Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Forward (+)

64396182 .. 64401888

Gene Structure 5707 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ60101

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1743 bp

ATGCTCGTCACAATAACCCGGCCCGGGTTAGTTCGGTTAGGGCTCTGCAAACTCCCACCGTTTATTTCCCGCGTCTCTCTAACTGAAGCTTCAAACCAGAAGAAGAAGAAGAAGAAGATGACGGTGACTAACAGCGGCATCCAATACGCCGTTCAGATCATCACCAAACACTTCGGCAACCTCGTCGCTAAAGTTTGCGAAACCCTTCTGAAATCCGGACCGTTAAACCTGGGCGCTCTGATCCGATCGACGGCGCTCACTCCCCAGCAAGTCAAGAACTCTCTCCTGATTCTGGTCCAGCACAATTGCGTCCAGCCCTTTACCCAAGAGTCCAAGGCTGGGCTTAAAGTTCAGTACATGGCGGTGTACGATAACATACTCCATCGACTTAGGTTTGCCAAATTTCTGGCGGTTGTGGCCCAGGAGCTTGATGATGATTGCAAACAACTTCTTGCTGGTTTACTTGAACATGGTAGACTTACACAGCAACAGTTAATGGACAGAGCCAATCAGAAATCCAAATCAAATAGCAGTCAAGTTCAGAATGCTGCTCAAGATAACTTTATTAGACTTGTGACTGCTCGTTTTGTTGAACGCTGCCCGGCCCCTGAACCACTTCTTGAAGAAGCACCTGAACAAGAAGGTCCAAAGAAGCCACGCTCTAAATCTGCTAAGATGGCTCAAGTTTCAGAGACCATAGAACAACGTGTTCTAGCAGCAGCAAGGCCTATGGAAGCAATAAGATTTTTAATTACGACAAATCCAGAAACTGATGATCCATCACAAAAAAGTGAGAATAATTCCTCTAGTATGAGTGTTGGGGAGAAGCGCAAGTTTGATGATTTGGATATTGGTGAACATGGGTCCAATGATAAGGAAGTGATTCTTTGGCGTGCTAATTTTGAGCAGTTCATTCGTTGTCTAAGGCATAAGGCTTGTGTTGAGAATGTTAGAGCACGACATGATGATGGAGCTGCAGTTGTGTTAAGAGCTGTGCTGAAGGCAACTAGAATGCAGGAGACCAAAGTGAAAACAGATTATTCAGTTCCTTTAAAGATGGGTGCCATTTATAATGAGGTGATAGATAGTGCAGCCGGCCGTAATTTGACCAAGGTTTCTGTCAAAGCTTCCCTCCACTTGTTGTGCGGTGCACCTCCTGTAAGAGGAGGATATGAGGGTGAGGGTGAGGATGAGGATGAGGATGAGGATGAGGATGTGCCATATAGCATTGACTTGAAGAAAATTATAGAACTGCTTCAGAATGATGAGGTGGAGTCGATTGTTTTGAAAAGATATGGACAGGATGCTTGTAGAATATTTAGGTTACTGACAAGCCAGTCAAAGCCGGCTGGTCAGTTTTTTGAGACAGATAAGATATCAGTCGATGCCCTTGTTGACAAAAAGGAAACACCTAAGATTCTCTATAAGCTCTGGAAGGATGACTACGTTCATATGGAGAAATTATCATTGACAACAGCTAAACAGTCACAAGTCATGGTGTGGAAAGTGCACAAGTCCATTGTTTGGGAACATGTTTTAGATGAGATGTACCATGCGGCGTACAATTTGGTTAAGCGATATGATCATGAGAGGGAAGAGAATAAGGAGGTTACAAATACCCCGAAGGAGAAACGTGTCGGTGAATTAGAGAAAAAAGCCAACCGGTTTCTAGGTGTCAGGAAAATTATGGCATTATCGCTTGTGAAGCTTGATGATGCTCTCATGCTCTTCCATGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

580

Amino Acids

65.64

Weight (kDa)

8.77

Isoelectric Point (pI)

38.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_9	PF08221	49 - 105	2.7e-18	RNA polymerase III subunit RPC82 helix-turn-helix domain
RNA_pol_Rpc82	PF05645	186 - 351	2.2e-18	RNA polymerase III subunit RPC82
WHD_POLR3C	PF22536	424 - 493	1e-10	POLR3C, C-terminal winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1071
AasI	GACNNNNNNGTC	1 cut(s)	1336
AccB1I	GGYRCC	1 cut(s)	1061
AccB7I	CCANNNNNTGG	1 cut(s)	1524
AccI	GTMKAC	1 cut(s)	475
AccII	CGCG	1 cut(s)	72
AccIII	TCCGGA	1 cut(s)	215
AciI	CCGC	6 cut(s)	70, 135, 362, 410, 1146, 1556
AclWI	GGATC	2 cut(s)	235, 770
AcoI	YGGCCR	1 cut(s)	1096
AcsI	RAATTY	1 cut(s)	401
AcuI	CTGAAG	3 cut(s)	105, 1019, 1241
AfaI	GTAC	4 cut(s)	356, 368, 1550, 1562
AfiI	CCNNNNNNNGG	6 cut(s)	24, 250, 292, 339, 1163, 1524
AflIII	ACRYGT	3 cut(s)	706, 1531, 1633
AgeI	ACCGGT	1 cut(s)	1662
AgsI	TTSAA	6 cut(s)	93, 467, 593, 623, 1237, 1288
AjnI	CCWGG	2 cut(s)	228, 420
AjuI	GAANNNNNNNTTGG	2 cut(s)	135, 167
AluBI	AGCT	8 cut(s)	89, 427, 974, 992, 1127, 1429, 1478, 1708
AluI	AGCT	8 cut(s)	89, 427, 974, 992, 1127, 1429, 1478, 1708
Alw21I	GWGCWC	3 cut(s)	958, 1153, 1512
Alw26I	GTCTC	4 cut(s)	79, 686, 1013, 1358
Alw44I	GTGCAC	2 cut(s)	1149, 1508
AlwI	GGATC	2 cut(s)	235, 770
AlwNI	CAGNNNCTG	1 cut(s)	770
Ama87I	CYCGRG	1 cut(s)	23
Aor13HI	TCCGGA	1 cut(s)	215
AoxI	GGCC	5 cut(s)	20, 417, 603, 725, 1096
ApaLI	GTGCAC	2 cut(s)	1149, 1508
ApeKI	GCWGC	6 cut(s)	548, 597, 716, 719, 974, 1091
ApoI	RAATTY	1 cut(s)	401
AsiGI	ACCGGT	1 cut(s)	1662
Asp700I	GAANNNNTTC	4 cut(s)	204, 615, 882, 1254
AspLEI	GCGC	3 cut(s)	236, 256, 831
AspS9I	GGNCC	7 cut(s)	21, 218, 295, 418, 604, 644, 864
AsuC2I	CCSGG	4 cut(s)	19, 24, 25, 602
AsuHPI	GGTGA	7 cut(s)	136, 154, 866, 1090, 1190, 1196, 1652
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	4 cut(s)	218, 295, 644, 864
BaeGI	GKGCMC	2 cut(s)	1153, 1512
BanI	GGYRCC	1 cut(s)	1061
BanII	GRGCYC	1 cut(s)	45
BarI	GAAGNNNNNNTAC	2 cut(s)	1427, 1459
Bbv12I	GWGCWC	3 cut(s)	958, 1153, 1512
BbvI	GCAGC	6 cut(s)	535, 584, 728, 731, 961, 1103
BccI	CCATC	5 cut(s)	390, 670, 787, 962, 1051
BceAI	ACGGC	3 cut(s)	134, 267, 1083
BcgI	CGANNNNNNTGC	4 cut(s)	166, 200, 896, 930
BciT130I	CCWGG	2 cut(s)	230, 422
BclI	TGATCA	1 cut(s)	1582
BcnI	CCSGG	4 cut(s)	19, 24, 25, 602
BcoDI	GTCTC	4 cut(s)	79, 686, 1013, 1358
BfaI	CTAG	4 cut(s)	713, 807, 1008, 1670
BfmI	CTRYAG	1 cut(s)	975
BfoI	RGCGCY	2 cut(s)	237, 257
BisI	GCNGC	8 cut(s)	136, 549, 598, 717, 720, 975, 1092, 1557
BlsI	GCNGC	8 cut(s)	137, 550, 599, 718, 721, 976, 1093, 1558
Bme1390I	CCNGG	6 cut(s)	19, 24, 25, 230, 422, 602
Bme18I	GGWCC	4 cut(s)	218, 295, 644, 864
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	7 cut(s)	21, 218, 295, 418, 604, 644, 864
BmiI	GGNNCC	3 cut(s)	606, 865, 1063
BmrFI	CCNGG	6 cut(s)	19, 24, 25, 230, 422, 602
BmsI	GCATC	4 cut(s)	147, 1294, 1375, 1705
BpuEI	CTTGAG	2 cut(s)	537, 666
BpuMI	CCSGG	4 cut(s)	19, 24, 25, 602
BsaI	GGTCTC	2 cut(s)	686, 1013
BsaJI	CCNNGG	5 cut(s)	23, 229, 333, 420, 1110
BsaWI	WCCGGW	2 cut(s)	215, 1662
BsaXI	ACNNNNNCTCC	2 cut(s)	963, 993
Bsc4I	CCNNNNNNNGG	6 cut(s)	24, 250, 292, 339, 1163, 1524
Bse118I	RCCGGY	3 cut(s)	1094, 1345, 1662
Bse1I	ACTGG	1 cut(s)	1336
BseAI	TCCGGA	1 cut(s)	215
BseBI	CCWGG	2 cut(s)	230, 422
BseDI	CCNNGG	5 cut(s)	23, 229, 333, 420, 1110
BseGI	GGATG	8 cut(s)	138, 1195, 1201, 1207, 1213, 1219, 1309, 1444
BseLI	CCNNNNNNNGG	6 cut(s)	24, 250, 292, 339, 1163, 1524
BseNI	ACTGG	1 cut(s)	1336
BseRI	GAGGAG	1 cut(s)	1179
BseSI	GKGCMC	2 cut(s)	1153, 1512
BseX3I	CGGCCG	1 cut(s)	1096
BseXI	GCAGC	6 cut(s)	535, 584, 728, 731, 961, 1103
BseYI	CCCAGC	2 cut(s)	264, 338
BsgI	GTGCAG	1 cut(s)	1110
Bsh1236I	CGCG	1 cut(s)	72
Bsh1285I	CGRYCG	2 cut(s)	248, 1099
BshFI	GGCC	5 cut(s)	22, 419, 605, 727, 1098
BshNI	GGYRCC	1 cut(s)	1061
BshTI	ACCGGT	1 cut(s)	1662
BsiEI	CGRYCG	2 cut(s)	248, 1099
BsiHKAI	GWGCWC	3 cut(s)	958, 1153, 1512
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	7 cut(s)	19, 24, 216, 602, 1095, 1346, 1663
BslI	CCNNNNNNNGG	6 cut(s)	24, 250, 292, 339, 1163, 1524
BsmAI	GTCTC	4 cut(s)	79, 686, 1013, 1358
BsmBI	CGTCTC	1 cut(s)	79
BsmI	GAATGC	2 cut(s)	550, 1017
BsnI	GGCC	5 cut(s)	22, 419, 605, 727, 1098
Bso31I	GGTCTC	2 cut(s)	686, 1013
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	4 cut(s)	45, 958, 1153, 1512
Bsp13I	TCCGGA	1 cut(s)	215
Bsp143I	GATC	5 cut(s)	156, 240, 245, 775, 1582
BspACI	CCGC	6 cut(s)	70, 135, 362, 410, 1146, 1556
BspANI	GGCC	5 cut(s)	22, 419, 605, 727, 1098
BspEI	TCCGGA	1 cut(s)	215
BspFNI	CGCG	1 cut(s)	72
BspHI	TCATGA	1 cut(s)	1585
BspLI	GGNNCC	3 cut(s)	606, 865, 1063
BspMAI	CTGCAG	1 cut(s)	979
BspPI	GGATC	2 cut(s)	235, 770
BspQI	GCTCTTC	1 cut(s)	1733
BspT107I	GGYRCC	1 cut(s)	1061
BspTNI	GGTCTC	2 cut(s)	686, 1013
BsrFI	RCCGGY	3 cut(s)	1094, 1345, 1662
BsrI	ACTGG	1 cut(s)	1336
BssAI	RCCGGY	3 cut(s)	1094, 1345, 1662
BssECI	CCNNGG	5 cut(s)	23, 229, 333, 420, 1110
BssMI	GATC	5 cut(s)	156, 240, 245, 775, 1582
BssT1I	CCWWGG	2 cut(s)	333, 1110
Bst2UI	CCWGG	2 cut(s)	230, 422
Bst4CI	ACNGT	5 cut(s)	60, 124, 222, 492, 1485
Bst6I	CTCTTC	2 cut(s)	1590, 1733
BstC8I	GCNNGC	3 cut(s)	894, 1096, 1347
BstDEI	CTNAG	4 cut(s)	389, 672, 923, 1413
BstENI	CCTNNNNNAGG	1 cut(s)	1161
BstF5I	GGATG	8 cut(s)	138, 1195, 1201, 1207, 1213, 1219, 1309, 1444
BstFNI	CGCG	1 cut(s)	72
BstH2I	RGCGCY	2 cut(s)	237, 257
BstHHI	GCGC	3 cut(s)	236, 256, 831
BstKTI	GATC	5 cut(s)	159, 243, 248, 778, 1585
BstMAI	GTCTC	4 cut(s)	79, 686, 1013, 1358
BstMBI	GATC	5 cut(s)	156, 240, 245, 775, 1582
BstMCI	CGRYCG	2 cut(s)	248, 1099
BstMWI	GCNNNNNNNGC	3 cut(s)	416, 677, 1705
BstNI	CCWGG	2 cut(s)	230, 422
BstNSI	RCATGY	1 cut(s)	1535
BstSCI	CCNGG	6 cut(s)	17, 22, 23, 228, 420, 600
BstSFI	CTRYAG	1 cut(s)	975
BstSLI	GKGCMC	2 cut(s)	1153, 1512
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	6 cut(s)	535, 584, 728, 731, 961, 1103
BstXI	CCANNNNNNTGG	1 cut(s)	406
BstZI	CGGCCG	1 cut(s)	1096
BsuRI	GGCC	5 cut(s)	22, 419, 605, 727, 1098
BtsCI	GGATG	8 cut(s)	138, 1195, 1201, 1207, 1213, 1219, 1309, 1444
Cac8I	GCNNGC	3 cut(s)	894, 1096, 1347
CaiI	CAGNNNCTG	1 cut(s)	770
CciI	TCATGA	1 cut(s)	1585
CfoI	GCGC	3 cut(s)	236, 256, 831
Cfr10I	RCCGGY	3 cut(s)	1094, 1345, 1662
Cfr13I	GGNCC	7 cut(s)	21, 218, 295, 418, 604, 644, 864
Cfr9I	CCCGGG	1 cut(s)	23
CpoI	CGGWCCG	1 cut(s)	218
CseI	GACGC	2 cut(s)	61, 298
Csp6I	GTAC	4 cut(s)	355, 367, 1549, 1561
CspAI	ACCGGT	1 cut(s)	1662
CspI	CGGWCCG	1 cut(s)	218
CviQI	GTAC	4 cut(s)	355, 367, 1549, 1561
DdeI	CTNAG	4 cut(s)	389, 672, 923, 1413
DpnI	GATC	5 cut(s)	158, 242, 247, 777, 1584
DpnII	GATC	5 cut(s)	156, 240, 245, 775, 1582
DraI	TTTAAA	1 cut(s)	1053
DrdI	GACNNNNNNGTC	1 cut(s)	1336
DseDI	GACNNNNNNGTC	1 cut(s)	1336
EaeI	YGGCCR	1 cut(s)	1096
EagI	CGGCCG	1 cut(s)	1096
Eam1104I	CTCTTC	2 cut(s)	1590, 1733
EarI	CTCTTC	2 cut(s)	1590, 1733
EclXI	CGGCCG	1 cut(s)	1096
Eco130I	CCWWGG	2 cut(s)	333, 1110
Eco147I	AGGCCT	1 cut(s)	727
Eco24I	GRGCYC	1 cut(s)	45
Eco31I	GGTCTC	2 cut(s)	686, 1013
Eco32I	GATATC	1 cut(s)	1377
Eco47I	GGWCC	4 cut(s)	218, 295, 644, 864
Eco52I	CGGCCG	1 cut(s)	1096
Eco57I	CTGAAG	3 cut(s)	105, 1019, 1241
Eco88I	CYCGRG	1 cut(s)	23
EcoNI	CCTNNNNNAGG	1 cut(s)	1161
EcoRII	CCWGG	2 cut(s)	228, 420
EcoRV	GATATC	1 cut(s)	1377
EcoT14I	CCWWGG	2 cut(s)	333, 1110
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	2 cut(s)	333, 1110
Esp3I	CGTCTC	1 cut(s)	79
FalI	AAGNNNNNCTT	2 cut(s)	870, 902
FauI	CCCGC	1 cut(s)	77
FauNDI	CATATG	1 cut(s)	1452
FbaI	TGATCA	1 cut(s)	1582
FblI	GTMKAC	1 cut(s)	475
Fnu4HI	GCNGC	8 cut(s)	136, 549, 598, 717, 720, 975, 1092, 1557
FokI	GGATG	8 cut(s)	125, 1202, 1208, 1214, 1220, 1226, 1316, 1451
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	8 cut(s)	136, 549, 598, 717, 720, 975, 1092, 1557
FspBI	CTAG	4 cut(s)	713, 807, 1008, 1670
GlaI	GCGC	3 cut(s)	235, 255, 830
GluI	GCNGC	8 cut(s)	136, 549, 598, 717, 720, 975, 1092, 1557
GsaI	CCCAGC	2 cut(s)	268, 342
HaeII	RGCGCY	2 cut(s)	237, 257
HaeIII	GGCC	5 cut(s)	22, 419, 605, 727, 1098
HapII	CCGG	7 cut(s)	19, 24, 216, 602, 1095, 1346, 1663
HgaI	GACGC	2 cut(s)	61, 298
HhaI	GCGC	3 cut(s)	236, 256, 831
Hin6I	GCGC	3 cut(s)	234, 254, 829
HinP1I	GCGC	3 cut(s)	234, 254, 829
HincII	GTYRAC	1 cut(s)	1396
HindII	GTYRAC	1 cut(s)	1396
HindIII	AAGCTT	3 cut(s)	87, 1125, 1706
HinfI	GANTC	5 cut(s)	289, 329, 883, 1274, 1417
HpaII	CCGG	7 cut(s)	19, 24, 216, 602, 1095, 1346, 1663
HphI	GGTGA	7 cut(s)	136, 154, 866, 1090, 1190, 1196, 1652
Hpy166II	GTNNAC	7 cut(s)	367, 461, 476, 857, 1151, 1396, 1510
Hpy188I	TCNGA	9 cut(s)	156, 210, 240, 245, 513, 543, 691, 1260, 1742
Hpy188III	TCNNGA	9 cut(s)	216, 274, 286, 554, 620, 764, 1432, 1586, 1678
Hpy8I	GTNNAC	7 cut(s)	367, 461, 476, 857, 1151, 1396, 1510
Hpy99I	CGWCG	2 cut(s)	188, 253
HpyAV	CCTTC	5 cut(s)	215, 635, 994, 1429, 1618
HpyCH4III	ACNGT	5 cut(s)	60, 124, 222, 492, 1485
HpyCH4IV	ACGT	3 cut(s)	706, 1446, 1633
HpyCH4V	TGCA	7 cut(s)	48, 441, 977, 1015, 1091, 1151, 1510
HpyF10VI	GCNNNNNNNGC	3 cut(s)	416, 677, 1705
HpyF3I	CTNAG	4 cut(s)	389, 672, 923, 1413
HpySE526I	ACGT	3 cut(s)	706, 1446, 1633
HspAI	GCGC	3 cut(s)	234, 254, 829
Kpn2I	TCCGGA	1 cut(s)	215
KroI	GCCGGC	2 cut(s)	1094, 1345
KroNI	GCCGGC	2 cut(s)	1096, 1347
Ksp22I	TGATCA	1 cut(s)	1582
Kzo9I	GATC	5 cut(s)	156, 240, 245, 775, 1582
LguI	GCTCTTC	1 cut(s)	1733
LmnI	GCTCC	2 cut(s)	424, 971
Lsp1109I	GCAGC	6 cut(s)	535, 584, 728, 731, 961, 1103
LweI	GCATC	4 cut(s)	147, 1294, 1375, 1705
MaeI	CTAG	4 cut(s)	713, 807, 1008, 1670
MaeII	ACGT	3 cut(s)	706, 1446, 1633
MaeIII	GTNAC	6 cut(s)	7, 124, 574, 1323, 1485, 1609
MalI	GATC	5 cut(s)	158, 242, 247, 777, 1584
MboI	GATC	5 cut(s)	156, 240, 245, 775, 1582
MfeI	CAATTG	1 cut(s)	304
MhlI	GDGCHC	4 cut(s)	45, 958, 1153, 1512
MlyI	GAGTC	2 cut(s)	338, 1283
MroI	TCCGGA	1 cut(s)	215
MroNI	GCCGGC	2 cut(s)	1094, 1345
MroXI	GAANNNNTTC	4 cut(s)	204, 615, 882, 1254
MseI	TTAA	7 cut(s)	224, 345, 494, 749, 986, 1052, 1572
MslI	CAYNNNNRTG	2 cut(s)	362, 966
MspA1I	CMGCKG	1 cut(s)	135
MspI	CCGG	7 cut(s)	19, 24, 216, 602, 1095, 1346, 1663
MspR9I	CCNGG	6 cut(s)	19, 24, 25, 230, 422, 602
MunI	CAATTG	1 cut(s)	304
Mva1269I	GAATGC	2 cut(s)	550, 1017
MvaI	CCWGG	2 cut(s)	230, 422
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	416, 677, 1705
NaeI	GCCGGC	2 cut(s)	1096, 1347
NciI	CCSGG	4 cut(s)	19, 24, 25, 602
NdeI	CATATG	1 cut(s)	1452
NdeII	GATC	5 cut(s)	156, 240, 245, 775, 1582
NgoMIV	GCCGGC	2 cut(s)	1094, 1345
NlaIV	GGNNCC	3 cut(s)	606, 865, 1063
NmuCI	GTSAC	4 cut(s)	7, 124, 574, 1485
NspI	RCATGY	1 cut(s)	1535
PagI	TCATGA	1 cut(s)	1585
PceI	AGGCCT	1 cut(s)	727
PciI	ACATGT	1 cut(s)	1531
PciSI	GCTCTTC	1 cut(s)	1733
PcsI	WCGNNNNNNNCGW	1 cut(s)	180
PctI	GAATGC	2 cut(s)	550, 1017
PdiI	GCCGGC	2 cut(s)	1096, 1347
PdmI	GAANNNNTTC	4 cut(s)	204, 615, 882, 1254
PfeI	GAWTC	3 cut(s)	289, 883, 1417
PflMI	CCANNNNNTGG	1 cut(s)	1524
PinAI	ACCGGT	1 cut(s)	1662
PkrI	GCNGC	8 cut(s)	137, 550, 599, 718, 721, 976, 1093, 1558
Ple19I	CGATCG	1 cut(s)	248
PleI	GAGTC	2 cut(s)	337, 1282
PpsI	GAGTC	2 cut(s)	337, 1282
PscI	ACATGT	1 cut(s)	1531
PsiI	TTATAA	1 cut(s)	1071
Psp6I	CCWGG	2 cut(s)	228, 420
PspFI	CCCAGC	2 cut(s)	264, 338
PspGI	CCWGG	2 cut(s)	228, 420
PspN4I	GGNNCC	3 cut(s)	606, 865, 1063
PspPI	GGNCC	7 cut(s)	21, 218, 295, 418, 604, 644, 864
PstI	CTGCAG	1 cut(s)	979
PstNI	CAGNNNCTG	1 cut(s)	770
PvuI	CGATCG	1 cut(s)	248
RsaI	GTAC	4 cut(s)	356, 368, 1550, 1562
RsaNI	GTAC	4 cut(s)	355, 367, 1549, 1561
RseI	CAYNNNNRTG	2 cut(s)	362, 966
Rsr2I	CGGWCCG	1 cut(s)	218
RsrII	CGGWCCG	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	1733
SaqAI	TTAA	7 cut(s)	224, 345, 494, 749, 986, 1052, 1572
SatI	GCNGC	8 cut(s)	136, 549, 598, 717, 720, 975, 1092, 1557
Sau3AI	GATC	5 cut(s)	156, 240, 245, 775, 1582
Sau96I	GGNCC	7 cut(s)	21, 218, 295, 418, 604, 644, 864
SchI	GAGTC	2 cut(s)	338, 1283
ScrFI	CCNGG	6 cut(s)	19, 24, 25, 230, 422, 602
SduI	GDGCHC	4 cut(s)	45, 958, 1153, 1512
SfaNI	GCATC	4 cut(s)	147, 1294, 1375, 1705
SfcI	CTRYAG	1 cut(s)	975
SinI	GGWCC	4 cut(s)	218, 295, 644, 864
SmaI	CCCGGG	1 cut(s)	25
SmiMI	CAYNNNNRTG	2 cut(s)	362, 966
SmlI	CTYRAG	2 cut(s)	552, 681
SmoI	CTYRAG	2 cut(s)	552, 681
SseBI	AGGCCT	1 cut(s)	727
SsiI	CCGC	6 cut(s)	70, 135, 362, 410, 1146, 1556
SspI	AATATT	1 cut(s)	1317
SspMI	CTAG	4 cut(s)	713, 807, 1008, 1670
StuI	AGGCCT	1 cut(s)	727
StyD4I	CCNGG	6 cut(s)	17, 22, 23, 228, 420, 600
StyI	CCWWGG	2 cut(s)	333, 1110
TaaI	ACNGT	5 cut(s)	60, 124, 222, 492, 1485
TaiI	ACGT	3 cut(s)	709, 1449, 1636
TaqI	TCGA	4 cut(s)	248, 385, 1277, 1383
TatI	WGTACW	1 cut(s)	354
TauI	GCSGC	2 cut(s)	138, 1559
TfiI	GAWTC	3 cut(s)	289, 883, 1417
Tru1I	TTAA	7 cut(s)	224, 345, 494, 749, 986, 1052, 1572
Tru9I	TTAA	7 cut(s)	224, 345, 494, 749, 986, 1052, 1572
TseFI	GTSAC	4 cut(s)	7, 124, 574, 1485
TseI	GCWGC	6 cut(s)	548, 597, 716, 719, 974, 1091
Tsp45I	GTSAC	4 cut(s)	7, 124, 574, 1485
TspDTI	ATGAA	2 cut(s)	901, 1439
TspMI	CCCGGG	1 cut(s)	23
Van91I	CCANNNNNTGG	1 cut(s)	1524
VneI	GTGCAC	2 cut(s)	1149, 1508
VpaK11BI	GGWCC	4 cut(s)	218, 295, 644, 864
XagI	CCTNNNNNAGG	1 cut(s)	1161
XapI	RAATTY	1 cut(s)	401
XceI	RCATGY	1 cut(s)	1535
XmaI	CCCGGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	475
XmnI	GAANNNNTTC	4 cut(s)	204, 615, 882, 1254
XspI	CTAG	4 cut(s)	713, 807, 1008, 1670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.