Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Forward (+)

64721427 .. 64726791

Gene Structure 5365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G036950.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1593 bp

ATGACGGTGACTAACAGCGGCATCCAATACGCCGTTCAGATCATCACCAAACACTTCGGCAACCTCGTCGCTAAAGTTTGCGAAACCCTTCTGAAATCCGGACCGTTAAACCTGGGCGCTCTGATCCGATCGACGGCGCTCACTCCCCAGCAAGTCAAGAACTCTCTCCTGATTCTGGTCCAGCACAATTGCGTCCAGCCCTTTACCCAAGAGTCCAAGGCTGGGCTTAAAGTTCAGTACATGGCGGTGTACGATAACATACTCCATCGACTTAGGTTTGCCAAATTTCTGGCGGTTGTGGCCCAGCAGCTTGATGATGATTGCAAACAACTTCTGGCTGGTTTACTTGAACATGGTAGACTTACACAGCAACAGTTAATGGACAGAGCCAATCAGAAATCCAAATCAAATAGCATTCAGAATGCTGCTCAAGATAACTTTATTAGACTTGTGACTGCTCGTTTTGTTGAACGCTGCCCGGCCCCTGAACCACTTCTTGAAGAAGCACCTGAACAAGAAGGTCCAAAGAAGCCACGCTCTAAATCTGCTAAGATGGCTCAAGTATCAGAGACCATAGAACAACGTGTTCTAGCAGCAGCAAGGCCTATGGAAGCAATACGATTTTTAATTACGACAGATCCAGAAACTGATGATCCATCACAAAAAAGTGAGAATAATTCCTCTAGTATGAGTGTTGGGGAGAAGCGCAAGTTTGATGATTTGGATATTGGTGAACATGGGTCCAATGATAAGGAAGTGATTCTTTGGCGTGCTAATTTTGAGCAATTCATTCGTTGTCTAAGGCATAAGGCTTGTGTTGAGAATGTTAGAGCACGACATGATGATGGAGCTGCAGTTGTGTTAAAAGCTGTGCTGAAGGCAACTAGAATGCAGGAGACCAAAGTGAAAACAGATTATTCAGTTCCTTTAAAGATGGGTGCCATTTATAATGAGGTGATAGATAGTGCAGCCGGCCGTAATTTGACCAAAGTTTCTGTCAAAGCTTCCCTCCACTTGTTGTGCGGTGCAGATCCTGTAAGAGGAGGATATGAGGGTGAGGGTGAGGGTGAGGGTGAGGATGAGGATGTGCCATATAGCGTTGACTTGAAGAAAATTATAGAACTGCTTCAGAATGATGAGGTGGAGTCGATTGTTTTGAAAAGATATGGACAGGATGCTTGTAGAATATTTAGGTTACTGACAAGGCAGTCAAACACTGGTCAGTTTTTTGAGACAGATAAGATATCAGTCGATGCCCTTGTTGACAAAAAGGAAACACCTAAGATTCTCTATAAGCTCTGGAAGGATGACTACGTTCATATGGAGAAATTATCATTGACAACAGCTAAACAGTCACAAGTCATGGTGTGGAAAGTGCACAAGTCCATTGTTTGGGAACATGTTTTAGATGAGATGTACCATGCGGCGTACAATTTGGTTAAGCGATATGATCATGAGAGGGAAGAAAATAAGGAGGAGAAACGTGTCGGTGAATTAGAGAAAAAAGCCAACCGGTTTCTAGGTGTCAGGAAAATTATGGCATTATCGCTTGTGAAGCTTGATGATGCTCTCATGCTCTTCCATGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

530

Amino Acids

60.04

Weight (kDa)

7.61

Isoelectric Point (pI)

36.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_9	PF08221	10 - 66	2.4e-18	RNA polymerase III subunit RPC82 helix-turn-helix domain
RNA_pol_Rpc82	PF05645	145 - 309	5e-18	RNA polymerase III subunit RPC82
WHD_POLR3C	PF22536	381 - 449	4e-11	POLR3C, C-terminal winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
AasI	GACNNNNNNGTC	1 cut(s)	1207
AccB1I	GGYRCC	1 cut(s)	938
AccB7I	CCANNNNNTGG	1 cut(s)	1392
AccI	GTMKAC	1 cut(s)	358
AccIII	TCCGGA	1 cut(s)	98
AciI	CCGC	5 cut(s)	18, 245, 293, 1023, 1424
AclWI	GGATC	4 cut(s)	118, 632, 647, 1025
AcoI	YGGCCR	1 cut(s)	973
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	2 cut(s)	896, 1112
AfaI	GTAC	4 cut(s)	239, 251, 1418, 1430
AfiI	CCNNNNNNNGG	5 cut(s)	133, 175, 222, 1040, 1392
AflIII	ACRYGT	3 cut(s)	583, 1399, 1483
AgeI	ACCGGT	1 cut(s)	1512
AgsI	TTSAA	5 cut(s)	350, 470, 500, 1108, 1159
AjnI	CCWGG	1 cut(s)	111
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	7 cut(s)	310, 851, 869, 1004, 1297, 1346, 1558
AluI	AGCT	7 cut(s)	310, 851, 869, 1004, 1297, 1346, 1558
Alw21I	GWGCWC	2 cut(s)	835, 1380
Alw26I	GTCTC	3 cut(s)	563, 890, 1226
Alw44I	GTGCAC	1 cut(s)	1376
AlwI	GGATC	4 cut(s)	118, 632, 647, 1025
AlwNI	CAGNNNCTG	2 cut(s)	647, 1034
Aor13HI	TCCGGA	1 cut(s)	98
AoxI	GGCC	4 cut(s)	300, 480, 602, 973
ApaLI	GTGCAC	1 cut(s)	1376
ApeKI	GCWGC	7 cut(s)	307, 425, 474, 593, 596, 851, 968
ApoI	RAATTY	1 cut(s)	284
ArsI	GACNNNNNNTTYG	2 cut(s)	981, 1013
AsiGI	ACCGGT	1 cut(s)	1512
Asp700I	GAANNNNTTC	4 cut(s)	87, 492, 759, 1125
AspLEI	GCGC	3 cut(s)	119, 139, 708
AspS9I	GGNCC	6 cut(s)	101, 178, 301, 481, 521, 741
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	9 cut(s)	19, 37, 743, 967, 1067, 1073, 1079, 1085, 1502
AvaII	GGWCC	4 cut(s)	101, 178, 521, 741
BaeGI	GKGCMC	1 cut(s)	1380
BanI	GGYRCC	1 cut(s)	938
BarI	GAAGNNNNNNTAC	2 cut(s)	1295, 1327
Bbv12I	GWGCWC	2 cut(s)	835, 1380
BbvI	GCAGC	7 cut(s)	319, 412, 461, 605, 608, 838, 980
BccI	CCATC	5 cut(s)	273, 547, 664, 839, 928
BceAI	ACGGC	3 cut(s)	17, 150, 960
BcgI	CGANNNNNNTGC	4 cut(s)	49, 83, 773, 807
BciT130I	CCWGG	1 cut(s)	113
BclI	TGATCA	1 cut(s)	1450
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	3 cut(s)	563, 890, 1226
BfaI	CTAG	4 cut(s)	590, 684, 885, 1520
BfmI	CTRYAG	1 cut(s)	852
BfoI	RGCGCY	2 cut(s)	120, 140
BisI	GCNGC	9 cut(s)	19, 308, 426, 475, 594, 597, 852, 969, 1425
BlsI	GCNGC	9 cut(s)	20, 309, 427, 476, 595, 598, 853, 970, 1426
Bme1390I	CCNGG	2 cut(s)	113, 479
Bme18I	GGWCC	4 cut(s)	101, 178, 521, 741
BmgT120I	GGNCC	6 cut(s)	101, 178, 301, 481, 521, 741
BmiI	GGNNCC	3 cut(s)	483, 742, 940
BmrFI	CCNGG	2 cut(s)	113, 479
BmsI	GCATC	4 cut(s)	30, 1165, 1243, 1555
BpuEI	CTTGAG	2 cut(s)	414, 543
BpuMI	CCSGG	1 cut(s)	479
BsaI	GGTCTC	2 cut(s)	563, 890
BsaJI	CCNNGG	2 cut(s)	112, 216
BsaWI	WCCGGW	2 cut(s)	98, 1512
BsaXI	ACNNNNNCTCC	2 cut(s)	840, 870
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 175, 222, 1040, 1392
Bse118I	RCCGGY	2 cut(s)	971, 1512
Bse1I	ACTGG	1 cut(s)	1222
BseAI	TCCGGA	1 cut(s)	98
BseBI	CCWGG	1 cut(s)	113
BseDI	CCNNGG	2 cut(s)	112, 216
BseGI	GGATG	5 cut(s)	21, 1084, 1090, 1180, 1312
BseLI	CCNNNNNNNGG	5 cut(s)	133, 175, 222, 1040, 1392
BseNI	ACTGG	1 cut(s)	1222
BseRI	GAGGAG	2 cut(s)	1056, 1490
BseSI	GKGCMC	1 cut(s)	1380
BseX3I	CGGCCG	1 cut(s)	973
BseXI	GCAGC	7 cut(s)	319, 412, 461, 605, 608, 838, 980
BseYI	CCCAGC	3 cut(s)	147, 221, 303
BsgI	GTGCAG	2 cut(s)	987, 1047
Bsh1285I	CGRYCG	2 cut(s)	131, 976
BshFI	GGCC	4 cut(s)	302, 482, 604, 975
BshNI	GGYRCC	1 cut(s)	938
BshTI	ACCGGT	1 cut(s)	1512
BsiEI	CGRYCG	2 cut(s)	131, 976
BsiHKAI	GWGCWC	2 cut(s)	835, 1380
BsiSI	CCGG	4 cut(s)	99, 479, 972, 1513
BslI	CCNNNNNNNGG	5 cut(s)	133, 175, 222, 1040, 1392
BsmAI	GTCTC	3 cut(s)	563, 890, 1226
BsmI	GAATGC	3 cut(s)	414, 427, 894
BsnI	GGCC	4 cut(s)	302, 482, 604, 975
Bso31I	GGTCTC	2 cut(s)	563, 890
Bsp1286I	GDGCHC	2 cut(s)	835, 1380
Bsp13I	TCCGGA	1 cut(s)	98
Bsp143I	GATC	7 cut(s)	39, 123, 128, 637, 652, 1030, 1450
BspACI	CCGC	5 cut(s)	18, 245, 293, 1023, 1424
BspANI	GGCC	4 cut(s)	302, 482, 604, 975
BspEI	TCCGGA	1 cut(s)	98
BspHI	TCATGA	1 cut(s)	1453
BspLI	GGNNCC	3 cut(s)	483, 742, 940
BspMAI	CTGCAG	1 cut(s)	856
BspPI	GGATC	4 cut(s)	118, 632, 647, 1025
BspQI	GCTCTTC	1 cut(s)	1583
BspT107I	GGYRCC	1 cut(s)	938
BspTNI	GGTCTC	2 cut(s)	563, 890
BsrFI	RCCGGY	2 cut(s)	971, 1512
BsrI	ACTGG	1 cut(s)	1222
BssAI	RCCGGY	2 cut(s)	971, 1512
BssECI	CCNNGG	2 cut(s)	112, 216
BssMI	GATC	7 cut(s)	39, 123, 128, 637, 652, 1030, 1450
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	113
Bst4CI	ACNGT	4 cut(s)	7, 105, 375, 1353
Bst6I	CTCTTC	1 cut(s)	1583
BstC8I	GCNNGC	2 cut(s)	771, 973
BstDEI	CTNAG	4 cut(s)	272, 549, 800, 1281
BstENI	CCTNNNNNAGG	1 cut(s)	1038
BstF5I	GGATG	5 cut(s)	21, 1084, 1090, 1180, 1312
BstH2I	RGCGCY	2 cut(s)	120, 140
BstHHI	GCGC	3 cut(s)	119, 139, 708
BstKTI	GATC	7 cut(s)	42, 126, 131, 640, 655, 1033, 1453
BstMAI	GTCTC	3 cut(s)	563, 890, 1226
BstMBI	GATC	7 cut(s)	39, 123, 128, 637, 652, 1030, 1450
BstMCI	CGRYCG	2 cut(s)	131, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 554, 1555
BstNI	CCWGG	1 cut(s)	113
BstNSI	RCATGY	1 cut(s)	1403
BstSCI	CCNGG	2 cut(s)	111, 477
BstSFI	CTRYAG	1 cut(s)	852
BstSLI	GKGCMC	1 cut(s)	1380
BstV1I	GCAGC	7 cut(s)	319, 412, 461, 605, 608, 838, 980
BstX2I	RGATCY	2 cut(s)	637, 1030
BstXI	CCANNNNNNTGG	1 cut(s)	289
BstYI	RGATCY	2 cut(s)	637, 1030
BstZI	CGGCCG	1 cut(s)	973
BsuRI	GGCC	4 cut(s)	302, 482, 604, 975
BtsCI	GGATG	5 cut(s)	21, 1084, 1090, 1180, 1312
BtsIMutI	CAGTG	1 cut(s)	1215
Cac8I	GCNNGC	2 cut(s)	771, 973
CaiI	CAGNNNCTG	2 cut(s)	647, 1034
CciI	TCATGA	1 cut(s)	1453
CfoI	GCGC	3 cut(s)	119, 139, 708
Cfr10I	RCCGGY	2 cut(s)	971, 1512
Cfr13I	GGNCC	6 cut(s)	101, 178, 301, 481, 521, 741
CpoI	CGGWCCG	1 cut(s)	101
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	4 cut(s)	238, 250, 1417, 1429
CspAI	ACCGGT	1 cut(s)	1512
CspI	CGGWCCG	1 cut(s)	101
CviQI	GTAC	4 cut(s)	238, 250, 1417, 1429
DdeI	CTNAG	4 cut(s)	272, 549, 800, 1281
DpnI	GATC	7 cut(s)	41, 125, 130, 639, 654, 1032, 1452
DpnII	GATC	7 cut(s)	39, 123, 128, 637, 652, 1030, 1450
DraI	TTTAAA	1 cut(s)	930
DrdI	GACNNNNNNGTC	1 cut(s)	1207
DseDI	GACNNNNNNGTC	1 cut(s)	1207
EaeI	YGGCCR	1 cut(s)	973
EagI	CGGCCG	1 cut(s)	973
Eam1104I	CTCTTC	1 cut(s)	1583
EarI	CTCTTC	1 cut(s)	1583
EclXI	CGGCCG	1 cut(s)	973
Eco130I	CCWWGG	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	604
Eco31I	GGTCTC	2 cut(s)	563, 890
Eco32I	GATATC	1 cut(s)	1245
Eco47I	GGWCC	4 cut(s)	101, 178, 521, 741
Eco52I	CGGCCG	1 cut(s)	973
Eco57I	CTGAAG	2 cut(s)	896, 1112
EcoNI	CCTNNNNNAGG	1 cut(s)	1038
EcoRII	CCWGG	1 cut(s)	111
EcoRV	GATATC	1 cut(s)	1245
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FalI	AAGNNNNNCTT	2 cut(s)	747, 779
FauNDI	CATATG	1 cut(s)	1320
FbaI	TGATCA	1 cut(s)	1450
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	9 cut(s)	19, 308, 426, 475, 594, 597, 852, 969, 1425
FokI	GGATG	5 cut(s)	8, 1091, 1097, 1187, 1319
Fsp4HI	GCNGC	9 cut(s)	19, 308, 426, 475, 594, 597, 852, 969, 1425
FspBI	CTAG	4 cut(s)	590, 684, 885, 1520
GlaI	GCGC	3 cut(s)	118, 138, 707
GluI	GCNGC	9 cut(s)	19, 308, 426, 475, 594, 597, 852, 969, 1425
GsaI	CCCAGC	3 cut(s)	151, 225, 307
HaeII	RGCGCY	2 cut(s)	120, 140
HaeIII	GGCC	4 cut(s)	302, 482, 604, 975
HapII	CCGG	4 cut(s)	99, 479, 972, 1513
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	3 cut(s)	119, 139, 708
Hin6I	GCGC	3 cut(s)	117, 137, 706
HinP1I	GCGC	3 cut(s)	117, 137, 706
HincII	GTYRAC	2 cut(s)	1102, 1264
HindII	GTYRAC	2 cut(s)	1102, 1264
HindIII	AAGCTT	2 cut(s)	1002, 1556
HinfI	GANTC	5 cut(s)	172, 212, 760, 1145, 1285
HpaII	CCGG	4 cut(s)	99, 479, 972, 1513
HphI	GGTGA	9 cut(s)	19, 37, 743, 967, 1067, 1073, 1079, 1085, 1502
Hpy166II	GTNNAC	7 cut(s)	250, 344, 359, 734, 1102, 1264, 1378
Hpy188I	TCNGA	9 cut(s)	39, 93, 123, 128, 396, 420, 568, 1131, 1592
Hpy188III	TCNNGA	9 cut(s)	99, 157, 169, 431, 497, 641, 1300, 1454, 1528
Hpy8I	GTNNAC	7 cut(s)	250, 344, 359, 734, 1102, 1264, 1378
Hpy99I	CGWCG	2 cut(s)	71, 136
HpyAV	CCTTC	4 cut(s)	98, 512, 871, 1297
HpyCH4III	ACNGT	4 cut(s)	7, 105, 375, 1353
HpyCH4IV	ACGT	3 cut(s)	583, 1314, 1483
HpyCH4V	TGCA	6 cut(s)	324, 854, 892, 968, 1028, 1378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 554, 1555
HpyF3I	CTNAG	4 cut(s)	272, 549, 800, 1281
HpySE526I	ACGT	3 cut(s)	583, 1314, 1483
HspAI	GCGC	3 cut(s)	117, 137, 706
Kpn2I	TCCGGA	1 cut(s)	98
KroI	GCCGGC	1 cut(s)	971
KroNI	GCCGGC	1 cut(s)	973
Ksp22I	TGATCA	1 cut(s)	1450
Kzo9I	GATC	7 cut(s)	39, 123, 128, 637, 652, 1030, 1450
LguI	GCTCTTC	1 cut(s)	1583
LmnI	GCTCC	1 cut(s)	848
Lsp1109I	GCAGC	7 cut(s)	319, 412, 461, 605, 608, 838, 980
LweI	GCATC	4 cut(s)	30, 1165, 1243, 1555
MaeI	CTAG	4 cut(s)	590, 684, 885, 1520
MaeII	ACGT	3 cut(s)	583, 1314, 1483
MaeIII	GTNAC	4 cut(s)	7, 451, 1194, 1353
MalI	GATC	7 cut(s)	41, 125, 130, 639, 654, 1032, 1452
MboI	GATC	7 cut(s)	39, 123, 128, 637, 652, 1030, 1450
MboII	GAAGA	4 cut(s)	512, 1120, 1475, 1570
MfeI	CAATTG	1 cut(s)	187
MflI	RGATCY	2 cut(s)	637, 1030
MhlI	GDGCHC	2 cut(s)	835, 1380
MlyI	GAGTC	2 cut(s)	221, 1154
MroI	TCCGGA	1 cut(s)	98
MroNI	GCCGGC	1 cut(s)	971
MroXI	GAANNNNTTC	4 cut(s)	87, 492, 759, 1125
MseI	TTAA	7 cut(s)	107, 228, 377, 626, 863, 929, 1440
MslI	CAYNNNNRTG	2 cut(s)	245, 843
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	4 cut(s)	99, 479, 972, 1513
MspR9I	CCNGG	2 cut(s)	113, 479
MunI	CAATTG	1 cut(s)	187
Mva1269I	GAATGC	3 cut(s)	414, 427, 894
MvaI	CCWGG	1 cut(s)	113
MwoI	GCNNNNNNNGC	3 cut(s)	299, 554, 1555
NaeI	GCCGGC	1 cut(s)	973
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	1320
NdeII	GATC	7 cut(s)	39, 123, 128, 637, 652, 1030, 1450
NgoMIV	GCCGGC	1 cut(s)	971
NlaIV	GGNNCC	3 cut(s)	483, 742, 940
NmuCI	GTSAC	3 cut(s)	7, 451, 1353
NspI	RCATGY	1 cut(s)	1403
PagI	TCATGA	1 cut(s)	1453
PceI	AGGCCT	1 cut(s)	604
PciI	ACATGT	1 cut(s)	1399
PciSI	GCTCTTC	1 cut(s)	1583
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	3 cut(s)	414, 427, 894
PdiI	GCCGGC	1 cut(s)	973
PdmI	GAANNNNTTC	4 cut(s)	87, 492, 759, 1125
PfeI	GAWTC	3 cut(s)	172, 760, 1285
PflMI	CCANNNNNTGG	1 cut(s)	1392
PinAI	ACCGGT	1 cut(s)	1512
PkrI	GCNGC	9 cut(s)	20, 309, 427, 476, 595, 598, 853, 970, 1426
Ple19I	CGATCG	1 cut(s)	131
PleI	GAGTC	2 cut(s)	220, 1153
PpsI	GAGTC	2 cut(s)	220, 1153
PscI	ACATGT	1 cut(s)	1399
PsiI	TTATAA	1 cut(s)	948
Psp6I	CCWGG	1 cut(s)	111
PspFI	CCCAGC	3 cut(s)	147, 221, 303
PspGI	CCWGG	1 cut(s)	111
PspN4I	GGNNCC	3 cut(s)	483, 742, 940
PspPI	GGNCC	6 cut(s)	101, 178, 301, 481, 521, 741
PstI	CTGCAG	1 cut(s)	856
PstNI	CAGNNNCTG	2 cut(s)	647, 1034
PsuI	RGATCY	2 cut(s)	637, 1030
PvuI	CGATCG	1 cut(s)	131
RsaI	GTAC	4 cut(s)	239, 251, 1418, 1430
RsaNI	GTAC	4 cut(s)	238, 250, 1417, 1429
RseI	CAYNNNNRTG	2 cut(s)	245, 843
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	1583
SaqAI	TTAA	7 cut(s)	107, 228, 377, 626, 863, 929, 1440
SatI	GCNGC	9 cut(s)	19, 308, 426, 475, 594, 597, 852, 969, 1425
Sau3AI	GATC	7 cut(s)	39, 123, 128, 637, 652, 1030, 1450
Sau96I	GGNCC	6 cut(s)	101, 178, 301, 481, 521, 741
SchI	GAGTC	2 cut(s)	221, 1154
ScrFI	CCNGG	2 cut(s)	113, 479
SduI	GDGCHC	2 cut(s)	835, 1380
SfaNI	GCATC	4 cut(s)	30, 1165, 1243, 1555
SfcI	CTRYAG	1 cut(s)	852
SinI	GGWCC	4 cut(s)	101, 178, 521, 741
SmiMI	CAYNNNNRTG	2 cut(s)	245, 843
SmlI	CTYRAG	2 cut(s)	429, 558
SmoI	CTYRAG	2 cut(s)	429, 558
SseBI	AGGCCT	1 cut(s)	604
SsiI	CCGC	5 cut(s)	18, 245, 293, 1023, 1424
SspI	AATATT	1 cut(s)	1188
SspMI	CTAG	4 cut(s)	590, 684, 885, 1520
StuI	AGGCCT	1 cut(s)	604
StyD4I	CCNGG	2 cut(s)	111, 477
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	4 cut(s)	7, 105, 375, 1353
TaiI	ACGT	3 cut(s)	586, 1317, 1486
TaqI	TCGA	4 cut(s)	131, 268, 1148, 1251
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	21, 1427
TfiI	GAWTC	3 cut(s)	172, 760, 1285
Tru1I	TTAA	7 cut(s)	107, 228, 377, 626, 863, 929, 1440
Tru9I	TTAA	7 cut(s)	107, 228, 377, 626, 863, 929, 1440
TscAI	CASTG	1 cut(s)	1222
TseFI	GTSAC	3 cut(s)	7, 451, 1353
TseI	GCWGC	7 cut(s)	307, 425, 474, 593, 596, 851, 968
Tsp45I	GTSAC	3 cut(s)	7, 451, 1353
TspDTI	ATGAA	2 cut(s)	778, 1307
TspRI	CASTG	1 cut(s)	1222
Van91I	CCANNNNNTGG	1 cut(s)	1392
VneI	GTGCAC	1 cut(s)	1376
VpaK11BI	GGWCC	4 cut(s)	101, 178, 521, 741
XagI	CCTNNNNNAGG	1 cut(s)	1038
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	1403
XmiI	GTMKAC	1 cut(s)	358
XmnI	GAANNNNTTC	4 cut(s)	87, 492, 759, 1125
XspI	CTAG	4 cut(s)	590, 684, 885, 1520

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.