Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Reverse (-)

14675411 .. 14680795

Gene Structure 5385 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G008680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1557 bp

ATGACGGTGACTAACAACGGCATCCAATACGCCGTTCAGATCATCACCAAACACTTCGGCAAACCCGTCGCTAAAGTATGCGAGACCCTTCTGAAATCCGGACCACTAAACCTGGGTGACTTAATCCGATCGACGGCGCTCACTCCCCAGCAAGTCAAGAACTCTCTCCTGATTCTGGTTCAGCACAATTGCGTCCAGCCCTTTACCCAAGAGTCCAAGGCTGGGCTTAAAGTTCAGTACATTGCGGTGTACGATAACATACTCCATCGCCTTAGGTTTGCGAAATTTCTGGCGGTTGTGGCCCAGGAGCTTGATGATGATTGCAAACAACTTCTTGCTGGTTTACTCGAGCATGGTAGACTTACACAGCAACAATTAATGGACAGAGCCAATCAGAAATCCAAATCAAATAGCATTCAGATTGCTGCTCAAGATAACTTTGTTAGACTTGTGACTGCCCGTTTTGTTGAACGCTGCCCGGCCCCTGAACCACTTCTTGAAGAAGCACCTGAACAAGAAGGTCCAAAGAAGCCACGCACTAAATCTGCTAAGATGGCTCAAGTATCAGAGACCATAGAACAACGTGTTCTCGCAGCAGCAAGGCCTATGGAAGCAATAAGATTCTTAATTATGACAGATGCAGAAACTGATGATCCGTCACAAAAAAGTGATAATAATTCTTCTAGTATGAGTGTTGGGGAGAAGCGCAAGTTTGATGATTTGGATATTGGTGAAGAACATGGGTCTAATGATAAGGAAGTGATTCTTTGGCGTGCTAATTTTGAGCAGTTCATTCATTGTCTAAGGCATAAGGCTTGTGTTGAGAATGTTAGAGCACAACATGATGATGAAGCTGCAGTCGAGTTAGGAGAAACGCTGAAGGCAACTAGAACTGCAGAGACCAAAGTGAAATCAGATTATTCAGGTAAGCTGGAATCTAGGAAACAGGATTGTGTCAGAGCTTCCCTCAGCTTGTTCTGCGGTGCACCTCTTGTAACAGGAGTATATGAGGATGAGGGTGAGGGTGAGGGTGTGCCATATAGCGTTGCCTTGAAGGAAAGTATAGAACTTCTTCAAAATGATGAGGTGGAGTTGATTGTTTTGAAAAGATATGGAGAGGATGCTCATAGAATATTTAGGTTACTGACAATGCAGTCAAAAGCTGGTCGGTTTTTTGAGACAGATATGATATCAAAAGAGGCCTTGGTTGACAAAAACGAAGCACCTAAGATTCTTTATAAGCTCTGGAAGGATGACTACGTTCATATGGAGAAATTATCATTGACAACAGCTAAACAGTCACAAGTCATGGTGTGGAAAGTACACAAGCCCATTGTCTGGACACATGTTTTAGATGAGATGTACCATGCGGCGTACAATTTGGTTAAGCGATATGATCATGAGAGGGAAGAGAATAAGGAGGTTACAAATACCCCGAAGGAGAAACGCGTGGGTGAATTAGAGAAAAAAGCCAACCGGTTTCTAGGTGTGAGGAAAATCATGGCATTATCCCTCATGAAGCTTGATGATGCTCTCATGCTCTTCCATGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

518

Amino Acids

58.87

Weight (kDa)

6.46

Isoelectric Point (pI)

33.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_9	PF08221	10 - 66	2.8e-18	RNA polymerase III subunit RPC82 helix-turn-helix domain
RNA_pol_Rpc82	PF05645	145 - 313	6.9e-14	RNA polymerase III subunit RPC82
WHD_POLR3C	PF22536	363 - 431	3.9e-10	POLR3C, C-terminal winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1239
AasI	GACNNNNNNGTC	1 cut(s)	1153
AccB7I	CCANNNNNTGG	1 cut(s)	1338
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	1 cut(s)	1449
AccIII	TCCGGA	1 cut(s)	98
AciI	CCGC	4 cut(s)	245, 293, 981, 1370
AclWI	GGATC	1 cut(s)	647
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	1 cut(s)	899
AfaI	GTAC	5 cut(s)	239, 251, 1323, 1364, 1376
AfiI	CCNNNNNNNGG	4 cut(s)	133, 175, 222, 1338
AflIII	ACRYGT	3 cut(s)	583, 1345, 1447
AgeI	ACCGGT	1 cut(s)	1476
AgsI	TTSAA	5 cut(s)	470, 500, 1054, 1076, 1105
AjnI	CCWGG	2 cut(s)	111, 303
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	9 cut(s)	310, 854, 931, 962, 972, 1163, 1243, 1292, 1522
AluI	AGCT	9 cut(s)	310, 854, 931, 962, 972, 1163, 1243, 1292, 1522
Alw21I	GWGCWC	2 cut(s)	838, 988
Alw26I	GTCTC	4 cut(s)	77, 563, 893, 1172
Alw44I	GTGCAC	1 cut(s)	984
AlwI	GGATC	1 cut(s)	647
AlwNI	CAGNNNCTG	1 cut(s)	647
Ama87I	CYCGRG	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	98
AoxI	GGCC	4 cut(s)	300, 480, 602, 1200
ApaLI	GTGCAC	1 cut(s)	984
ApeKI	GCWGC	5 cut(s)	425, 474, 593, 596, 854
ApoI	RAATTY	1 cut(s)	284
AseI	ATTAAT	1 cut(s)	377
AsiGI	ACCGGT	1 cut(s)	1476
Asp700I	GAANNNNTTC	3 cut(s)	492, 762, 1071
AspLEI	GCGC	2 cut(s)	139, 708
AspS9I	GGNCC	4 cut(s)	101, 301, 481, 521
AsuC2I	CCSGG	1 cut(s)	479
AsuHPI	GGTGA	7 cut(s)	19, 37, 128, 743, 1031, 1037, 1466
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	101, 521
AxyI	CCTNAGG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	988
BarI	GAAGNNNNNNTAC	2 cut(s)	1241, 1273
Bbv12I	GWGCWC	2 cut(s)	838, 988
BbvCI	CCTCAGC	1 cut(s)	968
BbvI	GCAGC	5 cut(s)	412, 461, 605, 608, 841
BccI	CCATC	2 cut(s)	273, 547
BceAI	ACGGC	3 cut(s)	17, 34, 150
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	2 cut(s)	113, 305
BclI	TGATCA	1 cut(s)	1396
BcnI	CCSGG	1 cut(s)	479
BcoDI	GTCTC	4 cut(s)	77, 563, 893, 1172
BfaI	CTAG	4 cut(s)	684, 888, 939, 1484
BfmI	CTRYAG	2 cut(s)	855, 894
BfoI	RGCGCY	1 cut(s)	140
BisI	GCNGC	6 cut(s)	426, 475, 594, 597, 855, 1371
BlsI	GCNGC	6 cut(s)	427, 476, 595, 598, 856, 1372
Bme1390I	CCNGG	3 cut(s)	113, 305, 479
Bme18I	GGWCC	2 cut(s)	101, 521
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	4 cut(s)	101, 301, 481, 521
BmiI	GGNNCC	1 cut(s)	483
BmrFI	CCNGG	3 cut(s)	113, 305, 479
BmsI	GCATC	4 cut(s)	30, 628, 1111, 1519
BplI	GAGNNNNNCTC	2 cut(s)	951, 983
Bpu10I	CCTNAGC	1 cut(s)	968
BpuEI	CTTGAG	2 cut(s)	414, 543
BpuMI	CCSGG	1 cut(s)	479
BsaI	GGTCTC	3 cut(s)	77, 563, 893
BsaJI	CCNNGG	4 cut(s)	112, 216, 303, 1203
BsaWI	WCCGGW	2 cut(s)	98, 1476
Bsc4I	CCNNNNNNNGG	4 cut(s)	133, 175, 222, 1338
Bse118I	RCCGGY	1 cut(s)	1476
Bse21I	CCTNAGG	1 cut(s)	272
Bse3DI	GCAATG	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	113, 305
BseDI	CCNNGG	4 cut(s)	112, 216, 303, 1203
BseGI	GGATG	4 cut(s)	21, 1018, 1126, 1258
BseLI	CCNNNNNNNGG	4 cut(s)	133, 175, 222, 1338
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	1 cut(s)	982
BseSI	GKGCMC	1 cut(s)	988
BseXI	GCAGC	5 cut(s)	412, 461, 605, 608, 841
BseYI	CCCAGC	2 cut(s)	147, 221
Bsh1236I	CGCG	1 cut(s)	1449
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	4 cut(s)	302, 482, 604, 1202
BshTI	ACCGGT	1 cut(s)	1476
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	2 cut(s)	838, 988
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	99, 479, 1477
BslI	CCNNNNNNNGG	4 cut(s)	133, 175, 222, 1338
BsmAI	GTCTC	4 cut(s)	77, 563, 893, 1172
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	4 cut(s)	302, 482, 604, 1202
Bso31I	GGTCTC	3 cut(s)	77, 563, 893
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	838, 988
Bsp13I	TCCGGA	1 cut(s)	98
Bsp143I	GATC	4 cut(s)	39, 128, 652, 1396
BspACI	CCGC	4 cut(s)	245, 293, 981, 1370
BspANI	GGCC	4 cut(s)	302, 482, 604, 1202
BspCNI	CTCAG	1 cut(s)	981
BspEI	TCCGGA	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	1449
BspHI	TCATGA	2 cut(s)	1399, 1515
BspLI	GGNNCC	1 cut(s)	483
BspMAI	CTGCAG	2 cut(s)	859, 898
BspPI	GGATC	1 cut(s)	647
BspQI	GCTCTTC	1 cut(s)	1547
BspTNI	GGTCTC	3 cut(s)	77, 563, 893
BsrDI	GCAATG	1 cut(s)	240
BsrFI	RCCGGY	1 cut(s)	1476
BssAI	RCCGGY	1 cut(s)	1476
BssECI	CCNNGG	4 cut(s)	112, 216, 303, 1203
BssMI	GATC	4 cut(s)	39, 128, 652, 1396
BssT1I	CCWWGG	2 cut(s)	216, 1203
Bst2UI	CCWGG	2 cut(s)	113, 305
Bst4CI	ACNGT	2 cut(s)	7, 1299
Bst6I	CTCTTC	2 cut(s)	1404, 1547
BstC8I	GCNNGC	1 cut(s)	774
BstDEI	CTNAG	5 cut(s)	272, 549, 803, 968, 1227
BstF5I	GGATG	4 cut(s)	21, 1018, 1126, 1258
BstFNI	CGCG	1 cut(s)	1449
BstH2I	RGCGCY	1 cut(s)	140
BstHHI	GCGC	2 cut(s)	139, 708
BstKTI	GATC	4 cut(s)	42, 131, 655, 1399
BstMAI	GTCTC	4 cut(s)	77, 563, 893, 1172
BstMBI	GATC	4 cut(s)	39, 128, 652, 1396
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 554, 978
BstNI	CCWGG	2 cut(s)	113, 305
BstNSI	RCATGY	1 cut(s)	1349
BstSCI	CCNGG	3 cut(s)	111, 303, 477
BstSFI	CTRYAG	2 cut(s)	855, 894
BstSLI	GKGCMC	1 cut(s)	988
BstUI	CGCG	1 cut(s)	1449
BstV1I	GCAGC	5 cut(s)	412, 461, 605, 608, 841
Bsu36I	CCTNAGG	1 cut(s)	272
BsuRI	GGCC	4 cut(s)	302, 482, 604, 1202
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	4 cut(s)	21, 1018, 1126, 1258
Cac8I	GCNNGC	1 cut(s)	774
CaiI	CAGNNNCTG	1 cut(s)	647
CciI	TCATGA	2 cut(s)	1399, 1515
CfoI	GCGC	2 cut(s)	139, 708
Cfr10I	RCCGGY	1 cut(s)	1476
Cfr13I	GGNCC	4 cut(s)	101, 301, 481, 521
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	5 cut(s)	238, 250, 1322, 1363, 1375
CspAI	ACCGGT	1 cut(s)	1476
CviQI	GTAC	5 cut(s)	238, 250, 1322, 1363, 1375
DdeI	CTNAG	5 cut(s)	272, 549, 803, 968, 1227
DpnI	GATC	4 cut(s)	41, 130, 654, 1398
DpnII	GATC	4 cut(s)	39, 128, 652, 1396
DrdI	GACNNNNNNGTC	1 cut(s)	1153
DseDI	GACNNNNNNGTC	1 cut(s)	1153
Eam1104I	CTCTTC	2 cut(s)	1404, 1547
EarI	CTCTTC	2 cut(s)	1404, 1547
Eco130I	CCWWGG	2 cut(s)	216, 1203
Eco147I	AGGCCT	2 cut(s)	604, 1202
Eco31I	GGTCTC	3 cut(s)	77, 563, 893
Eco32I	GATATC	1 cut(s)	1191
Eco47I	GGWCC	2 cut(s)	101, 521
Eco57I	CTGAAG	1 cut(s)	899
Eco81I	CCTNAGG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	111, 303
EcoRV	GATATC	1 cut(s)	1191
EcoT14I	CCWWGG	2 cut(s)	216, 1203
ErhI	CCWWGG	2 cut(s)	216, 1203
FalI	AAGNNNNNCTT	2 cut(s)	750, 782
FauNDI	CATATG	1 cut(s)	1266
FbaI	TGATCA	1 cut(s)	1396
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	6 cut(s)	426, 475, 594, 597, 855, 1371
FokI	GGATG	4 cut(s)	8, 1025, 1133, 1265
Fsp4HI	GCNGC	6 cut(s)	426, 475, 594, 597, 855, 1371
FspBI	CTAG	4 cut(s)	684, 888, 939, 1484
GlaI	GCGC	2 cut(s)	138, 707
GluI	GCNGC	6 cut(s)	426, 475, 594, 597, 855, 1371
GsaI	CCCAGC	2 cut(s)	151, 225
HaeII	RGCGCY	1 cut(s)	140
HaeIII	GGCC	4 cut(s)	302, 482, 604, 1202
HapII	CCGG	3 cut(s)	99, 479, 1477
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	2 cut(s)	139, 708
Hin6I	GCGC	2 cut(s)	137, 706
HinP1I	GCGC	2 cut(s)	137, 706
HincII	GTYRAC	1 cut(s)	1210
HindII	GTYRAC	1 cut(s)	1210
HindIII	AAGCTT	1 cut(s)	1520
HinfI	GANTC	6 cut(s)	172, 212, 621, 763, 935, 1231
HpaII	CCGG	3 cut(s)	99, 479, 1477
HphI	GGTGA	7 cut(s)	19, 37, 128, 743, 1031, 1037, 1466
Hpy166II	GTNNAC	6 cut(s)	250, 344, 359, 986, 1210, 1324
Hpy188I	TCNGA	9 cut(s)	39, 93, 128, 396, 420, 568, 916, 959, 1556
Hpy188III	TCNNGA	9 cut(s)	99, 157, 169, 431, 497, 1246, 1339, 1400, 1516
Hpy8I	GTNNAC	6 cut(s)	250, 344, 359, 986, 1210, 1324
Hpy99I	CGWCG	2 cut(s)	71, 136
HpyAV	CCTTC	6 cut(s)	98, 512, 874, 1048, 1243, 1432
HpyCH4III	ACNGT	2 cut(s)	7, 1299
HpyCH4IV	ACGT	2 cut(s)	583, 1260
HpyCH4V	TGCA	6 cut(s)	324, 641, 857, 896, 986, 1153
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 554, 978
HpyF3I	CTNAG	5 cut(s)	272, 549, 803, 968, 1227
HpySE526I	ACGT	2 cut(s)	583, 1260
HspAI	GCGC	2 cut(s)	137, 706
Kpn2I	TCCGGA	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	1396
Kzo9I	GATC	4 cut(s)	39, 128, 652, 1396
LguI	GCTCTTC	1 cut(s)	1547
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	5 cut(s)	412, 461, 605, 608, 841
LweI	GCATC	4 cut(s)	30, 628, 1111, 1519
MaeI	CTAG	4 cut(s)	684, 888, 939, 1484
MaeII	ACGT	2 cut(s)	583, 1260
MaeIII	GTNAC	8 cut(s)	7, 116, 451, 657, 994, 1140, 1299, 1423
MalI	GATC	4 cut(s)	41, 130, 654, 1398
MboI	GATC	4 cut(s)	39, 128, 652, 1396
MboII	GAAGA	6 cut(s)	512, 672, 746, 1064, 1421, 1534
MfeI	CAATTG	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	838, 988
MluCI	AATT	9 cut(s)	187, 284, 374, 627, 676, 778, 1274, 1378, 1457
MluI	ACGCGT	1 cut(s)	1447
MlyI	GAGTC	1 cut(s)	221
MroI	TCCGGA	1 cut(s)	98
MroXI	GAANNNNTTC	3 cut(s)	492, 762, 1071
MseI	TTAA	5 cut(s)	122, 228, 377, 626, 1386
MslI	CAYNNNNRTG	2 cut(s)	245, 846
MspI	CCGG	3 cut(s)	99, 479, 1477
MspR9I	CCNGG	3 cut(s)	113, 305, 479
MunI	CAATTG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	2 cut(s)	113, 305
MvnI	CGCG	1 cut(s)	1449
MwoI	GCNNNNNNNGC	3 cut(s)	299, 554, 978
NciI	CCSGG	1 cut(s)	479
NdeI	CATATG	1 cut(s)	1266
NdeII	GATC	4 cut(s)	39, 128, 652, 1396
NlaIV	GGNNCC	1 cut(s)	483
NmuCI	GTSAC	5 cut(s)	7, 116, 451, 657, 1299
NspI	RCATGY	1 cut(s)	1349
PaeR7I	CTCGAG	1 cut(s)	347
PagI	TCATGA	2 cut(s)	1399, 1515
PceI	AGGCCT	2 cut(s)	604, 1202
PciI	ACATGT	1 cut(s)	1345
PciSI	GCTCTTC	1 cut(s)	1547
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	414
PdmI	GAANNNNTTC	3 cut(s)	492, 762, 1071
PfeI	GAWTC	5 cut(s)	172, 621, 763, 935, 1231
PflMI	CCANNNNNTGG	1 cut(s)	1338
PinAI	ACCGGT	1 cut(s)	1476
PkrI	GCNGC	6 cut(s)	427, 476, 595, 598, 856, 1372
Ple19I	CGATCG	1 cut(s)	131
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PscI	ACATGT	1 cut(s)	1345
PshBI	ATTAAT	1 cut(s)	377
PsiI	TTATAA	1 cut(s)	1239
Psp6I	CCWGG	2 cut(s)	111, 303
PspFI	CCCAGC	2 cut(s)	147, 221
PspGI	CCWGG	2 cut(s)	111, 303
PspN4I	GGNNCC	1 cut(s)	483
PspPI	GGNCC	4 cut(s)	101, 301, 481, 521
PspXI	VCTCGAGB	1 cut(s)	347
PstI	CTGCAG	2 cut(s)	859, 898
PstNI	CAGNNNCTG	1 cut(s)	647
PvuI	CGATCG	1 cut(s)	131
RsaI	GTAC	5 cut(s)	239, 251, 1323, 1364, 1376
RsaNI	GTAC	5 cut(s)	238, 250, 1322, 1363, 1375
RseI	CAYNNNNRTG	2 cut(s)	245, 846
SapI	GCTCTTC	1 cut(s)	1547
SaqAI	TTAA	5 cut(s)	122, 228, 377, 626, 1386
SatI	GCNGC	6 cut(s)	426, 475, 594, 597, 855, 1371
Sau3AI	GATC	4 cut(s)	39, 128, 652, 1396
Sau96I	GGNCC	4 cut(s)	101, 301, 481, 521
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	113, 305, 479
SduI	GDGCHC	2 cut(s)	838, 988
SfaNI	GCATC	4 cut(s)	30, 628, 1111, 1519
SfcI	CTRYAG	2 cut(s)	855, 894
Sfr274I	CTCGAG	1 cut(s)	347
SinI	GGWCC	2 cut(s)	101, 521
SlaI	CTCGAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	2 cut(s)	245, 846
SmlI	CTYRAG	3 cut(s)	347, 429, 558
SmoI	CTYRAG	3 cut(s)	347, 429, 558
Sse9I	AATT	9 cut(s)	187, 284, 374, 627, 676, 778, 1274, 1378, 1457
SseBI	AGGCCT	2 cut(s)	604, 1202
SsiI	CCGC	4 cut(s)	245, 293, 981, 1370
SspI	AATATT	1 cut(s)	1134
SspMI	CTAG	4 cut(s)	684, 888, 939, 1484
StuI	AGGCCT	2 cut(s)	604, 1202
StyD4I	CCNGG	3 cut(s)	111, 303, 477
StyI	CCWWGG	2 cut(s)	216, 1203
TaaI	ACNGT	2 cut(s)	7, 1299
TaiI	ACGT	2 cut(s)	586, 1263
TaqI	TCGA	3 cut(s)	131, 348, 861
TasI	AATT	9 cut(s)	187, 284, 374, 627, 676, 778, 1274, 1378, 1457
TatI	WGTACW	2 cut(s)	237, 1321
TauI	GCSGC	1 cut(s)	1373
TfiI	GAWTC	5 cut(s)	172, 621, 763, 935, 1231
Tru1I	TTAA	5 cut(s)	122, 228, 377, 626, 1386
Tru9I	TTAA	5 cut(s)	122, 228, 377, 626, 1386
TseFI	GTSAC	5 cut(s)	7, 116, 451, 657, 1299
TseI	GCWGC	5 cut(s)	425, 474, 593, 596, 854
Tsp45I	GTSAC	5 cut(s)	7, 116, 451, 657, 1299
TspDTI	ATGAA	5 cut(s)	781, 785, 864, 1253, 1532
TspGWI	ACGGA	1 cut(s)	645
Van91I	CCANNNNNTGG	1 cut(s)	1338
VneI	GTGCAC	1 cut(s)	984
VpaK11BI	GGWCC	2 cut(s)	101, 521
VspI	ATTAAT	1 cut(s)	377
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	1349
XhoI	CTCGAG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	358
XmnI	GAANNNNTTC	3 cut(s)	492, 762, 1071
XspI	CTAG	4 cut(s)	684, 888, 939, 1484

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.