Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Reverse (-)

3571606 .. 3576928

Gene Structure 5323 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00281230.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1611 bp

ATGACGGTGACTAACAGCGGCATCCAATACGCCGTTCAGATCATCACCAAACACTTCGGCAACCTCGTCGCTAAAGTATGCGAAACCCTTCTGAAATCCGGACCGTTAAACCTGGGCGCTCTGATCCGATCGACGGCGCTCACTCCCCAGCAAGTCAAGAACTCTCTCCTGATTCTGGTCCAGCACAATTGCGTCCAGCCCTTTACCCAAGAGTCCAAGGCTGGGCTTAAAGTTCAGTACATTGCGGTGTACGATAACATACTCCATCGACTTAGGTTTGCGAAGTTTCTGGCGGTTGTGGCCCAGGAGCTTGATGATGATTGCAAACAACTTCTTGCTGGTTTACTTGAGCATGGTAGACTTACACAGCAACAGTTAATGGACAGAGCCAATCAGAAATCCAAATCAAATAGCAGTCAAGTTCAGAATGCTGCTCAAGATAACTTTGTTAGACTTGTGACTGCTCATTTTGTTGAACGCTGCCCGGCCCCTGAACCACTTCTTGAAGAAGCACCTGAACAAGAAGGTCCAAAGAAGCCACGCTCTAAATCTGCTAAGATGGCTCAAGTATCAGAGACCATAGAACAACGTGTTCTAGCAGCAGCAAGGCCTATGGAAGCAATAAGATTTTTAATTACGACAGATCCAGAAACTGATGATCCATCACAAAAAAGTGAGAATAATTCCTCTAGTATGAGTGTTGGGGAGAAGCGCAAGTTTGATGATTTGGATATTGGTGAAGAACATGGGTCCAATGATAAGGAAGTGATACTTTGGCGTGCTAATTTTGAGCAGTTCATTCGTTGTCTAAGGCATAAGGCTTGTGTTGAGAATGTTAGAGCACGACATGACGATAGAGCTGCAGTTGTGTTAAGAGCTGTGCTGAAGGCAACTAGAATGCAGGAGACCAAAGTGAAAACAGATTACTCAGTTCCTTTAAAGCTGGATGCCATTTATACTGAGGTGATAGATAGTGCAGCCGGCCGTAATTGGACCCAGAAACATGTCAAAGCTTCCCTCAGCTTGTTGTGCGGTGAACCTCCTGTAAGAGGAGGATATGAGGATGAGGGTGAGGGTGAGGATGGGGATGTGCCATATAGCATTGACTTGAAGAAAATTATAGAACTGCTTCAGAGTGATGAGGTGGAGTCGATTGTTTCAAAAAGATATGGAAATGATGCTTATAGAATATTTAGGTTACTGAGCCAGTCAAAAGCTGGTCGGTTTTTTGAGACAGATAAGATATCAGACGATGCCCTTGTTGACAAAAAGGAAACACCTAAGATTCTCTATAAGCTCTGGAAGGATGACTACGTTCATATGGAGAAATTATCATTGACAACAGCTAAACAGTCACAAGTCATGGTGTGGAAAGTGCACAAGTCCATTGTTTGGGAACATGTTTTAGATGAGATGTACCATGCGGCGTACAATTTGGTTAAGCGATATGATCATGAGAGGGAAGAGAATAAGGAGGTTACAAATACCCCGAAGGAGAAACGCGTCGGTGAATTAGAGAAAAAAGCCAACCGGTTTCTAGGTGTCAGGAAAATCATGGCATTATCCCTCGTGAAGCTTGATGATGCTCTCATGCTCTTCCATGACTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

536

Amino Acids

60.92

Weight (kDa)

7.24

Isoelectric Point (pI)

35.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_9	PF08221	10 - 66	2.4e-18	RNA polymerase III subunit RPC82 helix-turn-helix domain
RNA_pol_Rpc82	PF05645	147 - 314	1.5e-18	RNA polymerase III subunit RPC82
WHD_POLR3C	PF22536	382 - 449	3.7e-12	POLR3C, C-terminal winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1392
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	1 cut(s)	1503
AccIII	TCCGGA	1 cut(s)	98
AciI	CCGC	5 cut(s)	18, 245, 293, 1032, 1424
AclWI	GGATC	3 cut(s)	118, 638, 653
AcoI	YGGCCR	1 cut(s)	982
AcuI	CTGAAG	2 cut(s)	905, 1115
AfaI	GTAC	4 cut(s)	239, 251, 1418, 1430
AfiI	CCNNNNNNNGG	5 cut(s)	133, 175, 222, 1049, 1392
AflIII	ACRYGT	4 cut(s)	589, 1003, 1399, 1501
AgeI	ACCGGT	1 cut(s)	1530
AgsI	TTSAA	4 cut(s)	476, 506, 1111, 1161
AjnI	CCWGG	2 cut(s)	111, 303
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
Alw21I	GWGCWC	2 cut(s)	844, 1380
Alw26I	GTCTC	3 cut(s)	569, 899, 1226
Alw44I	GTGCAC	1 cut(s)	1376
AlwI	GGATC	3 cut(s)	118, 638, 653
AlwNI	CAGNNNCTG	1 cut(s)	653
Aor13HI	TCCGGA	1 cut(s)	98
AoxI	GGCC	4 cut(s)	300, 486, 608, 982
ApaLI	GTGCAC	1 cut(s)	1376
ApeKI	GCWGC	6 cut(s)	431, 480, 599, 602, 860, 977
AsiGI	ACCGGT	1 cut(s)	1530
Asp700I	GAANNNNTTC	3 cut(s)	87, 498, 1128
AspLEI	GCGC	3 cut(s)	119, 139, 714
AspS9I	GGNCC	7 cut(s)	101, 178, 301, 487, 527, 750, 993
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	8 cut(s)	19, 37, 749, 976, 1046, 1082, 1088, 1520
AvaII	GGWCC	5 cut(s)	101, 178, 527, 750, 993
BaeGI	GKGCMC	1 cut(s)	1380
BarI	GAAGNNNNNNTAC	2 cut(s)	1295, 1327
BauI	CACGAG	1 cut(s)	1568
Bbv12I	GWGCWC	2 cut(s)	844, 1380
BbvCI	CCTCAGC	1 cut(s)	1019
BbvI	GCAGC	6 cut(s)	418, 467, 611, 614, 847, 989
BccI	CCATC	4 cut(s)	273, 553, 670, 1076
BceAI	ACGGC	3 cut(s)	17, 150, 969
BcgI	CGANNNNNNTGC	6 cut(s)	49, 83, 782, 816, 842, 876
BciT130I	CCWGG	2 cut(s)	113, 305
BclI	TGATCA	1 cut(s)	1450
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	3 cut(s)	569, 899, 1226
BfaI	CTAG	4 cut(s)	596, 690, 894, 1538
BfmI	CTRYAG	1 cut(s)	861
BfoI	RGCGCY	2 cut(s)	120, 140
BisI	GCNGC	8 cut(s)	19, 432, 481, 600, 603, 861, 978, 1425
BlsI	GCNGC	8 cut(s)	20, 433, 482, 601, 604, 862, 979, 1426
Bme1390I	CCNGG	3 cut(s)	113, 305, 485
Bme18I	GGWCC	5 cut(s)	101, 178, 527, 750, 993
BmgT120I	GGNCC	7 cut(s)	101, 178, 301, 487, 527, 750, 993
BmiI	GGNNCC	3 cut(s)	489, 751, 995
BmrFI	CCNGG	3 cut(s)	113, 305, 485
BmsI	GCATC	5 cut(s)	30, 937, 1168, 1243, 1573
Bpu10I	CCTNAGC	1 cut(s)	1019
BpuEI	CTTGAG	3 cut(s)	368, 420, 549
BpuMI	CCSGG	1 cut(s)	485
BsaI	GGTCTC	2 cut(s)	569, 899
BsaJI	CCNNGG	3 cut(s)	112, 216, 303
BsaWI	WCCGGW	2 cut(s)	98, 1530
Bsc4I	CCNNNNNNNGG	5 cut(s)	133, 175, 222, 1049, 1392
Bse118I	RCCGGY	2 cut(s)	980, 1530
Bse1I	ACTGG	1 cut(s)	1207
Bse3DI	GCAATG	1 cut(s)	240
BseAI	TCCGGA	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	113, 305
BseDI	CCNNGG	3 cut(s)	112, 216, 303
BseGI	GGATG	6 cut(s)	21, 952, 1069, 1087, 1093, 1312
BseLI	CCNNNNNNNGG	5 cut(s)	133, 175, 222, 1049, 1392
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	4 cut(s)	942, 951, 1033, 1193
BseNI	ACTGG	1 cut(s)	1207
BseRI	GAGGAG	1 cut(s)	1065
BseSI	GKGCMC	1 cut(s)	1380
BseX3I	CGGCCG	1 cut(s)	982
BseXI	GCAGC	6 cut(s)	418, 467, 611, 614, 847, 989
BseYI	CCCAGC	2 cut(s)	147, 221
BsgI	GTGCAG	1 cut(s)	996
Bsh1236I	CGCG	1 cut(s)	1503
Bsh1285I	CGRYCG	2 cut(s)	131, 985
BshFI	GGCC	4 cut(s)	302, 488, 610, 984
BshTI	ACCGGT	1 cut(s)	1530
BsiEI	CGRYCG	2 cut(s)	131, 985
BsiHKAI	GWGCWC	2 cut(s)	844, 1380
BsiSI	CCGG	4 cut(s)	99, 485, 981, 1531
BslI	CCNNNNNNNGG	5 cut(s)	133, 175, 222, 1049, 1392
BsmAI	GTCTC	3 cut(s)	569, 899, 1226
BsmI	GAATGC	2 cut(s)	433, 903
BsnI	GGCC	4 cut(s)	302, 488, 610, 984
Bso31I	GGTCTC	2 cut(s)	569, 899
Bsp1286I	GDGCHC	2 cut(s)	844, 1380
Bsp13I	TCCGGA	1 cut(s)	98
Bsp143I	GATC	6 cut(s)	39, 123, 128, 643, 658, 1450
BspACI	CCGC	5 cut(s)	18, 245, 293, 1032, 1424
BspANI	GGCC	4 cut(s)	302, 488, 610, 984
BspCNI	CTCAG	4 cut(s)	941, 952, 1032, 1194
BspEI	TCCGGA	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	1503
BspHI	TCATGA	1 cut(s)	1453
BspLI	GGNNCC	3 cut(s)	489, 751, 995
BspMAI	CTGCAG	1 cut(s)	865
BspPI	GGATC	3 cut(s)	118, 638, 653
BspQI	GCTCTTC	1 cut(s)	1601
BspTNI	GGTCTC	2 cut(s)	569, 899
BsrDI	GCAATG	1 cut(s)	240
BsrFI	RCCGGY	2 cut(s)	980, 1530
BsrI	ACTGG	1 cut(s)	1207
BssAI	RCCGGY	2 cut(s)	980, 1530
BssECI	CCNNGG	3 cut(s)	112, 216, 303
BssMI	GATC	6 cut(s)	39, 123, 128, 643, 658, 1450
BssSI	CACGAG	1 cut(s)	1568
BssT1I	CCWWGG	1 cut(s)	216
Bst2BI	CACGAG	1 cut(s)	1568
Bst2UI	CCWGG	2 cut(s)	113, 305
Bst4CI	ACNGT	4 cut(s)	7, 105, 375, 1353
Bst6I	CTCTTC	2 cut(s)	1458, 1601
BstC8I	GCNNGC	2 cut(s)	780, 982
BstDEI	CTNAG	8 cut(s)	272, 555, 809, 928, 960, 1019, 1202, 1281
BstENI	CCTNNNNNAGG	1 cut(s)	1047
BstF5I	GGATG	6 cut(s)	21, 952, 1069, 1087, 1093, 1312
BstFNI	CGCG	1 cut(s)	1503
BstH2I	RGCGCY	2 cut(s)	120, 140
BstHHI	GCGC	3 cut(s)	119, 139, 714
BstKTI	GATC	6 cut(s)	42, 126, 131, 646, 661, 1453
BstMAI	GTCTC	3 cut(s)	569, 899, 1226
BstMBI	GATC	6 cut(s)	39, 123, 128, 643, 658, 1450
BstMCI	CGRYCG	2 cut(s)	131, 985
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 560, 1029
BstNI	CCWGG	2 cut(s)	113, 305
BstNSI	RCATGY	2 cut(s)	1007, 1403
BstSCI	CCNGG	3 cut(s)	111, 303, 483
BstSFI	CTRYAG	1 cut(s)	861
BstSLI	GKGCMC	1 cut(s)	1380
BstUI	CGCG	1 cut(s)	1503
BstV1I	GCAGC	6 cut(s)	418, 467, 611, 614, 847, 989
BstX2I	RGATCY	1 cut(s)	643
BstYI	RGATCY	1 cut(s)	643
BstZI	CGGCCG	1 cut(s)	982
BsuRI	GGCC	4 cut(s)	302, 488, 610, 984
BtsCI	GGATG	6 cut(s)	21, 952, 1069, 1087, 1093, 1312
Cac8I	GCNNGC	2 cut(s)	780, 982
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	1 cut(s)	1453
CfoI	GCGC	3 cut(s)	119, 139, 714
Cfr10I	RCCGGY	2 cut(s)	980, 1530
Cfr13I	GGNCC	7 cut(s)	101, 178, 301, 487, 527, 750, 993
CpoI	CGGWCCG	1 cut(s)	101
CseI	GACGC	2 cut(s)	181, 1492
Csp6I	GTAC	4 cut(s)	238, 250, 1417, 1429
CspAI	ACCGGT	1 cut(s)	1530
CspI	CGGWCCG	1 cut(s)	101
CviQI	GTAC	4 cut(s)	238, 250, 1417, 1429
DdeI	CTNAG	8 cut(s)	272, 555, 809, 928, 960, 1019, 1202, 1281
DpnI	GATC	6 cut(s)	41, 125, 130, 645, 660, 1452
DpnII	GATC	6 cut(s)	39, 123, 128, 643, 658, 1450
DraI	TTTAAA	1 cut(s)	939
EaeI	YGGCCR	1 cut(s)	982
EagI	CGGCCG	1 cut(s)	982
Eam1104I	CTCTTC	2 cut(s)	1458, 1601
EarI	CTCTTC	2 cut(s)	1458, 1601
EclXI	CGGCCG	1 cut(s)	982
Eco130I	CCWWGG	1 cut(s)	216
Eco147I	AGGCCT	1 cut(s)	610
Eco31I	GGTCTC	2 cut(s)	569, 899
Eco32I	GATATC	1 cut(s)	1245
Eco47I	GGWCC	5 cut(s)	101, 178, 527, 750, 993
Eco52I	CGGCCG	1 cut(s)	982
Eco57I	CTGAAG	2 cut(s)	905, 1115
EcoNI	CCTNNNNNAGG	1 cut(s)	1047
EcoRII	CCWGG	2 cut(s)	111, 303
EcoRV	GATATC	1 cut(s)	1245
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FauNDI	CATATG	1 cut(s)	1320
FbaI	TGATCA	1 cut(s)	1450
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	8 cut(s)	19, 432, 481, 600, 603, 861, 978, 1425
FokI	GGATG	6 cut(s)	8, 959, 1076, 1094, 1100, 1319
Fsp4HI	GCNGC	8 cut(s)	19, 432, 481, 600, 603, 861, 978, 1425
FspBI	CTAG	4 cut(s)	596, 690, 894, 1538
GlaI	GCGC	3 cut(s)	118, 138, 713
GluI	GCNGC	8 cut(s)	19, 432, 481, 600, 603, 861, 978, 1425
GsaI	CCCAGC	2 cut(s)	151, 225
HaeII	RGCGCY	2 cut(s)	120, 140
HaeIII	GGCC	4 cut(s)	302, 488, 610, 984
HapII	CCGG	4 cut(s)	99, 485, 981, 1531
HgaI	GACGC	2 cut(s)	181, 1492
HhaI	GCGC	3 cut(s)	119, 139, 714
Hin6I	GCGC	3 cut(s)	117, 137, 712
HinP1I	GCGC	3 cut(s)	117, 137, 712
HincII	GTYRAC	1 cut(s)	1264
HindII	GTYRAC	1 cut(s)	1264
HindIII	AAGCTT	2 cut(s)	1011, 1574
HinfI	GANTC	4 cut(s)	172, 212, 1148, 1285
HpaII	CCGG	4 cut(s)	99, 485, 981, 1531
HphI	GGTGA	8 cut(s)	19, 37, 749, 976, 1046, 1082, 1088, 1520
Hpy166II	GTNNAC	6 cut(s)	250, 344, 359, 1037, 1264, 1378
Hpy188I	TCNGA	9 cut(s)	39, 93, 123, 128, 396, 426, 574, 1134, 1249
Hpy8I	GTNNAC	6 cut(s)	250, 344, 359, 1037, 1264, 1378
Hpy99I	CGWCG	3 cut(s)	71, 136, 1508
HpyAV	CCTTC	5 cut(s)	98, 518, 880, 1297, 1486
HpyCH4III	ACNGT	4 cut(s)	7, 105, 375, 1353
HpyCH4IV	ACGT	2 cut(s)	589, 1314
HpyCH4V	TGCA	5 cut(s)	324, 863, 901, 977, 1378
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 560, 1029
HpyF3I	CTNAG	8 cut(s)	272, 555, 809, 928, 960, 1019, 1202, 1281
HpySE526I	ACGT	2 cut(s)	589, 1314
HspAI	GCGC	3 cut(s)	117, 137, 712
Kpn2I	TCCGGA	1 cut(s)	98
KroI	GCCGGC	1 cut(s)	980
KroNI	GCCGGC	1 cut(s)	982
Ksp22I	TGATCA	1 cut(s)	1450
Kzo9I	GATC	6 cut(s)	39, 123, 128, 643, 658, 1450
LguI	GCTCTTC	1 cut(s)	1601
LmnI	GCTCC	1 cut(s)	307
Lsp1109I	GCAGC	6 cut(s)	418, 467, 611, 614, 847, 989
LweI	GCATC	5 cut(s)	30, 937, 1168, 1243, 1573
MaeI	CTAG	4 cut(s)	596, 690, 894, 1538
MaeII	ACGT	2 cut(s)	589, 1314
MaeIII	GTNAC	5 cut(s)	7, 457, 1197, 1353, 1477
MalI	GATC	6 cut(s)	41, 125, 130, 645, 660, 1452
MboI	GATC	6 cut(s)	39, 123, 128, 643, 658, 1450
MboII	GAAGA	5 cut(s)	518, 752, 1123, 1475, 1588
MfeI	CAATTG	1 cut(s)	187
MflI	RGATCY	1 cut(s)	643
MhlI	GDGCHC	2 cut(s)	844, 1380
MluCI	AATT	9 cut(s)	187, 633, 682, 784, 988, 1116, 1328, 1432, 1511
MluI	ACGCGT	1 cut(s)	1501
MlyI	GAGTC	2 cut(s)	221, 1157
MroI	TCCGGA	1 cut(s)	98
MroNI	GCCGGC	1 cut(s)	980
MroXI	GAANNNNTTC	3 cut(s)	87, 498, 1128
MseI	TTAA	7 cut(s)	107, 228, 377, 632, 872, 938, 1440
MslI	CAYNNNNRTG	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	4 cut(s)	99, 485, 981, 1531
MspR9I	CCNGG	3 cut(s)	113, 305, 485
MunI	CAATTG	1 cut(s)	187
Mva1269I	GAATGC	2 cut(s)	433, 903
MvaI	CCWGG	2 cut(s)	113, 305
MvnI	CGCG	1 cut(s)	1503
MwoI	GCNNNNNNNGC	3 cut(s)	299, 560, 1029
NaeI	GCCGGC	1 cut(s)	982
NciI	CCSGG	1 cut(s)	485
NdeI	CATATG	1 cut(s)	1320
NdeII	GATC	6 cut(s)	39, 123, 128, 643, 658, 1450
NgoMIV	GCCGGC	1 cut(s)	980
NlaIV	GGNNCC	3 cut(s)	489, 751, 995
NmuCI	GTSAC	3 cut(s)	7, 457, 1353
NspI	RCATGY	2 cut(s)	1007, 1403
PagI	TCATGA	1 cut(s)	1453
PceI	AGGCCT	1 cut(s)	610
PciI	ACATGT	2 cut(s)	1003, 1399
PciSI	GCTCTTC	1 cut(s)	1601
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	2 cut(s)	433, 903
PdiI	GCCGGC	1 cut(s)	982
PdmI	GAANNNNTTC	3 cut(s)	87, 498, 1128
PfeI	GAWTC	2 cut(s)	172, 1285
PflMI	CCANNNNNTGG	1 cut(s)	1392
PinAI	ACCGGT	1 cut(s)	1530
PkrI	GCNGC	8 cut(s)	20, 433, 482, 601, 604, 862, 979, 1426
Ple19I	CGATCG	1 cut(s)	131
PleI	GAGTC	2 cut(s)	220, 1156
PpsI	GAGTC	2 cut(s)	220, 1156
PscI	ACATGT	2 cut(s)	1003, 1399
Psp6I	CCWGG	2 cut(s)	111, 303
PspFI	CCCAGC	2 cut(s)	147, 221
PspGI	CCWGG	2 cut(s)	111, 303
PspN4I	GGNNCC	3 cut(s)	489, 751, 995
PspPI	GGNCC	7 cut(s)	101, 178, 301, 487, 527, 750, 993
PstI	CTGCAG	1 cut(s)	865
PstNI	CAGNNNCTG	1 cut(s)	653
PsuI	RGATCY	1 cut(s)	643
PvuI	CGATCG	1 cut(s)	131
RsaI	GTAC	4 cut(s)	239, 251, 1418, 1430
RsaNI	GTAC	4 cut(s)	238, 250, 1417, 1429
RseI	CAYNNNNRTG	1 cut(s)	245
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	1601
SaqAI	TTAA	7 cut(s)	107, 228, 377, 632, 872, 938, 1440
SatI	GCNGC	8 cut(s)	19, 432, 481, 600, 603, 861, 978, 1425
Sau3AI	GATC	6 cut(s)	39, 123, 128, 643, 658, 1450
Sau96I	GGNCC	7 cut(s)	101, 178, 301, 487, 527, 750, 993
SchI	GAGTC	2 cut(s)	221, 1157
ScrFI	CCNGG	3 cut(s)	113, 305, 485
SduI	GDGCHC	2 cut(s)	844, 1380
SfaNI	GCATC	5 cut(s)	30, 937, 1168, 1243, 1573
SfcI	CTRYAG	1 cut(s)	861
SinI	GGWCC	5 cut(s)	101, 178, 527, 750, 993
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	3 cut(s)	347, 435, 564
SmoI	CTYRAG	3 cut(s)	347, 435, 564
Sse9I	AATT	9 cut(s)	187, 633, 682, 784, 988, 1116, 1328, 1432, 1511
SseBI	AGGCCT	1 cut(s)	610
SsiI	CCGC	5 cut(s)	18, 245, 293, 1032, 1424
SspI	AATATT	1 cut(s)	1191
SspMI	CTAG	4 cut(s)	596, 690, 894, 1538
StuI	AGGCCT	1 cut(s)	610
StyD4I	CCNGG	3 cut(s)	111, 303, 483
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	4 cut(s)	7, 105, 375, 1353
TaiI	ACGT	2 cut(s)	592, 1317
TaqI	TCGA	3 cut(s)	131, 268, 1151
TasI	AATT	9 cut(s)	187, 633, 682, 784, 988, 1116, 1328, 1432, 1511
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	2 cut(s)	21, 1427
TfiI	GAWTC	2 cut(s)	172, 1285
Tru1I	TTAA	7 cut(s)	107, 228, 377, 632, 872, 938, 1440
Tru9I	TTAA	7 cut(s)	107, 228, 377, 632, 872, 938, 1440
TseFI	GTSAC	3 cut(s)	7, 457, 1353
TseI	GCWGC	6 cut(s)	431, 480, 599, 602, 860, 977
Tsp45I	GTSAC	3 cut(s)	7, 457, 1353
TspDTI	ATGAA	2 cut(s)	787, 1307
Van91I	CCANNNNNTGG	1 cut(s)	1392
VneI	GTGCAC	1 cut(s)	1376
VpaK11BI	GGWCC	5 cut(s)	101, 178, 527, 750, 993
XagI	CCTNNNNNAGG	1 cut(s)	1047
XceI	RCATGY	2 cut(s)	1007, 1403
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1214
XmiI	GTMKAC	1 cut(s)	358
XmnI	GAANNNNTTC	3 cut(s)	87, 498, 1128
XspI	CTAG	4 cut(s)	596, 690, 894, 1538

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.