cut(s)	1356, 1511
EarI	CTCTTC	2 cut(s)	1356, 1511
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	1 cut(s)	141
Eco47I	GGWCC	3 cut(s)	101, 224, 518
Eco47III	AGCGCT	1 cut(s)	249
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	3 cut(s)	405, 492, 573
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	2 cut(s)	101, 518
EcoRI	GAATTC	1 cut(s)	743
EcoT38I	GRGCYC	1 cut(s)	141
Esp3I	CGTCTC	1 cut(s)	1136
FaeI	CATG	7 cut(s)	295, 641, 677, 948, 1313, 1504, 1514
FalI	AAGNNNNNCTT	2 cut(s)	465, 497
FaqI	GGGAC	1 cut(s)	674
FatI	CATG	7 cut(s)	291, 637, 673, 944, 1309, 1500, 1510
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	6 cut(s)	460, 576, 579, 582, 810, 1335
FokI	GGATG	7 cut(s)	419, 704, 812, 1004, 1016, 1229, 1382
FriOI	GRGCYC	1 cut(s)	141
Fsp4HI	GCNGC	6 cut(s)	460, 576, 579, 582, 810, 1335
FspBI	CTAG	1 cut(s)	843
GlaI	GCGC	4 cut(s)	249, 668, 1338, 1404
GluI	GCNGC	6 cut(s)	460, 576, 579, 582, 810, 1335
HaeII	RGCGCY	1 cut(s)	251
HaeIII	GGCC	2 cut(s)	8, 1420
HapII	CCGG	4 cut(s)	5, 464, 657, 1400
HgaI	GACGC	4 cut(s)	10, 449, 509, 943
HhaI	GCGC	4 cut(s)	250, 669, 1339, 1405
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	7 cut(s)	295, 641, 677, 948, 1313, 1504, 1514
Hin6I	GCGC	4 cut(s)	248, 667, 1337, 1403
HinP1I	GCGC	4 cut(s)	248, 667, 1337, 1403
HincII	GTYRAC	2 cut(s)	840, 1021
HindII	GTYRAC	2 cut(s)	840, 1021
HindIII	AAGCTT	2 cut(s)	421, 960
HinfI	GANTC	4 cut(s)	620, 1064, 1342, 1348
HpaII	CCGG	4 cut(s)	5, 464, 657, 1400
HphI	GGTGA	3 cut(s)	37, 133, 925
Hpy166II	GTNNAC	9 cut(s)	37, 132, 211, 329, 439, 840, 1021, 1122, 1288
Hpy188I	TCNGA	6 cut(s)	228, 625, 1050, 1159, 1347, 1520
Hpy188III	TCNNGA	8 cut(s)	157, 292, 470, 482, 591, 613, 797, 1037
Hpy8I	GTNNAC	9 cut(s)	37, 132, 211, 329, 439, 840, 1021, 1122, 1288
Hpy99I	CGWCG	1 cut(s)	71
HpyAV	CCTTC	6 cut(s)	211, 380, 597, 1174, 1207, 1276
HpyCH4III	ACNGT	3 cut(s)	298, 923, 1119
HpyCH4IV	ACGT	2 cut(s)	565, 793
HpyCH4V	TGCA	5 cut(s)	398, 812, 851, 1136, 1468
HpyF10VI	GCNNNNNNNGC	4 cut(s)	581, 978, 1262, 1417
HpyF3I	CTNAG	6 cut(s)	147, 237, 522, 531, 758, 968
HpySE526I	ACGT	2 cut(s)	565, 793
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	7 cut(s)	295, 641, 677, 948, 1313, 1504, 1514
HspAI	GCGC	4 cut(s)	248, 667, 1337, 1403
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	949
LguI	GCTCTTC	1 cut(s)	1511
LmnI	GCTCC	6 cut(s)	136, 472, 508, 593, 806, 1253
Lsp1109I	GCAGC	6 cut(s)	446, 587, 590, 593, 796, 1321
LweI	GCATC	5 cut(s)	397, 622, 667, 1084, 1483
MaeI	CTAG	1 cut(s)	843
MaeII	ACGT	2 cut(s)	565, 793
MaeIII	GTNAC	1 cut(s)	1246
MalI	GATC	1 cut(s)	951
MboI	GATC	1 cut(s)	949
MboII	GAAGA	7 cut(s)	80, 497, 707, 1039, 1343, 1495, 1498
MfeI	CAATTG	2 cut(s)	1068, 1137
MhlI	GDGCHC	2 cut(s)	141, 793
MlyI	GAGTC	2 cut(s)	1073, 1342
MmeI	TCCRAC	1 cut(s)	669
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	4 cut(s)	87, 477, 717, 747
MseI	TTAA	7 cut(s)	339, 402, 429, 732, 821, 834, 1380
MspCI	CTTAAG	2 cut(s)	820, 833
MspI	CCGG	4 cut(s)	5, 464, 657, 1400
MspR9I	CCNGG	3 cut(s)	464, 658, 1400
MunI	CAATTG	2 cut(s)	1068, 1137
Mva1269I	GAATGC	1 cut(s)	461
MvnI	CGCG	1 cut(s)	954
MwoI	GCNNNNNNNGC	4 cut(s)	581, 978, 1262, 1417
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	3 cut(s)	464, 658, 1400
NdeII	GATC	1 cut(s)	949
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	7 cut(s)	295, 641, 677, 948, 1313, 1504, 1514
NlaIV	GGNNCC	5 cut(s)	103, 225, 468, 1255, 1419
NmuCI	GTSAC	1 cut(s)	1246
NspI	RCATGY	2 cut(s)	948, 1313
NspV	TTCGAA	1 cut(s)	1447
PagI	TCATGA	1 cut(s)	291
PciI	ACATGT	2 cut(s)	944, 1309
PciSI	GCTCTTC	1 cut(s)	1511
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	461
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	4 cut(s)	87, 477, 717, 747
PfeI	GAWTC	2 cut(s)	620, 1342
PflMI	CCANNNNNTGG	1 cut(s)	1302
PkrI	GCNGC	6 cut(s)	461, 577, 580, 583, 811, 1336
PleI	GAGTC	2 cut(s)	1072, 1342
PpsI	GAGTC	2 cut(s)	1072, 1342
PpuMI	RGGWCCY	2 cut(s)	101, 518
PscI	ACATGT	2 cut(s)	944, 1309
PsiI	TTATAA	1 cut(s)	1101
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	2 cut(s)	101, 518
PspN4I	GGNNCC	5 cut(s)	103, 225, 468, 1255, 1419
PspPI	GGNCC	4 cut(s)	101, 224, 518, 1418
PspPPI	RGGWCCY	2 cut(s)	101, 518
PstI	CTGCAG	1 cut(s)	853
PstNI	CAGNNNCTG	2 cut(s)	623, 884
RsaI	GTAC	7 cut(s)	29, 36, 546, 655, 898, 1223, 1389
RsaNI	GTAC	7 cut(s)	28, 35, 545, 654, 897, 1222, 1388
SacI	GAGCTC	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	1511
SaqAI	TTAA	7 cut(s)	339, 402, 429, 732, 821, 834, 1380
SatI	GCNGC	6 cut(s)	460, 576, 579, 582, 810, 1335
Sau3AI	GATC	1 cut(s)	949
Sau96I	GGNCC	4 cut(s)	101, 224, 518, 1418
ScaI	AGTACT	1 cut(s)	1223
SchI	GAGTC	2 cut(s)	1073, 1342
ScrFI	CCNGG	3 cut(s)	464, 658, 1400
SduI	GDGCHC	2 cut(s)	141, 793
SfaNI	GCATC	5 cut(s)	397, 622, 667, 1084, 1483
SfcI	CTRYAG	1 cut(s)	849
SfuI	TTCGAA	1 cut(s)	1447
SinI	GGWCC	3 cut(s)	101, 224, 518
SmlI	CTYRAG	4 cut(s)	350, 820, 833, 1037
SmoI	CTYRAG	4 cut(s)	350, 820, 833, 1037
SspI	AATATT	1 cut(s)	1107
SspMI	CTAG	1 cut(s)	843
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	3 cut(s)	462, 656, 1398
TaaI	ACNGT	3 cut(s)	298, 923, 1119
TaiI	ACGT	2 cut(s)	568, 796
TaqI	TCGA	4 cut(s)	255, 271, 1354, 1447
TatI	WGTACW	1 cut(s)	1221
TfiI	GAWTC	2 cut(s)	620, 1342
Tru1I	TTAA	7 cut(s)	339, 402, 429, 732, 821, 834, 1380
Tru9I	TTAA	7 cut(s)	339, 402, 429, 732, 821, 834, 1380
TscAI	CASTG	1 cut(s)	928
TseFI	GTSAC	1 cut(s)	1246
TseI	GCWGC	6 cut(s)	459, 575, 578, 581, 809, 1334
Tsp45I	GTSAC	1 cut(s)	1246
TspDTI	ATGAA	6 cut(s)	280, 708, 726, 736, 999, 1386
TspGWI	ACGGA	3 cut(s)	149, 196, 1160
TspRI	CASTG	1 cut(s)	928
Van91I	CCANNNNNTGG	1 cut(s)	1302
Vha464I	CTTAAG	2 cut(s)	820, 833
VpaK11BI	GGWCC	3 cut(s)	101, 224, 518
XapI	RAATTY	6 cut(s)	230, 287, 698, 743, 874, 1032
XceI	RCATGY	2 cut(s)	948, 1313
XmiI	GTMKAC	1 cut(s)	210
XmnI	GAANNNNTTC	4 cut(s)	87, 477, 717, 747
XspI	CTAG	1 cut(s)	843
ZrmI	AGTACT	1 cut(s)	1223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.