Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0041364.1

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Forward (+)

63 .. 1400

Gene Structure 1338 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0041364.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

atggctcaagtatcagagaccatagaacaacgtgttctcgcagcagcaaggcctatggaagcaataagattcttaattatgacagatgcagaaactgatgatccgtcacaaaaaagtgataataattcttctagtatgagtgttggggagaagcgcaagtttgatgatttggatattggtgaagaacatgggtctaatgataaggaagtgattctttggcgtgctaattttgagcagttcattcattgtctaaggcataaggcttgtgttgagaatgttagagcacaacatgatgatgaagctgcagttgagttaggagaaacgctgaaggcaactagaactgcagagaccaaagtgaaatcagattattcaggtaagctggaagtttggattagtatatgctgtgtcgttcatacacagttaactacctatgcttta

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

146

Amino Acids

16.44

Weight (kDa)

5.0

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	347
AflIII	ACRYGT	1 cut(s)	31
AluBI	AGCT	2 cut(s)	302, 379
AluI	AGCT	2 cut(s)	302, 379
Alw21I	GWGCWC	1 cut(s)	286
Alw26I	GTCTC	2 cut(s)	11, 341
AlwI	GGATC	1 cut(s)	95
AlwNI	CAGNNNCTG	1 cut(s)	95
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	3 cut(s)	41, 44, 302
Asp700I	GAANNNNTTC	1 cut(s)	210
AspLEI	GCGC	1 cut(s)	156
AsuHPI	GGTGA	1 cut(s)	191
Bbv12I	GWGCWC	1 cut(s)	286
BbvI	GCAGC	3 cut(s)	53, 56, 289
BcoDI	GTCTC	2 cut(s)	11, 341
BfaI	CTAG	2 cut(s)	132, 336
BfmI	CTRYAG	2 cut(s)	303, 342
BisI	GCNGC	3 cut(s)	42, 45, 303
BlsI	GCNGC	3 cut(s)	43, 46, 304
BmsI	GCATC	1 cut(s)	76
BsaI	GGTCTC	2 cut(s)	11, 341
BseXI	GCAGC	3 cut(s)	53, 56, 289
BshFI	GGCC	1 cut(s)	52
BsiHKAI	GWGCWC	1 cut(s)	286
BsmAI	GTCTC	2 cut(s)	11, 341
BsnI	GGCC	1 cut(s)	52
Bso31I	GGTCTC	2 cut(s)	11, 341
Bsp1286I	GDGCHC	1 cut(s)	286
Bsp143I	GATC	1 cut(s)	100
BspANI	GGCC	1 cut(s)	52
BspMAI	CTGCAG	2 cut(s)	307, 346
BspPI	GGATC	1 cut(s)	95
BspTNI	GGTCTC	2 cut(s)	11, 341
BssMI	GATC	1 cut(s)	100
Bst4CI	ACNGT	1 cut(s)	420
BstC8I	GCNNGC	1 cut(s)	222
BstDEI	CTNAG	1 cut(s)	251
BstHHI	GCGC	1 cut(s)	156
BstKTI	GATC	1 cut(s)	103
BstMAI	GTCTC	2 cut(s)	11, 341
BstMBI	GATC	1 cut(s)	100
BstSFI	CTRYAG	2 cut(s)	303, 342
BstV1I	GCAGC	3 cut(s)	53, 56, 289
BsuRI	GGCC	1 cut(s)	52
Cac8I	GCNNGC	1 cut(s)	222
CaiI	CAGNNNCTG	1 cut(s)	95
CfoI	GCGC	1 cut(s)	156
CviAII	CATG	2 cut(s)	188, 290
CviJI	RGCY	5 cut(s)	5, 52, 263, 302, 379
CviKI_1	RGCY	5 cut(s)	5, 52, 263, 302, 379
DdeI	CTNAG	1 cut(s)	251
DpnI	GATC	1 cut(s)	102
DpnII	GATC	1 cut(s)	100
Eco147I	AGGCCT	1 cut(s)	52
Eco31I	GGTCTC	2 cut(s)	11, 341
Eco57I	CTGAAG	1 cut(s)	347
FaeI	CATG	2 cut(s)	191, 293
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FatI	CATG	2 cut(s)	187, 289
Fnu4HI	GCNGC	3 cut(s)	42, 45, 303
Fsp4HI	GCNGC	3 cut(s)	42, 45, 303
FspBI	CTAG	2 cut(s)	132, 336
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	3 cut(s)	42, 45, 303
HaeIII	GGCC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	191, 293
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HincII	GTYRAC	1 cut(s)	423
HindII	GTYRAC	1 cut(s)	423
HinfI	GANTC	2 cut(s)	69, 211
HpaI	GTTAAC	1 cut(s)	423
HphI	GGTGA	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	423
Hpy188I	TCNGA	2 cut(s)	16, 364
Hpy8I	GTNNAC	1 cut(s)	423
HpyAV	CCTTC	1 cut(s)	322
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	1 cut(s)	31
HpyCH4V	TGCA	3 cut(s)	89, 305, 344
HpyF3I	CTNAG	1 cut(s)	251
HpySE526I	ACGT	1 cut(s)	31
Hsp92II	CATG	2 cut(s)	191, 293
HspAI	GCGC	1 cut(s)	154
KspAI	GTTAAC	1 cut(s)	423
Kzo9I	GATC	1 cut(s)	100
LpnPI	CCDG	2 cut(s)	357, 365
Lsp1109I	GCAGC	3 cut(s)	53, 56, 289
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	132, 336
MaeII	ACGT	1 cut(s)	31
MaeIII	GTNAC	1 cut(s)	105
MalI	GATC	1 cut(s)	102
MboI	GATC	1 cut(s)	100
MboII	GAAGA	2 cut(s)	120, 194
MhlI	GDGCHC	1 cut(s)	286
MluCI	AATT	3 cut(s)	75, 124, 226
MroXI	GAANNNNTTC	1 cut(s)	210
MseI	TTAA	2 cut(s)	74, 422
MslI	CAYNNNNRTG	1 cut(s)	294
NdeII	GATC	1 cut(s)	100
NlaIII	CATG	2 cut(s)	191, 293
NmuCI	GTSAC	1 cut(s)	105
PceI	AGGCCT	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	210
PfeI	GAWTC	2 cut(s)	69, 211
PkrI	GCNGC	3 cut(s)	43, 46, 304
PstI	CTGCAG	2 cut(s)	307, 346
PstNI	CAGNNNCTG	1 cut(s)	95
RseI	CAYNNNNRTG	1 cut(s)	294
SaqAI	TTAA	2 cut(s)	74, 422
SatI	GCNGC	3 cut(s)	42, 45, 303
Sau3AI	GATC	1 cut(s)	100
SduI	GDGCHC	1 cut(s)	286
SetI	ASST	5 cut(s)	34, 304, 376, 381, 431
SfaNI	GCATC	1 cut(s)	76
SfcI	CTRYAG	2 cut(s)	303, 342
SmiMI	CAYNNNNRTG	1 cut(s)	294
SmlI	CTYRAG	1 cut(s)	6
SmoI	CTYRAG	1 cut(s)	6
Sse9I	AATT	3 cut(s)	75, 124, 226
SseBI	AGGCCT	1 cut(s)	52
SspMI	CTAG	2 cut(s)	132, 336
StuI	AGGCCT	1 cut(s)	52
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	1 cut(s)	34
TasI	AATT	3 cut(s)	75, 124, 226
TfiI	GAWTC	2 cut(s)	69, 211
Tru1I	TTAA	2 cut(s)	74, 422
Tru9I	TTAA	2 cut(s)	74, 422
TseFI	GTSAC	1 cut(s)	105
TseI	GCWGC	3 cut(s)	41, 44, 302
Tsp45I	GTSAC	1 cut(s)	105
TspDTI	ATGAA	4 cut(s)	229, 233, 312, 401
TspGWI	ACGGA	1 cut(s)	93
XmnI	GAANNNNTTC	1 cut(s)	210
XspI	CTAG	2 cut(s)	132, 336

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.