Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Reverse (-)

33802598 .. 33805120

Gene Structure 2523 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1271300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGAGATTTTCAATCCTGATAGATTCTGAAACCGATGCTCATGGGGGTAGTTCTTCTAGTATGAGTACCAGGGACAAGCGAAAGCATGATGCTTTGGAGTTGGATGAAGAATTTGCTAATAACGAAGTGGTTATTTGGCGTGCTAATTTTGAGGAATTCATTCGCTGCCTAAGGCACAAGGCTTGCGTCGAGAATGTGAGAGCACGTCTGGATGACGGAGCTGCACTTGTCTTAAGAGCAATGCTTATGTCAACTAGAACTGCAGAGAAGAAAGTAAAGACGGAAAATTCAGTTCCTGTATCATTCAGTACTATTTATGAGGAGGTGATAAACAGTGAAGCTGGTCGTAATTTGACATGTGATTACGTCAAAGCTTCCCTCAGCCTGTTCTGCAATGAAAGGGATGTAGATGGGGATGAGTCGTATAGTGTTGACTTGAAGAAAATTCTTGAGCTGGCTCAGAATGATGAGGTGGAGTCAATTGTTTTGAAAAGATATGGGAGAGATGCTTATAAAATGTTTAGGCTACTGTCGACTTCAAGTCGTGCACTTGAGATGGATAAGATTTCAGATATGACACTTGTTGAAAAGAAGGAAATTCCCACAATTCTCTATAAGCTGTGGAAGGATGGAGGTAAAGCACTTCCCTGTTATATGTACCACAGATTAGCTGTGACGGGAGCCAGACAGGCACAATTCTTGGTGTGGAAGGTAGACAGGCCCATTGTTTGGAAACATGTTTTAGATGAGATGTTCCACACAGCGCTGAATCTGAGTCTTCGACTGGTGTACGAGGATGACCAAATTAAAGAGGTTCGTAAAAACACACAATGTTATGGTTCTAGTATGTTCAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

286

Amino Acids

32.81

Weight (kDa)

6.13

Isoelectric Point (pI)

33.83

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RNA_pol_Rpc82	PF05645	16 - 150	8e-14	RNA polymerase III subunit RPC82
WHD_POLR3C	PF22536	158 - 210	1.2e-08	POLR3C, C-terminal winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	513
AccB7I	CCANNNNNTGG	1 cut(s)	729
AccI	GTMKAC	2 cut(s)	533, 714
AcsI	RAATTY	5 cut(s)	110, 155, 286, 444, 597
AfaI	GTAC	4 cut(s)	67, 310, 659, 791
AfeI	AGCGCT	1 cut(s)	765
AfiI	CCNNNNNNNGG	1 cut(s)	729
AflII	CTTAAG	1 cut(s)	232
AflIII	ACRYGT	2 cut(s)	356, 736
AgsI	TTSAA	5 cut(s)	12, 439, 490, 540, 587
AhdI	GACNNNNNGTC	1 cut(s)	540
AjiI	CACGTC	1 cut(s)	206
AjnI	CCWGG	1 cut(s)	68
AluBI	AGCT	6 cut(s)	221, 341, 374, 454, 619, 671
AluI	AGCT	6 cut(s)	221, 341, 374, 454, 619, 671
Alw21I	GWGCWC	2 cut(s)	205, 550
Alw44I	GTGCAC	1 cut(s)	546
AlwNI	CAGNNNCTG	1 cut(s)	296
Aor51HI	AGCGCT	1 cut(s)	765
AoxI	GGCC	1 cut(s)	719
ApaLI	GTGCAC	1 cut(s)	546
ApeKI	GCWGC	2 cut(s)	165, 221
ApoI	RAATTY	5 cut(s)	110, 155, 286, 444, 597
Asp700I	GAANNNNTTC	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	766
AspS9I	GGNCC	1 cut(s)	720
AsuHPI	GGTGA	1 cut(s)	337
AxyI	CCTNAGG	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	550
BbsI	GAAGAC	1 cut(s)	770
Bbv12I	GWGCWC	2 cut(s)	205, 550
BbvCI	CCTCAGC	1 cut(s)	380
BbvI	GCAGC	2 cut(s)	152, 208
BccI	CCATC	3 cut(s)	404, 550, 623
BciT130I	CCWGG	1 cut(s)	70
BfaI	CTAG	3 cut(s)	57, 255, 843
BfmI	CTRYAG	1 cut(s)	261
BfoI	RGCGCY	1 cut(s)	767
BfrI	CTTAAG	1 cut(s)	232
BglI	GCCNNNNNGGC	1 cut(s)	689
BisI	GCNGC	2 cut(s)	166, 222
BlsI	GCNGC	2 cut(s)	167, 223
BmcAI	AGTACT	1 cut(s)	310
Bme1390I	CCNGG	1 cut(s)	70
BmeRI	GACNNNNNGTC	1 cut(s)	540
BmgBI	CACGTC	1 cut(s)	206
BmgT120I	GGNCC	1 cut(s)	720
BmiI	GGNNCC	1 cut(s)	682
BmrFI	CCNGG	1 cut(s)	70
BmsI	GCATC	3 cut(s)	25, 79, 496
BpiI	GAAGAC	1 cut(s)	770
Bpu10I	CCTNAGC	1 cut(s)	380
BpuEI	CTTGAG	2 cut(s)	470, 572
BsaJI	CCNNGG	1 cut(s)	69
Bsc4I	CCNNNNNNNGG	1 cut(s)	729
Bse1I	ACTGG	1 cut(s)	789
Bse21I	CCTNAGG	1 cut(s)	170
Bse3DI	GCAATG	2 cut(s)	246, 400
BseBI	CCWGG	1 cut(s)	70
BseDI	CCNNGG	1 cut(s)	69
BseGI	GGATG	6 cut(s)	109, 217, 409, 421, 634, 802
BseLI	CCNNNNNNNGG	1 cut(s)	729
BseMI	GCAATG	2 cut(s)	246, 400
BseMII	CTCAG	3 cut(s)	394, 473, 764
BseNI	ACTGG	1 cut(s)	789
BseRI	GAGGAG	1 cut(s)	335
BseSI	GKGCMC	1 cut(s)	550
BseXI	GCAGC	2 cut(s)	152, 208
BsgI	GTGCAG	1 cut(s)	207
BshFI	GGCC	1 cut(s)	721
BsiHKAI	GWGCWC	2 cut(s)	205, 550
BslFI	GGGAC	1 cut(s)	86
BslI	CCNNNNNNNGG	1 cut(s)	729
BsmFI	GGGAC	1 cut(s)	86
BsnI	GGCC	1 cut(s)	721
Bsp1286I	GDGCHC	2 cut(s)	205, 550
BspANI	GGCC	1 cut(s)	721
BspCNI	CTCAG	3 cut(s)	393, 472, 765
BspLI	GGNNCC	1 cut(s)	682
BspMAI	CTGCAG	1 cut(s)	265
BspTI	CTTAAG	1 cut(s)	232
BsrDI	GCAATG	2 cut(s)	246, 400
BsrI	ACTGG	1 cut(s)	789
BssECI	CCNNGG	1 cut(s)	69
Bst2UI	CCWGG	1 cut(s)	70
Bst4CI	ACNGT	2 cut(s)	335, 531
BstAFI	CTTAAG	1 cut(s)	232
BstC8I	GCNNGC	3 cut(s)	141, 184, 456
BstDEI	CTNAG	4 cut(s)	170, 380, 459, 773
BstF5I	GGATG	6 cut(s)	109, 217, 409, 421, 634, 802
BstH2I	RGCGCY	1 cut(s)	767
BstHHI	GCGC	1 cut(s)	766
BstMWI	GCNNNNNNNGC	2 cut(s)	390, 689
BstNI	CCWGG	1 cut(s)	70
BstNSI	RCATGY	2 cut(s)	360, 740
BstSCI	CCNGG	1 cut(s)	68
BstSFI	CTRYAG	1 cut(s)	261
BstSLI	GKGCMC	1 cut(s)	550
BstV1I	GCAGC	2 cut(s)	152, 208
BstV2I	GAAGAC	1 cut(s)	770
Bsu36I	CCTNAGG	1 cut(s)	170
BsuRI	GGCC	1 cut(s)	721
BtrI	CACGTC	1 cut(s)	206
BtsCI	GGATG	6 cut(s)	109, 217, 409, 421, 634, 802
BtsIMutI	CAGTG	1 cut(s)	340
Cac8I	GCNNGC	3 cut(s)	141, 184, 456
CaiI	CAGNNNCTG	1 cut(s)	296
CfoI	GCGC	1 cut(s)	766
Cfr13I	GGNCC	1 cut(s)	720
CseI	GACGC	1 cut(s)	175
Csp6I	GTAC	4 cut(s)	66, 309, 658, 790
CviAII	CATG	4 cut(s)	41, 86, 357, 737
CviQI	GTAC	4 cut(s)	66, 309, 658, 790
DdeI	CTNAG	4 cut(s)	170, 380, 459, 773
DriI	GACNNNNNGTC	1 cut(s)	540
Eam1105I	GACNNNNNGTC	1 cut(s)	540
Eco47III	AGCGCT	1 cut(s)	765
Eco81I	CCTNAGG	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	155
EcoRII	CCWGG	1 cut(s)	68
FaeI	CATG	4 cut(s)	44, 89, 360, 740
FaqI	GGGAC	1 cut(s)	86
FatI	CATG	4 cut(s)	40, 85, 356, 736
FblI	GTMKAC	2 cut(s)	533, 714
Fnu4HI	GCNGC	2 cut(s)	166, 222
FokI	GGATG	6 cut(s)	116, 224, 416, 428, 641, 809
Fsp4HI	GCNGC	2 cut(s)	166, 222
FspBI	CTAG	3 cut(s)	57, 255, 843
GlaI	GCGC	1 cut(s)	765
GluI	GCNGC	2 cut(s)	166, 222
HaeII	RGCGCY	1 cut(s)	767
HaeIII	GGCC	1 cut(s)	721
HgaI	GACGC	1 cut(s)	175
HhaI	GCGC	1 cut(s)	766
Hin1II	CATG	4 cut(s)	44, 89, 360, 740
Hin6I	GCGC	1 cut(s)	764
HinP1I	GCGC	1 cut(s)	764
HincII	GTYRAC	3 cut(s)	252, 433, 534
HindII	GTYRAC	3 cut(s)	252, 433, 534
HindIII	AAGCTT	1 cut(s)	372
HinfI	GANTC	5 cut(s)	23, 419, 476, 769, 775
HphI	GGTGA	1 cut(s)	337
Hpy166II	GTNNAC	6 cut(s)	252, 433, 534, 548, 715, 790
Hpy188I	TCNGA	4 cut(s)	28, 462, 571, 774
Hpy188III	TCNNGA	4 cut(s)	16, 190, 209, 449
Hpy8I	GTNNAC	6 cut(s)	252, 433, 534, 548, 715, 790
Hpy99I	CGWCG	1 cut(s)	191
HpyAV	CCTTC	3 cut(s)	586, 619, 703
HpyCH4III	ACNGT	2 cut(s)	335, 531
HpyCH4IV	ACGT	2 cut(s)	205, 366
HpyCH4V	TGCA	4 cut(s)	224, 263, 393, 548
HpyF10VI	GCNNNNNNNGC	2 cut(s)	390, 689
HpyF3I	CTNAG	4 cut(s)	170, 380, 459, 773
HpySE526I	ACGT	2 cut(s)	205, 366
Hsp92II	CATG	4 cut(s)	44, 89, 360, 740
HspAI	GCGC	1 cut(s)	764
LmnI	GCTCC	2 cut(s)	218, 680
Lsp1109I	GCAGC	2 cut(s)	152, 208
LweI	GCATC	3 cut(s)	25, 79, 496
MaeI	CTAG	3 cut(s)	57, 255, 843
MaeII	ACGT	2 cut(s)	205, 366
MaeIII	GTNAC	1 cut(s)	673
MboII	GAAGA	5 cut(s)	45, 119, 280, 451, 770
MfeI	CAATTG	1 cut(s)	480
MhlI	GDGCHC	2 cut(s)	205, 550
MlyI	GAGTC	3 cut(s)	428, 485, 784
MmeI	TCCRAC	1 cut(s)	81
MnlI	CCTC	8 cut(s)	145, 313, 316, 389, 463, 626, 787, 805
MroXI	GAANNNNTTC	1 cut(s)	159
MseI	TTAA	2 cut(s)	233, 807
MspCI	CTTAAG	1 cut(s)	232
MspR9I	CCNGG	1 cut(s)	70
MunI	CAATTG	1 cut(s)	480
MvaI	CCWGG	1 cut(s)	70
MwoI	GCNNNNNNNGC	2 cut(s)	390, 689
NlaIII	CATG	4 cut(s)	44, 89, 360, 740
NlaIV	GGNNCC	1 cut(s)	682
NmuCI	GTSAC	1 cut(s)	673
NspI	RCATGY	2 cut(s)	360, 740
PciI	ACATGT	2 cut(s)	356, 736
PdmI	GAANNNNTTC	1 cut(s)	159
PfeI	GAWTC	2 cut(s)	23, 769
PflMI	CCANNNNNTGG	1 cut(s)	729
PkrI	GCNGC	2 cut(s)	167, 223
PleI	GAGTC	3 cut(s)	427, 484, 783
PpsI	GAGTC	3 cut(s)	427, 484, 783
PscI	ACATGT	2 cut(s)	356, 736
PsiI	TTATAA	1 cut(s)	513
Psp6I	CCWGG	1 cut(s)	68
PspGI	CCWGG	1 cut(s)	68
PspN4I	GGNNCC	1 cut(s)	682
PspPI	GGNCC	1 cut(s)	720
PstI	CTGCAG	1 cut(s)	265
PstNI	CAGNNNCTG	1 cut(s)	296
RsaI	GTAC	4 cut(s)	67, 310, 659, 791
RsaNI	GTAC	4 cut(s)	66, 309, 658, 790
SalI	GTCGAC	1 cut(s)	532
SaqAI	TTAA	2 cut(s)	233, 807
SatI	GCNGC	2 cut(s)	166, 222
Sau96I	GGNCC	1 cut(s)	720
ScaI	AGTACT	1 cut(s)	310
SchI	GAGTC	3 cut(s)	428, 485, 784
ScrFI	CCNGG	1 cut(s)	70
SduI	GDGCHC	2 cut(s)	205, 550
SfaNI	GCATC	3 cut(s)	25, 79, 496
SfcI	CTRYAG	1 cut(s)	261
SmlI	CTYRAG	3 cut(s)	232, 449, 551
SmoI	CTYRAG	3 cut(s)	232, 449, 551
SspMI	CTAG	3 cut(s)	57, 255, 843
StyD4I	CCNGG	1 cut(s)	68
TaaI	ACNGT	2 cut(s)	335, 531
TaiI	ACGT	2 cut(s)	208, 369
TaqI	TCGA	3 cut(s)	189, 533, 781
TatI	WGTACW	1 cut(s)	308
TfiI	GAWTC	2 cut(s)	23, 769
Tru1I	TTAA	2 cut(s)	233, 807
Tru9I	TTAA	2 cut(s)	233, 807
TscAI	CASTG	1 cut(s)	340
TseFI	GTSAC	1 cut(s)	673
TseI	GCWGC	2 cut(s)	165, 221
Tsp45I	GTSAC	1 cut(s)	673
TspDTI	ATGAA	3 cut(s)	120, 148, 411
TspGWI	ACGGA	2 cut(s)	231, 296
TspRI	CASTG	1 cut(s)	340
Van91I	CCANNNNNTGG	1 cut(s)	729
Vha464I	CTTAAG	1 cut(s)	232
VneI	GTGCAC	1 cut(s)	546
XapI	RAATTY	5 cut(s)	110, 155, 286, 444, 597
XceI	RCATGY	2 cut(s)	360, 740
XmiI	GTMKAC	2 cut(s)	533, 714
XmnI	GAANNNNTTC	1 cut(s)	159
XspI	CTAG	3 cut(s)	57, 255, 843
ZrmI	AGTACT	1 cut(s)	310

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.