Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Reverse (-)

9746227 .. 9751427

Gene Structure 5201 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG083500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1440 bp

ATGACGGTGACTAACAACGGCATCCAATACGCCGTTCAGATCATCACCAAACACTTCGGCAAACCCGTCGCTAAAGTATGCGAGACCCTTCTGAAATCCGGACCACTAAACCTGGGTGCCTTAATCCGATCGACGGCGCTCACTCCCCAGCAAGTCAAGAACTCTCTCCTGATTCTGGTTCAGCACAATTGCGTCCAGCCCTTTACCCAAGAGTCCAAGGCTGGGCTTAAAGTTCAGTACATTGTGGTGTACGATAACATACTCCATCGCCTTAGGTTTGCGAAATTTCTGGCGGTTGTGGCCCAGGAGCTTGATGATGATTGCAAACAACTTCTTGCTGGTTTACTCGAGCATGGTAGACTTACACAGCAACAATTAATGGACAGAGCCAATCAGAAATCCAAATCAAATAGTAGTCAAGTTCAGATTGCTGCTCAAGATAACTTTGTTAGACTTGTGACTGCCCGTTTTGTTGAACGCTGCCCGGCCCCTGAACCACTTCTTGAAGAAGCACCTGAACAAGAAGGTCCAAAGAAGCCACGCACTAAATCTGCTAAGACGGCTCAAGTATCAGAGACCATAGAACAACGTGTTCTTGCAGCAGCAAGGCCTATGGAAGCAATAAGATTCTTAATTATGACAGATGCAGAAACTGATGATCCGTCACAAAAAAGTGAGAATAATTCTTCTAGTATGAGTGTTGGGGAGAAGCGCAAGTTTGATGATTTGGATATTGGTGAAGAACATGGGTCTAATGATAAGGAAGTGATTCTTTGGCGTGCTAATTTTGAGCAGTTCATTCATTGTCTAAGGCATAAGGCTTGTGTTGAGAATGTTAGAGCACAACATGATGATGAAGCTGCAGTTGAGTTAGGAGAAACGCTGAAGGCAACTAGAACTGCAGAGACCAAAGTGAAAACAGATTATTCAGCCTTGAAGGAAAGTATAGAACTGCTTCAAAATGATGAGGTGGAGTTGATTGTTTTGAAAAGATATGGAGAGGATGCTCATAGAATATTTAGGTTACTGACAATGCAGTCAAAAGCTGGTCGGTTTTTTGAGACAGATATGATATCAAAAGAGGCCTTGGTTGACAAAAACGAAGCACCTAAGATTCTTTATAAGCTCTGGAAGGATGACTACGTTCATATGGAGAAATTATCATTGACAACAGCTAAACAGTCACAAGTCATGGTGTGGAAAGTACACAAGCCCATTGTTTGGACACATGTTTTAGATGAGATGTACCATGCGGCGTACAATTTGGTTAAGCGATATGATCATGAGAGGGAAGAGAATAAGGAGGTTACAAATACCCCGAAGGAGAAACGCGTGGGTGAATTAGAGAAAAAAGCCAACCGGTTTCTAGGTGTGAGGAAAATCATGGCATTATCCCTCATGAAGCTTGATGATGCTCTCATGCTCTTCCATGACTTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

479

Amino Acids

54.72

Weight (kDa)

7.25

Isoelectric Point (pI)

33.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_9	PF08221	10 - 66	7.3e-18	RNA polymerase III subunit RPC82 helix-turn-helix domain
RNA_pol_Rpc82	PF05645	147 - 316	1.1e-13	RNA polymerase III subunit RPC82
WHD_POLR3C	PF22536	324 - 392	3.5e-10	POLR3C, C-terminal winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1122
AasI	GACNNNNNNGTC	1 cut(s)	1036
AccB1I	GGYRCC	1 cut(s)	116
AccB7I	CCANNNNNTGG	1 cut(s)	1221
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	1 cut(s)	1332
AccIII	TCCGGA	1 cut(s)	98
AciI	CCGC	2 cut(s)	293, 1253
AclWI	GGATC	1 cut(s)	653
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	905
AfaI	GTAC	5 cut(s)	239, 251, 1206, 1247, 1259
AfiI	CCNNNNNNNGG	4 cut(s)	133, 175, 222, 1221
AflIII	ACRYGT	3 cut(s)	589, 1228, 1330
AgeI	ACCGGT	1 cut(s)	1359
AgsI	TTSAA	5 cut(s)	476, 506, 937, 959, 988
AjnI	CCWGG	2 cut(s)	111, 303
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	6 cut(s)	310, 860, 1046, 1126, 1175, 1405
AluI	AGCT	6 cut(s)	310, 860, 1046, 1126, 1175, 1405
Alw21I	GWGCWC	1 cut(s)	844
Alw26I	GTCTC	4 cut(s)	77, 569, 899, 1055
AlwI	GGATC	1 cut(s)	653
AlwNI	CAGNNNCTG	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	98
AoxI	GGCC	4 cut(s)	300, 486, 608, 1083
ApeKI	GCWGC	5 cut(s)	431, 480, 599, 602, 860
ApoI	RAATTY	1 cut(s)	284
AseI	ATTAAT	1 cut(s)	377
AsiGI	ACCGGT	1 cut(s)	1359
Asp700I	GAANNNNTTC	3 cut(s)	498, 768, 954
AspLEI	GCGC	2 cut(s)	139, 714
AspS9I	GGNCC	4 cut(s)	101, 301, 487, 527
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	4 cut(s)	19, 37, 749, 1349
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	101, 527
AxyI	CCTNAGG	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	1124, 1156
Bbv12I	GWGCWC	1 cut(s)	844
BbvI	GCAGC	5 cut(s)	418, 467, 611, 614, 847
BccI	CCATC	1 cut(s)	273
BceAI	ACGGC	4 cut(s)	17, 34, 150, 576
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	2 cut(s)	113, 305
BclI	TGATCA	1 cut(s)	1279
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	4 cut(s)	77, 569, 899, 1055
BfaI	CTAG	3 cut(s)	690, 894, 1367
BfmI	CTRYAG	2 cut(s)	861, 900
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	6 cut(s)	432, 481, 600, 603, 861, 1254
BlsI	GCNGC	6 cut(s)	433, 482, 601, 604, 862, 1255
Bme1390I	CCNGG	3 cut(s)	113, 305, 485
Bme18I	GGWCC	2 cut(s)	101, 527
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	4 cut(s)	101, 301, 487, 527
BmiI	GGNNCC	2 cut(s)	118, 489
BmrFI	CCNGG	3 cut(s)	113, 305, 485
BmsI	GCATC	4 cut(s)	30, 634, 994, 1402
BpuEI	CTTGAG	2 cut(s)	420, 549
BpuMI	CCSGG	1 cut(s)	485
BsaI	GGTCTC	3 cut(s)	77, 569, 899
BsaJI	CCNNGG	4 cut(s)	112, 216, 303, 1086
BsaWI	WCCGGW	2 cut(s)	98, 1359
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 175, 222, 1221
Bse118I	RCCGGY	1 cut(s)	1359
Bse21I	CCTNAGG	1 cut(s)	272
BseAI	TCCGGA	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	113, 305
BseDI	CCNNGG	4 cut(s)	112, 216, 303, 1086
BseGI	GGATG	3 cut(s)	21, 1009, 1141
BseLI	CCNNNNNNNGG	4 cut(s)	133, 175, 222, 1221
BseXI	GCAGC	5 cut(s)	418, 467, 611, 614, 847
BseYI	CCCAGC	2 cut(s)	147, 221
Bsh1236I	CGCG	1 cut(s)	1332
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	4 cut(s)	302, 488, 610, 1085
BshNI	GGYRCC	1 cut(s)	116
BshTI	ACCGGT	1 cut(s)	1359
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	1 cut(s)	844
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	99, 485, 1360
BslI	CCNNNNNNNGG	4 cut(s)	133, 175, 222, 1221
BsmAI	GTCTC	4 cut(s)	77, 569, 899, 1055
BsnI	GGCC	4 cut(s)	302, 488, 610, 1085
Bso31I	GGTCTC	3 cut(s)	77, 569, 899
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	1 cut(s)	844
Bsp13I	TCCGGA	1 cut(s)	98
Bsp143I	GATC	4 cut(s)	39, 128, 658, 1279
BspACI	CCGC	2 cut(s)	293, 1253
BspANI	GGCC	4 cut(s)	302, 488, 610, 1085
BspEI	TCCGGA	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	1332
BspHI	TCATGA	2 cut(s)	1282, 1398
BspLI	GGNNCC	2 cut(s)	118, 489
BspMAI	CTGCAG	2 cut(s)	865, 904
BspPI	GGATC	1 cut(s)	653
BspQI	GCTCTTC	1 cut(s)	1430
BspT107I	GGYRCC	1 cut(s)	116
BspTNI	GGTCTC	3 cut(s)	77, 569, 899
BsrFI	RCCGGY	1 cut(s)	1359
BssAI	RCCGGY	1 cut(s)	1359
BssECI	CCNNGG	4 cut(s)	112, 216, 303, 1086
BssMI	GATC	4 cut(s)	39, 128, 658, 1279
BssT1I	CCWWGG	2 cut(s)	216, 1086
Bst2UI	CCWGG	2 cut(s)	113, 305
Bst4CI	ACNGT	2 cut(s)	7, 1182
Bst6I	CTCTTC	2 cut(s)	1287, 1430
BstC8I	GCNNGC	1 cut(s)	780
BstDEI	CTNAG	4 cut(s)	272, 555, 809, 1110
BstF5I	GGATG	3 cut(s)	21, 1009, 1141
BstFNI	CGCG	1 cut(s)	1332
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	2 cut(s)	139, 714
BstKTI	GATC	4 cut(s)	42, 131, 661, 1282
BstMAI	GTCTC	4 cut(s)	77, 569, 899, 1055
BstMBI	GATC	4 cut(s)	39, 128, 658, 1279
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 560
BstNI	CCWGG	2 cut(s)	113, 305
BstNSI	RCATGY	1 cut(s)	1232
BstSCI	CCNGG	3 cut(s)	111, 303, 483
BstSFI	CTRYAG	2 cut(s)	861, 900
BstUI	CGCG	1 cut(s)	1332
BstV1I	GCAGC	5 cut(s)	418, 467, 611, 614, 847
Bsu36I	CCTNAGG	1 cut(s)	272
BsuRI	GGCC	4 cut(s)	302, 488, 610, 1085
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	3 cut(s)	21, 1009, 1141
Cac8I	GCNNGC	1 cut(s)	780
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	2 cut(s)	1282, 1398
CfoI	GCGC	2 cut(s)	139, 714
Cfr10I	RCCGGY	1 cut(s)	1359
Cfr13I	GGNCC	4 cut(s)	101, 301, 487, 527
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	5 cut(s)	238, 250, 1205, 1246, 1258
CspAI	ACCGGT	1 cut(s)	1359
CviQI	GTAC	5 cut(s)	238, 250, 1205, 1246, 1258
DdeI	CTNAG	4 cut(s)	272, 555, 809, 1110
DpnI	GATC	4 cut(s)	41, 130, 660, 1281
DpnII	GATC	4 cut(s)	39, 128, 658, 1279
DrdI	GACNNNNNNGTC	1 cut(s)	1036
DseDI	GACNNNNNNGTC	1 cut(s)	1036
Eam1104I	CTCTTC	2 cut(s)	1287, 1430
EarI	CTCTTC	2 cut(s)	1287, 1430
Eco130I	CCWWGG	2 cut(s)	216, 1086
Eco147I	AGGCCT	2 cut(s)	610, 1085
Eco31I	GGTCTC	3 cut(s)	77, 569, 899
Eco32I	GATATC	1 cut(s)	1074
Eco47I	GGWCC	2 cut(s)	101, 527
Eco57I	CTGAAG	1 cut(s)	905
Eco81I	CCTNAGG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	111, 303
EcoRV	GATATC	1 cut(s)	1074
EcoT14I	CCWWGG	2 cut(s)	216, 1086
ErhI	CCWWGG	2 cut(s)	216, 1086
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FauNDI	CATATG	1 cut(s)	1149
FbaI	TGATCA	1 cut(s)	1279
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	6 cut(s)	432, 481, 600, 603, 861, 1254
FokI	GGATG	3 cut(s)	8, 1016, 1148
Fsp4HI	GCNGC	6 cut(s)	432, 481, 600, 603, 861, 1254
FspBI	CTAG	3 cut(s)	690, 894, 1367
GlaI	GCGC	2 cut(s)	138, 713
GluI	GCNGC	6 cut(s)	432, 481, 600, 603, 861, 1254
GsaI	CCCAGC	2 cut(s)	151, 225
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	4 cut(s)	302, 488, 610, 1085
HapII	CCGG	3 cut(s)	99, 485, 1360
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	2 cut(s)	139, 714
Hin6I	GCGC	2 cut(s)	137, 712
HinP1I	GCGC	2 cut(s)	137, 712
HincII	GTYRAC	1 cut(s)	1093
HindII	GTYRAC	1 cut(s)	1093
HindIII	AAGCTT	1 cut(s)	1403
HinfI	GANTC	5 cut(s)	172, 212, 627, 769, 1114
HpaII	CCGG	3 cut(s)	99, 485, 1360
HphI	GGTGA	4 cut(s)	19, 37, 749, 1349
Hpy166II	GTNNAC	5 cut(s)	250, 344, 359, 1093, 1207
Hpy188I	TCNGA	6 cut(s)	39, 93, 128, 396, 426, 574
Hpy188III	TCNNGA	8 cut(s)	99, 157, 169, 437, 503, 1129, 1283, 1399
Hpy8I	GTNNAC	5 cut(s)	250, 344, 359, 1093, 1207
Hpy99I	CGWCG	2 cut(s)	71, 136
HpyAV	CCTTC	6 cut(s)	98, 518, 880, 931, 1126, 1315
HpyCH4III	ACNGT	2 cut(s)	7, 1182
HpyCH4IV	ACGT	2 cut(s)	589, 1143
HpyCH4V	TGCA	6 cut(s)	324, 599, 647, 863, 902, 1036
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 560
HpyF3I	CTNAG	4 cut(s)	272, 555, 809, 1110
HpySE526I	ACGT	2 cut(s)	589, 1143
HspAI	GCGC	2 cut(s)	137, 712
Kpn2I	TCCGGA	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	1279
Kzo9I	GATC	4 cut(s)	39, 128, 658, 1279
LguI	GCTCTTC	1 cut(s)	1430
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	5 cut(s)	418, 467, 611, 614, 847
LweI	GCATC	4 cut(s)	30, 634, 994, 1402
MaeI	CTAG	3 cut(s)	690, 894, 1367
MaeII	ACGT	2 cut(s)	589, 1143
MaeIII	GTNAC	6 cut(s)	7, 457, 663, 1023, 1182, 1306
MalI	GATC	4 cut(s)	41, 130, 660, 1281
MboI	GATC	4 cut(s)	39, 128, 658, 1279
MboII	GAAGA	5 cut(s)	518, 678, 752, 1304, 1417
MfeI	CAATTG	1 cut(s)	187
MhlI	GDGCHC	1 cut(s)	844
MluCI	AATT	9 cut(s)	187, 284, 374, 633, 682, 784, 1157, 1261, 1340
MluI	ACGCGT	1 cut(s)	1330
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	7 cut(s)	961, 994, 1075, 1281, 1297, 1368, 1406
MroI	TCCGGA	1 cut(s)	98
MroXI	GAANNNNTTC	3 cut(s)	498, 768, 954
MseI	TTAA	5 cut(s)	122, 228, 377, 632, 1269
MslI	CAYNNNNRTG	2 cut(s)	245, 852
MspI	CCGG	3 cut(s)	99, 485, 1360
MspR9I	CCNGG	3 cut(s)	113, 305, 485
MunI	CAATTG	1 cut(s)	187
MvaI	CCWGG	2 cut(s)	113, 305
MvnI	CGCG	1 cut(s)	1332
MwoI	GCNNNNNNNGC	2 cut(s)	299, 560
NciI	CCSGG	1 cut(s)	485
NdeI	CATATG	1 cut(s)	1149
NdeII	GATC	4 cut(s)	39, 128, 658, 1279
NlaIV	GGNNCC	2 cut(s)	118, 489
NmuCI	GTSAC	4 cut(s)	7, 457, 663, 1182
NspI	RCATGY	1 cut(s)	1232
PaeR7I	CTCGAG	1 cut(s)	347
PagI	TCATGA	2 cut(s)	1282, 1398
PceI	AGGCCT	2 cut(s)	610, 1085
PciI	ACATGT	1 cut(s)	1228
PciSI	GCTCTTC	1 cut(s)	1430
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdmI	GAANNNNTTC	3 cut(s)	498, 768, 954
PfeI	GAWTC	4 cut(s)	172, 627, 769, 1114
PflMI	CCANNNNNTGG	1 cut(s)	1221
PinAI	ACCGGT	1 cut(s)	1359
PkrI	GCNGC	6 cut(s)	433, 482, 601, 604, 862, 1255
Ple19I	CGATCG	1 cut(s)	131
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PscI	ACATGT	1 cut(s)	1228
PshBI	ATTAAT	1 cut(s)	377
PsiI	TTATAA	1 cut(s)	1122
Psp6I	CCWGG	2 cut(s)	111, 303
PspFI	CCCAGC	2 cut(s)	147, 221
PspGI	CCWGG	2 cut(s)	111, 303
PspN4I	GGNNCC	2 cut(s)	118, 489
PspPI	GGNCC	4 cut(s)	101, 301, 487, 527
PspXI	VCTCGAGB	1 cut(s)	347
PstI	CTGCAG	2 cut(s)	865, 904
PstNI	CAGNNNCTG	1 cut(s)	653
PvuI	CGATCG	1 cut(s)	131
RsaI	GTAC	5 cut(s)	239, 251, 1206, 1247, 1259
RsaNI	GTAC	5 cut(s)	238, 250, 1205, 1246, 1258
RseI	CAYNNNNRTG	2 cut(s)	245, 852
SapI	GCTCTTC	1 cut(s)	1430
SaqAI	TTAA	5 cut(s)	122, 228, 377, 632, 1269
SatI	GCNGC	6 cut(s)	432, 481, 600, 603, 861, 1254
Sau3AI	GATC	4 cut(s)	39, 128, 658, 1279
Sau96I	GGNCC	4 cut(s)	101, 301, 487, 527
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	113, 305, 485
SduI	GDGCHC	1 cut(s)	844
SfaNI	GCATC	4 cut(s)	30, 634, 994, 1402
SfcI	CTRYAG	2 cut(s)	861, 900
Sfr274I	CTCGAG	1 cut(s)	347
SinI	GGWCC	2 cut(s)	101, 527
SlaI	CTCGAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	2 cut(s)	245, 852
SmlI	CTYRAG	3 cut(s)	347, 435, 564
SmoI	CTYRAG	3 cut(s)	347, 435, 564
Sse9I	AATT	9 cut(s)	187, 284, 374, 633, 682, 784, 1157, 1261, 1340
SseBI	AGGCCT	2 cut(s)	610, 1085
SsiI	CCGC	2 cut(s)	293, 1253
SspI	AATATT	1 cut(s)	1017
SspMI	CTAG	3 cut(s)	690, 894, 1367
StuI	AGGCCT	2 cut(s)	610, 1085
StyD4I	CCNGG	3 cut(s)	111, 303, 483
StyI	CCWWGG	2 cut(s)	216, 1086
TaaI	ACNGT	2 cut(s)	7, 1182
TaiI	ACGT	2 cut(s)	592, 1146
TaqI	TCGA	2 cut(s)	131, 348
TasI	AATT	9 cut(s)	187, 284, 374, 633, 682, 784, 1157, 1261, 1340
TatI	WGTACW	2 cut(s)	237, 1204
TauI	GCSGC	1 cut(s)	1256
TfiI	GAWTC	4 cut(s)	172, 627, 769, 1114
Tru1I	TTAA	5 cut(s)	122, 228, 377, 632, 1269
Tru9I	TTAA	5 cut(s)	122, 228, 377, 632, 1269
TseFI	GTSAC	4 cut(s)	7, 457, 663, 1182
TseI	GCWGC	5 cut(s)	431, 480, 599, 602, 860
Tsp45I	GTSAC	4 cut(s)	7, 457, 663, 1182
TspDTI	ATGAA	5 cut(s)	787, 791, 870, 1136, 1415
TspGWI	ACGGA	1 cut(s)	651
Van91I	CCANNNNNTGG	1 cut(s)	1221
VpaK11BI	GGWCC	2 cut(s)	101, 527
VspI	ATTAAT	1 cut(s)	377
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	1232
XhoI	CTCGAG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	358
XmnI	GAANNNNTTC	3 cut(s)	498, 768, 954
XspI	CTAG	3 cut(s)	690, 894, 1367

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.