Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Forward (+)

33797643 .. 33801772

Gene Structure 4130 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1271200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1527 bp

ATGCCGGCGACCCACTTCGGCGTCAAGTACGCCGTACACATCATCACCTCCCACTTCGGCAATCTTGTCGCTAAAGTGTGTGAAAATCTTCTGAAACGAGGACCCCTAACACTGAGACTCCTAATTGGGTTCACGGAGCTCACCCCTCAGCAAGTCAAGAATTCCCTCCTCATCCTAATCCAGCACAATTGCGTTCAGCCCTTCTCCGTCGACCAAGCAGAGGGCCCGAAAGTCACTCAGTATGTAGCACTGATCGATAACATACTCCATCGATGGAGGTTTGCCAAATTCATGACGGTTGTTTCGCAGGAATTCGATAAAGAGTGTGAACTAATTATTAAGGATTTGCTTGAGAATGGTAGGCTTACTTTAAAACAAATAACTGAAGGAGAATATGCAGTTAAGGATACTGTTGAGAAAAGCTTTCTTAAACTTGTGAACGCTCATTTTGTGGAACGCTGCCCGGCTCCTGAAGCAGTTCTCGAAGAAGCAAGTAAAGATGCTCCAAAGAAGCGAGGTCCTAAGTCTTCCAAGATTGTTGAAGTACCAGAGACTATAGAACAACGTGTTGTAGCAGTAGCAGCACCTTCAGCAGCTATGAGATTTTCTATTTTGACAGATTCTGAAACCGATGCTCATGGGGGTAGTTCTTCTAGTATGAGTACCGGGGACAAGCGAAAGCATGATGCTTTGGAGTTGGATGAATTTGCTAATAATGAAGTGGTTCTTTGGCGTGCTAATTTTGAGGAATTCATTCGCTGCCTAAGGCACAAGGCTTGCGTTGAGAATGTGAGAGCACGGCTGGATGACGGAGCTGCACTTGTCTTAAGAGCAATGCTTAAGTCAACTAGAACTGCAGAGAAGAAAGTAAAGACCGAAAATTCAGTTCCTGTATCATTCAGTACTATTTATGAGGAGGTGATAAACAGCGAAGCTGGTCGTAATTTGACATGTGATCGCGTCAAAGCTTCCCTCAGCTTGTTGTGCGACGAAAGAGATGTCGATGAGGATGAGTCGTATAGTGTTGACTTGAAGAAAATTCTTGAGCTGGCTCAGAATGATGAGGTGGAGTCAATTGTTTTGAAAAGATATGGGAGAGATGCTTATAAAATGTTTAGGCTACTGTCGACTTCAAGTCGTGCACTTGAGACGGATAAGATTTCAGATATGACACTTGTTGAAAAGAAGGAAACTCCCACAATTCTATATAAGCTGTGGAATGATGAGTACTTGCTTATGGAGAGATTAGCTGTGACAGGAGCCAGACAGGCACAGTTCTTGGTGTGGAAGGTTGACAGGCCCATTGTTTGGAAACATGTTTTAGATGAGATGTTCCACGCAGCGCTGAATCTGAGTCTTCGACTGGCGTACGAGGACGAACAGATTAAAGAGGTACAGCTTCTCCCAGCGCACAAGCGAACGGGGCCATTAGGGAAACAATGGCAAAGATTTAGAAATGTGGTTTATGTTATGCACGCATCCCAACTGAAGATTGATGATGCCATCATGCTCTTCCATGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

509

Amino Acids

57.86

Weight (kDa)

6.43

Isoelectric Point (pI)

37.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_9	PF08221	10 - 66	1.8e-20	RNA polymerase III subunit RPC82 helix-turn-helix domain
RNA_pol_Rpc82	PF05645	140 - 347	3.7e-26	RNA polymerase III subunit RPC82
WHD_POLR3C	PF22536	356 - 421	3.9e-10	POLR3C, C-terminal winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1107
AccB7I	CCANNNNNTGG	1 cut(s)	1308
AccI	GTMKAC	2 cut(s)	210, 1127
AccII	CGCG	1 cut(s)	960
AcsI	RAATTY	7 cut(s)	160, 287, 311, 704, 749, 880, 1038
AcuI	CTGAAG	4 cut(s)	405, 492, 573, 1508
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	8 cut(s)	29, 36, 546, 664, 904, 1229, 1370, 1395
AfeI	AGCGCT	1 cut(s)	1344
AfiI	CCNNNNNNNGG	2 cut(s)	220, 1308
AflII	CTTAAG	2 cut(s)	826, 839
AflIII	ACRYGT	3 cut(s)	565, 950, 1315
AgsI	TTSAA	5 cut(s)	542, 1033, 1084, 1134, 1181
AhdI	GACNNNNNGTC	1 cut(s)	1134
Alw21I	GWGCWC	3 cut(s)	141, 799, 1144
Alw26I	GTCTC	3 cut(s)	109, 545, 1142
Alw44I	GTGCAC	1 cut(s)	1140
AlwNI	CAGNNNCTG	2 cut(s)	623, 890
Aor51HI	AGCGCT	1 cut(s)	1344
AoxI	GGCC	3 cut(s)	223, 1298, 1424
ApaI	GGGCCC	1 cut(s)	227
ApaLI	GTGCAC	1 cut(s)	1140
ApeKI	GCWGC	6 cut(s)	459, 581, 593, 759, 815, 1340
ApoI	RAATTY	7 cut(s)	160, 287, 311, 704, 749, 880, 1038
ArsI	GACNNNNNNTTYG	4 cut(s)	286, 318, 984, 1016
Asp700I	GAANNNNTTC	4 cut(s)	87, 477, 723, 753
AspLEI	GCGC	2 cut(s)	1345, 1411
AspS9I	GGNCC	6 cut(s)	101, 223, 224, 518, 1299, 1424
AsuC2I	CCSGG	2 cut(s)	464, 667
AsuHPI	GGTGA	3 cut(s)	37, 133, 931
AvaII	GGWCC	2 cut(s)	101, 518
AxyI	CCTNAGG	1 cut(s)	764
BaeGI	GKGCMC	2 cut(s)	227, 1144
BanII	GRGCYC	2 cut(s)	141, 227
BbsI	GAAGAC	2 cut(s)	519, 1349
Bbv12I	GWGCWC	3 cut(s)	141, 799, 1144
BbvCI	CCTCAGC	2 cut(s)	147, 974
BbvI	GCAGC	6 cut(s)	446, 593, 605, 746, 802, 1352
BccI	CCATC	3 cut(s)	267, 276, 1511
BceAI	ACGGC	2 cut(s)	17, 815
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciVI	GTATCC	1 cut(s)	400
BcnI	CCSGG	2 cut(s)	464, 667
BcoDI	GTCTC	3 cut(s)	109, 545, 1142
BfaI	CTAG	2 cut(s)	654, 849
BfmI	CTRYAG	2 cut(s)	555, 855
BfoI	RGCGCY	1 cut(s)	1346
BfrI	CTTAAG	2 cut(s)	826, 839
BfuI	GTATCC	1 cut(s)	400
BglI	GCCNNNNNGGC	1 cut(s)	1268
BisI	GCNGC	6 cut(s)	460, 582, 594, 760, 816, 1341
BlsI	GCNGC	6 cut(s)	461, 583, 595, 761, 817, 1342
BmcAI	AGTACT	2 cut(s)	904, 1229
Bme1390I	CCNGG	2 cut(s)	464, 667
Bme18I	GGWCC	2 cut(s)	101, 518
BmeRI	GACNNNNNGTC	1 cut(s)	1134
BmgT120I	GGNCC	6 cut(s)	101, 223, 224, 518, 1299, 1424
BmiI	GGNNCC	5 cut(s)	103, 225, 468, 1261, 1425
BmrFI	CCNGG	2 cut(s)	464, 667
BmsI	GCATC	6 cut(s)	490, 622, 676, 1090, 1487, 1489
BpiI	GAAGAC	2 cut(s)	519, 1349
Bpu10I	CCTNAGC	2 cut(s)	147, 974
BpuEI	CTTGAG	3 cut(s)	371, 1064, 1166
BpuMI	CCSGG	2 cut(s)	464, 667
Bsa29I	ATCGAT	2 cut(s)	255, 271
BsaHI	GRCGYC	1 cut(s)	21
BsaJI	CCNNGG	1 cut(s)	666
BsaXI	ACNNNNNCTCC	4 cut(s)	102, 132, 1386, 1416
Bsc4I	CCNNNNNNNGG	2 cut(s)	220, 1308
Bse118I	RCCGGY	1 cut(s)	4
Bse1I	ACTGG	1 cut(s)	1368
Bse21I	CCTNAGG	1 cut(s)	764
Bse3DI	GCAATG	1 cut(s)	840
BseCI	ATCGAT	2 cut(s)	255, 271
BseDI	CCNNGG	1 cut(s)	666
BseGI	GGATG	5 cut(s)	171, 706, 811, 1015, 1478
BseLI	CCNNNNNNNGG	2 cut(s)	220, 1308
BseMI	GCAATG	1 cut(s)	840
BseMII	CTCAG	6 cut(s)	104, 161, 251, 988, 1067, 1343
BseNI	ACTGG	1 cut(s)	1368
BseRI	GAGGAG	2 cut(s)	158, 929
BseSI	GKGCMC	2 cut(s)	227, 1144
BseXI	GCAGC	6 cut(s)	446, 593, 605, 746, 802, 1352
BseYI	CCCAGC	1 cut(s)	1405
BsgI	GTGCAG	1 cut(s)	801
Bsh1236I	CGCG	1 cut(s)	960
BshFI	GGCC	3 cut(s)	225, 1300, 1426
BshVI	ATCGAT	2 cut(s)	255, 271
BsiHKAI	GWGCWC	3 cut(s)	141, 799, 1144
BsiSI	CCGG	3 cut(s)	5, 464, 666
BsiWI	CGTACG	1 cut(s)	1368
BslFI	GGGAC	1 cut(s)	683
BslI	CCNNNNNNNGG	2 cut(s)	220, 1308
BsmAI	GTCTC	3 cut(s)	109, 545, 1142
BsmBI	CGTCTC	1 cut(s)	1142
BsmFI	GGGAC	1 cut(s)	683
BsnI	GGCC	3 cut(s)	225, 1300, 1426
Bsp120I	GGGCCC	1 cut(s)	223
Bsp1286I	GDGCHC	4 cut(s)	141, 227, 799, 1144
Bsp143I	GATC	2 cut(s)	252, 955
BspANI	GGCC	3 cut(s)	225, 1300, 1426
BspCNI	CTCAG	6 cut(s)	105, 160, 250, 987, 1066, 1344
BspDI	ATCGAT	2 cut(s)	255, 271
BspFNI	CGCG	1 cut(s)	960
BspHI	TCATGA	1 cut(s)	291
BspLI	GGNNCC	5 cut(s)	103, 225, 468, 1261, 1425
BspMAI	CTGCAG	1 cut(s)	859
BspQI	GCTCTTC	1 cut(s)	1517
BspTI	CTTAAG	2 cut(s)	826, 839
BsrDI	GCAATG	1 cut(s)	840
BsrFI	RCCGGY	1 cut(s)	4
BsrI	ACTGG	1 cut(s)	1368
BssAI	RCCGGY	1 cut(s)	4
BssECI	CCNNGG	1 cut(s)	666
BssMI	GATC	2 cut(s)	252, 955
BssNI	GRCGYC	1 cut(s)	21
Bst4CI	ACNGT	4 cut(s)	298, 412, 1125, 1275
Bst6I	CTCTTC	1 cut(s)	1517
BstACI	GRCGYC	1 cut(s)	21
BstAFI	CTTAAG	2 cut(s)	826, 839
BstC8I	GCNNGC	5 cut(s)	6, 735, 778, 1050, 1476
BstDEI	CTNAG	8 cut(s)	113, 147, 237, 522, 764, 974, 1053, 1352
BstF5I	GGATG	5 cut(s)	171, 706, 811, 1015, 1478
BstFNI	CGCG	1 cut(s)	960
BstH2I	RGCGCY	1 cut(s)	1346
BstHHI	GCGC	2 cut(s)	1345, 1411
BstKTI	GATC	2 cut(s)	255, 958
BstMAI	GTCTC	3 cut(s)	109, 545, 1142
BstMBI	GATC	2 cut(s)	252, 955
BstMWI	GCNNNNNNNGC	6 cut(s)	473, 581, 590, 984, 1268, 1423
BstNSI	RCATGY	2 cut(s)	954, 1319
BstSCI	CCNGG	2 cut(s)	462, 665
BstSFI	CTRYAG	2 cut(s)	555, 855
BstSLI	GKGCMC	2 cut(s)	227, 1144
BstUI	CGCG	1 cut(s)	960
BstV1I	GCAGC	6 cut(s)	446, 593, 605, 746, 802, 1352
BstV2I	GAAGAC	2 cut(s)	519, 1349
Bsu15I	ATCGAT	2 cut(s)	255, 271
Bsu36I	CCTNAGG	1 cut(s)	764
BsuI	GTATCC	1 cut(s)	400
BsuRI	GGCC	3 cut(s)	225, 1300, 1426
BsuTUI	ATCGAT	2 cut(s)	255, 271
BtsCI	GGATG	5 cut(s)	171, 706, 811, 1015, 1478
BtsIMutI	CAGTG	2 cut(s)	110, 248
Cac8I	GCNNGC	5 cut(s)	6, 735, 778, 1050, 1476
CaiI	CAGNNNCTG	2 cut(s)	623, 890
CciI	TCATGA	1 cut(s)	291
CfoI	GCGC	2 cut(s)	1345, 1411
Cfr10I	RCCGGY	1 cut(s)	4
Cfr13I	GGNCC	6 cut(s)	101, 223, 224, 518, 1299, 1424
ClaI	ATCGAT	2 cut(s)	255, 271
CseI	GACGC	2 cut(s)	10, 949
Csp6I	GTAC	8 cut(s)	28, 35, 545, 663, 903, 1228, 1369, 1394
CviAII	CATG	7 cut(s)	292, 638, 683, 951, 1316, 1507, 1517
CviQI	GTAC	8 cut(s)	28, 35, 545, 663, 903, 1228, 1369, 1394
DdeI	CTNAG	8 cut(s)	113, 147, 237, 522, 764, 974, 1053, 1352
DpnI	GATC	2 cut(s)	254, 957
DpnII	GATC	2 cut(s)	252, 955
DraI	TTTAAA	1 cut(s)	372
DriI	GACNNNNNGTC	1 cut(s)	1134
Eam1104I	CTCTTC	1 cut(s)	1517
Eam1105I	GACNNNNNGTC	1 cut(s)	1134
EarI	CTCTTC	1 cut(s)	1517
Ecl136II	GAGCTC	1 cut(s)	139
Eco24I	GRGCYC	2 cut(s)	141, 227
Eco47I	GGWCC	2 cut(s)	101, 518
Eco47III	AGCGCT	1 cut(s)	1344
Eco53kI	GAGCTC	1 cut(s)	139
Eco57I	CTGAAG	4 cut(s)	405, 492, 573, 1508
Eco81I	CCTNAGG	1 cut(s)	764
EcoICRI	GAGCTC	1 cut(s)	139
EcoO109I	RGGNCCY	3 cut(s)	101, 223, 518
EcoRI	GAATTC	3 cut(s)	160, 311, 749
EcoT38I	GRGCYC	2 cut(s)	141, 227
Esp3I	CGTCTC	1 cut(s)	1142
FaeI	CATG	7 cut(s)	295, 641, 686, 954, 1319, 1510, 1520
FalI	AAGNNNNNCTT	2 cut(s)	711, 743
FaqI	GGGAC	1 cut(s)	683
FatI	CATG	7 cut(s)	291, 637, 682, 950, 1315, 1506, 1516
FblI	GTMKAC	2 cut(s)	210, 1127
Fnu4HI	GCNGC	6 cut(s)	460, 582, 594, 760, 816, 1341
FokI	GGATG	5 cut(s)	158, 713, 818, 1022, 1465
FriOI	GRGCYC	2 cut(s)	141, 227
Fsp4HI	GCNGC	6 cut(s)	460, 582, 594, 760, 816, 1341
FspBI	CTAG	2 cut(s)	654, 849
GlaI	GCGC	2 cut(s)	1344, 1410
GluI	GCNGC	6 cut(s)	460, 582, 594, 760, 816, 1341
GsaI	CCCAGC	1 cut(s)	1409
HaeII	RGCGCY	1 cut(s)	1346
HaeIII	GGCC	3 cut(s)	225, 1300, 1426
HapII	CCGG	3 cut(s)	5, 464, 666
HgaI	GACGC	2 cut(s)	10, 949
HhaI	GCGC	2 cut(s)	1345, 1411
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	7 cut(s)	295, 641, 686, 954, 1319, 1510, 1520
Hin6I	GCGC	2 cut(s)	1343, 1409
HinP1I	GCGC	2 cut(s)	1343, 1409
HincII	GTYRAC	5 cut(s)	211, 846, 1027, 1128, 1294
HindII	GTYRAC	5 cut(s)	211, 846, 1027, 1128, 1294
HindIII	AAGCTT	2 cut(s)	421, 966
HinfI	GANTC	6 cut(s)	117, 620, 1013, 1070, 1348, 1354
HpaII	CCGG	3 cut(s)	5, 464, 666
HphI	GGTGA	3 cut(s)	37, 133, 931
Hpy188I	TCNGA	6 cut(s)	93, 625, 1056, 1165, 1353, 1526
Hpy188III	TCNNGA	5 cut(s)	157, 292, 470, 482, 1043
Hpy99I	CGWCG	2 cut(s)	212, 992
HpyAV	CCTTC	5 cut(s)	211, 380, 597, 1180, 1282
HpyCH4III	ACNGT	4 cut(s)	298, 412, 1125, 1275
HpyCH4IV	ACGT	1 cut(s)	565
HpyCH4V	TGCA	5 cut(s)	398, 818, 857, 1142, 1474
HpyF10VI	GCNNNNNNNGC	6 cut(s)	473, 581, 590, 984, 1268, 1423
HpyF3I	CTNAG	8 cut(s)	113, 147, 237, 522, 764, 974, 1053, 1352
HpySE526I	ACGT	1 cut(s)	565
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	7 cut(s)	295, 641, 686, 954, 1319, 1510, 1520
HspAI	GCGC	2 cut(s)	1343, 1409
KroI	GCCGGC	1 cut(s)	4
KroNI	GCCGGC	1 cut(s)	6
Kzo9I	GATC	2 cut(s)	252, 955
LguI	GCTCTTC	1 cut(s)	1517
LmnI	GCTCC	5 cut(s)	136, 472, 508, 812, 1259
Lsp1109I	GCAGC	6 cut(s)	446, 593, 605, 746, 802, 1352
LweI	GCATC	6 cut(s)	490, 622, 676, 1090, 1487, 1489
MaeI	CTAG	2 cut(s)	654, 849
MaeII	ACGT	1 cut(s)	565
MaeIII	GTNAC	2 cut(s)	232, 1252
MalI	GATC	2 cut(s)	254, 957
MboI	GATC	2 cut(s)	252, 955
MboII	GAAGA	9 cut(s)	80, 497, 519, 642, 874, 1045, 1349, 1501, 1504
MfeI	CAATTG	2 cut(s)	187, 1074
MhlI	GDGCHC	4 cut(s)	141, 227, 799, 1144
MlyI	GAGTC	4 cut(s)	111, 1022, 1079, 1363
MmeI	TCCRAC	1 cut(s)	678
MroNI	GCCGGC	1 cut(s)	4
MroXI	GAANNNNTTC	4 cut(s)	87, 477, 723, 753
MseI	TTAA	7 cut(s)	339, 371, 402, 429, 827, 840, 1386
MspCI	CTTAAG	2 cut(s)	826, 839
MspI	CCGG	3 cut(s)	5, 464, 666
MspR9I	CCNGG	2 cut(s)	464, 667
MunI	CAATTG	2 cut(s)	187, 1074
MvnI	CGCG	1 cut(s)	960
MwoI	GCNNNNNNNGC	6 cut(s)	473, 581, 590, 984, 1268, 1423
NaeI	GCCGGC	1 cut(s)	6
NciI	CCSGG	2 cut(s)	464, 667
NdeII	GATC	2 cut(s)	252, 955
NgoMIV	GCCGGC	1 cut(s)	4
NlaIII	CATG	7 cut(s)	295, 641, 686, 954, 1319, 1510, 1520
NlaIV	GGNNCC	5 cut(s)	103, 225, 468, 1261, 1425
NmuCI	GTSAC	2 cut(s)	232, 1252
NspI	RCATGY	2 cut(s)	954, 1319
PagI	TCATGA	1 cut(s)	291
PciI	ACATGT	2 cut(s)	950, 1315
PciSI	GCTCTTC	1 cut(s)	1517
PdiI	GCCGGC	1 cut(s)	6
PdmI	GAANNNNTTC	4 cut(s)	87, 477, 723, 753
PfeI	GAWTC	2 cut(s)	620, 1348
Pfl23II	CGTACG	1 cut(s)	1368
PflMI	CCANNNNNTGG	1 cut(s)	1308
PkrI	GCNGC	6 cut(s)	461, 583, 595, 761, 817, 1342
PleI	GAGTC	4 cut(s)	111, 1021, 1078, 1362
PpsI	GAGTC	4 cut(s)	111, 1021, 1078, 1362
PpuMI	RGGWCCY	2 cut(s)	101, 518
PscI	ACATGT	2 cut(s)	950, 1315
PsiI	TTATAA	1 cut(s)	1107
Psp124BI	GAGCTC	1 cut(s)	141
Psp5II	RGGWCCY	2 cut(s)	101, 518
PspFI	CCCAGC	1 cut(s)	1405
PspLI	CGTACG	1 cut(s)	1368
PspN4I	GGNNCC	5 cut(s)	103, 225, 468, 1261, 1425
PspOMI	GGGCCC	1 cut(s)	223
PspPI	GGNCC	6 cut(s)	101, 223, 224, 518, 1299, 1424
PspPPI	RGGWCCY	2 cut(s)	101, 518
PstI	CTGCAG	1 cut(s)	859
PstNI	CAGNNNCTG	2 cut(s)	623, 890
RsaI	GTAC	8 cut(s)	29, 36, 546, 664, 904, 1229, 1370, 1395
RsaNI	GTAC	8 cut(s)	28, 35, 545, 663, 903, 1228, 1369, 1394
SacI	GAGCTC	1 cut(s)	141
SalI	GTCGAC	2 cut(s)	209, 1126
SapI	GCTCTTC	1 cut(s)	1517
SaqAI	TTAA	7 cut(s)	339, 371, 402, 429, 827, 840, 1386
SatI	GCNGC	6 cut(s)	460, 582, 594, 760, 816, 1341
Sau3AI	GATC	2 cut(s)	252, 955
Sau96I	GGNCC	6 cut(s)	101, 223, 224, 518, 1299, 1424
ScaI	AGTACT	2 cut(s)	904, 1229
SchI	GAGTC	4 cut(s)	111, 1022, 1079, 1363
ScrFI	CCNGG	2 cut(s)	464, 667
SduI	GDGCHC	4 cut(s)	141, 227, 799, 1144
SfaNI	GCATC	6 cut(s)	490, 622, 676, 1090, 1487, 1489
SfcI	CTRYAG	2 cut(s)	555, 855
SinI	GGWCC	2 cut(s)	101, 518
SmlI	CTYRAG	5 cut(s)	350, 826, 839, 1043, 1145
SmoI	CTYRAG	5 cut(s)	350, 826, 839, 1043, 1145
SspMI	CTAG	2 cut(s)	654, 849
SstI	GAGCTC	1 cut(s)	141
StyD4I	CCNGG	2 cut(s)	462, 665
TaaI	ACNGT	4 cut(s)	298, 412, 1125, 1275
TaiI	ACGT	1 cut(s)	568
TaqI	TCGA	8 cut(s)	210, 255, 271, 315, 483, 1002, 1127, 1360
TaqII	GACCGA	1 cut(s)	890
TatI	WGTACW	2 cut(s)	902, 1227
TfiI	GAWTC	2 cut(s)	620, 1348
Tru1I	TTAA	7 cut(s)	339, 371, 402, 429, 827, 840, 1386
Tru9I	TTAA	7 cut(s)	339, 371, 402, 429, 827, 840, 1386
TscAI	CASTG	2 cut(s)	117, 255
TseFI	GTSAC	2 cut(s)	232, 1252
TseI	GCWGC	6 cut(s)	459, 581, 593, 759, 815, 1340
Tsp45I	GTSAC	2 cut(s)	232, 1252
TspDTI	ATGAA	4 cut(s)	280, 717, 732, 742
TspGWI	ACGGA	4 cut(s)	149, 196, 825, 1166
TspRI	CASTG	2 cut(s)	117, 255
Van91I	CCANNNNNTGG	1 cut(s)	1308
Vha464I	CTTAAG	2 cut(s)	826, 839
VneI	GTGCAC	1 cut(s)	1140
VpaK11BI	GGWCC	2 cut(s)	101, 518
XapI	RAATTY	7 cut(s)	160, 287, 311, 704, 749, 880, 1038
XceI	RCATGY	2 cut(s)	954, 1319
XmiI	GTMKAC	2 cut(s)	210, 1127
XmnI	GAANNNNTTC	4 cut(s)	87, 477, 723, 753
XspI	CTAG	2 cut(s)	654, 849
ZrmI	AGTACT	2 cut(s)	904, 1229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.