Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Reverse (-)

51096354 .. 51097645

Gene Structure 1292 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0403500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGTCCAGAGAAAGGGAGAGATTTGATTTTGATGAGATAGGGAAGAAGCTGAAGAGAGAAATAGATGCTTCTAATTCTTCTTCTGCTCATCACCATCATCAAATGGGAAGAAGACACATGTTGGGTCCTCCCGGAACCCTAAACACGATCACGCCATGTGCAGCCTGCAAACTCTTGAGAAGAAGATGCGCTCAAGAATGCCCCTTCTCTCCCTACTTCTCTCCCCACGAACCCCAGAAGTTCGCCTCCGTCCACAAAGTGTTTGGCGCCAGCAACGTATCCAAGATGCTTATGGTACCGGAGAGTCAAAGAGCAGACGCGGCGAATAGTCTTGTGTATGAGGCGAACGTGAGGCTAAGAGATCCGGTGTACGGATGCATGGGAGCGATTTCGGCTTTGCAGCAGCAAGTTCAATCTTTACAAGCTGAGCTTAATGCTGTGAGGGGTGAGATACTTAAGTACAAATATAGGGAAGCAAATCTCATGGATCCTTCTTCTCATCATCATCATCAAGTGGCAGCTTTGTTCTCTACTACTTCCGGGGGAGCTGTTTCAGTTGCTTCCCTCCCACCGTCCACACAGCCGCCACCGCCACCACCACCGCCGCCTCCTCTCCCTCCTACTTCCTCCTCCTCATCTATGTACACTCAACCCAACAGCGCCGCCGACTATAGCACCCTTTCAAGTGAAAATGTTTCCTACTTTGGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

236

Amino Acids

25.84

Weight (kDa)

8.82

Isoelectric Point (pI)

67.14

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LOB	PF03195	52 - 147	1.1e-38	Lateral organ boundaries (LOB) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	295
AccB1I	GGYRCC	2 cut(s)	266, 295
AccII	CGCG	1 cut(s)	320
AciI	CCGC	6 cut(s)	320, 584, 590, 602, 605, 663
AclWI	GGATC	3 cut(s)	356, 482, 495
AcuI	CTGAAG	1 cut(s)	71
AcyI	GRCGYC	1 cut(s)	267
AdeI	CACNNNGTG	1 cut(s)	259
AfaI	GTAC	4 cut(s)	297, 371, 461, 644
AfiI	CCNNNNNNNGG	2 cut(s)	12, 371
AflII	CTTAAG	1 cut(s)	455
AflIII	ACRYGT	1 cut(s)	117
AgsI	TTSAA	2 cut(s)	413, 684
AluBI	AGCT	5 cut(s)	49, 425, 430, 521, 548
AluI	AGCT	5 cut(s)	49, 425, 430, 521, 548
AlwI	GGATC	3 cut(s)	356, 482, 495
ApeKI	GCWGC	4 cut(s)	161, 400, 403, 518
Asp718I	GGTACC	1 cut(s)	295
AspLEI	GCGC	3 cut(s)	191, 269, 662
AspS9I	GGNCC	1 cut(s)	125
AsuC2I	CCSGG	2 cut(s)	132, 541
AsuHPI	GGTGA	2 cut(s)	83, 458
AvaII	GGWCC	1 cut(s)	125
BaeI	ACNNNNGTAYC	2 cut(s)	443, 476
BamHI	GGATCC	1 cut(s)	487
BanI	GGYRCC	2 cut(s)	266, 295
BbsI	GAAGAC	1 cut(s)	118
BbvI	GCAGC	4 cut(s)	173, 412, 415, 530
BccI	CCATC	1 cut(s)	102
BciVI	GTATCC	1 cut(s)	289
BcnI	CCSGG	2 cut(s)	132, 541
BfmI	CTRYAG	1 cut(s)	670
BfoI	RGCGCY	2 cut(s)	270, 663
BfrI	CTTAAG	1 cut(s)	455
BfuI	GTATCC	1 cut(s)	289
BisI	GCNGC	8 cut(s)	162, 321, 401, 404, 519, 584, 605, 663
BlpI	GCTNAGC	1 cut(s)	426
BlsI	GCNGC	8 cut(s)	163, 322, 402, 405, 520, 585, 606, 664
Bme1390I	CCNGG	2 cut(s)	132, 541
Bme18I	GGWCC	1 cut(s)	125
BmgT120I	GGNCC	1 cut(s)	125
BmiI	GGNNCC	5 cut(s)	126, 136, 268, 297, 489
BmrFI	CCNGG	2 cut(s)	132, 541
BmsI	GCATC	4 cut(s)	55, 176, 276, 365
BpiI	GAAGAC	1 cut(s)	118
Bpu1102I	GCTNAGC	1 cut(s)	426
BpuEI	CTTGAG	2 cut(s)	177, 196
BpuMI	CCSGG	2 cut(s)	132, 541
BsaHI	GRCGYC	1 cut(s)	267
BsaJI	CCNNGG	1 cut(s)	540
BsaWI	WCCGGW	2 cut(s)	298, 364
Bsc4I	CCNNNNNNNGG	2 cut(s)	12, 371
BseDI	CCNNGG	1 cut(s)	540
BseGI	GGATG	1 cut(s)	380
BseLI	CCNNNNNNNGG	2 cut(s)	12, 371
BseMII	CTCAG	1 cut(s)	417
BseRI	GAGGAG	3 cut(s)	600, 619, 622
BseXI	GCAGC	4 cut(s)	173, 412, 415, 530
BsgI	GTGCAG	1 cut(s)	180
Bsh1236I	CGCG	1 cut(s)	320
BshNI	GGYRCC	2 cut(s)	266, 295
BsiSI	CCGG	4 cut(s)	132, 299, 365, 540
BslI	CCNNNNNNNGG	2 cut(s)	12, 371
BsmI	GAATGC	1 cut(s)	203
Bsp1407I	TGTACA	1 cut(s)	642
Bsp143I	GATC	3 cut(s)	147, 361, 487
Bsp1720I	GCTNAGC	1 cut(s)	426
BspACI	CCGC	6 cut(s)	320, 584, 590, 602, 605, 663
BspCNI	CTCAG	1 cut(s)	418
BspFNI	CGCG	1 cut(s)	320
BspLI	GGNNCC	5 cut(s)	126, 136, 268, 297, 489
BspPI	GGATC	3 cut(s)	356, 482, 495
BspT107I	GGYRCC	2 cut(s)	266, 295
BspTI	CTTAAG	1 cut(s)	455
BsrGI	TGTACA	1 cut(s)	642
BssECI	CCNNGG	1 cut(s)	540
BssMI	GATC	3 cut(s)	147, 361, 487
BssNI	GRCGYC	1 cut(s)	267
Bst4CI	ACNGT	1 cut(s)	573
Bst6I	CTCTTC	1 cut(s)	47
BstACI	GRCGYC	1 cut(s)	267
BstAFI	CTTAAG	1 cut(s)	455
BstAUI	TGTACA	1 cut(s)	642
BstC8I	GCNNGC	2 cut(s)	166, 271
BstDEI	CTNAG	2 cut(s)	356, 426
BstF5I	GGATG	1 cut(s)	380
BstFNI	CGCG	1 cut(s)	320
BstH2I	RGCGCY	2 cut(s)	270, 663
BstHHI	GCGC	3 cut(s)	191, 269, 662
BstKTI	GATC	3 cut(s)	150, 364, 490
BstMBI	GATC	3 cut(s)	147, 361, 487
BstMWI	GCNNNNNNNGC	3 cut(s)	320, 392, 589
BstNSI	RCATGY	1 cut(s)	121
BstSCI	CCNGG	2 cut(s)	130, 539
BstSFI	CTRYAG	1 cut(s)	670
BstUI	CGCG	1 cut(s)	320
BstV1I	GCAGC	4 cut(s)	173, 412, 415, 530
BstV2I	GAAGAC	1 cut(s)	118
BstX2I	RGATCY	2 cut(s)	361, 487
BstYI	RGATCY	2 cut(s)	361, 487
BsuI	GTATCC	1 cut(s)	289
BtsCI	GGATG	1 cut(s)	380
Cac8I	GCNNGC	2 cut(s)	166, 271
CfoI	GCGC	3 cut(s)	191, 269, 662
Cfr13I	GGNCC	1 cut(s)	125
CseI	GACGC	1 cut(s)	326
Csp6I	GTAC	4 cut(s)	296, 370, 460, 643
CviAII	CATG	4 cut(s)	118, 156, 379, 484
CviJI	RGCY	9 cut(s)	49, 164, 355, 395, 425, 430, 521, 548, 583
CviKI_1	RGCY	9 cut(s)	49, 164, 355, 395, 425, 430, 521, 548, 583
CviQI	GTAC	4 cut(s)	296, 370, 460, 643
DdeI	CTNAG	2 cut(s)	356, 426
DinI	GGCGCC	1 cut(s)	268
DpnI	GATC	3 cut(s)	149, 363, 489
DpnII	GATC	3 cut(s)	147, 361, 487
DraIII	CACNNNGTG	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	47
EarI	CTCTTC	1 cut(s)	47
Eco47I	GGWCC	1 cut(s)	125
Eco57I	CTGAAG	1 cut(s)	71
EcoO109I	RGGNCCY	1 cut(s)	125
EcoT22I	ATGCAT	1 cut(s)	380
EgeI	GGCGCC	1 cut(s)	268
EheI	GGCGCC	1 cut(s)	268
FaeI	CATG	4 cut(s)	121, 159, 382, 487
FaiI	YATR	9 cut(s)	119, 157, 293, 339, 380, 468, 485, 641, 672
FalI	AAGNNNNNCTT	2 cut(s)	414, 446
FatI	CATG	4 cut(s)	117, 155, 378, 483
Fnu4HI	GCNGC	8 cut(s)	162, 321, 401, 404, 519, 584, 605, 663
FokI	GGATG	1 cut(s)	387
Fsp4HI	GCNGC	8 cut(s)	162, 321, 401, 404, 519, 584, 605, 663
GlaI	GCGC	3 cut(s)	190, 268, 661
GluI	GCNGC	8 cut(s)	162, 321, 401, 404, 519, 584, 605, 663
HaeII	RGCGCY	2 cut(s)	270, 663
HapII	CCGG	4 cut(s)	132, 299, 365, 540
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	3 cut(s)	191, 269, 662
Hin1I	GRCGYC	1 cut(s)	267
Hin1II	CATG	4 cut(s)	121, 159, 382, 487
Hin6I	GCGC	3 cut(s)	189, 267, 660
HinP1I	GCGC	3 cut(s)	189, 267, 660
HinfI	GANTC	1 cut(s)	304
HpaII	CCGG	4 cut(s)	132, 299, 365, 540
HphI	GGTGA	2 cut(s)	83, 458
Hpy166II	GTNNAC	4 cut(s)	253, 370, 576, 645
Hpy188III	TCNNGA	3 cut(s)	6, 175, 194
Hpy8I	GTNNAC	4 cut(s)	253, 370, 576, 645
HpyAV	CCTTC	2 cut(s)	214, 501
HpyCH4III	ACNGT	1 cut(s)	573
HpyCH4IV	ACGT	2 cut(s)	276, 348
HpyCH4V	TGCA	4 cut(s)	161, 168, 378, 400
HpyF10VI	GCNNNNNNNGC	3 cut(s)	320, 392, 589
HpyF3I	CTNAG	2 cut(s)	356, 426
HpySE526I	ACGT	2 cut(s)	276, 348
Hsp92I	GRCGYC	1 cut(s)	267
Hsp92II	CATG	4 cut(s)	121, 159, 382, 487
HspAI	GCGC	3 cut(s)	189, 267, 660
KasI	GGCGCC	1 cut(s)	266
KpnI	GGTACC	1 cut(s)	299
Kzo9I	GATC	3 cut(s)	147, 361, 487
LmnI	GCTCC	2 cut(s)	383, 545
LpnPI	CCDG	8 cut(s)	19, 145, 178, 248, 283, 312, 378, 553
Lsp1109I	GCAGC	4 cut(s)	173, 412, 415, 530
LweI	GCATC	4 cut(s)	55, 176, 276, 365
MaeII	ACGT	2 cut(s)	276, 348
MalI	GATC	3 cut(s)	149, 363, 489
MboI	GATC	3 cut(s)	147, 361, 487
MboII	GAAGA	9 cut(s)	55, 64, 69, 72, 120, 123, 192, 195, 486
MflI	RGATCY	2 cut(s)	361, 487
MluCI	AATT	1 cut(s)	73
Mly113I	GGCGCC	1 cut(s)	267
MlyI	GAGTC	1 cut(s)	313
Mph1103I	ATGCAT	1 cut(s)	380
MseI	TTAA	3 cut(s)	432, 456, 709
MspCI	CTTAAG	1 cut(s)	455
MspI	CCGG	4 cut(s)	132, 299, 365, 540
MspR9I	CCNGG	2 cut(s)	132, 541
Mva1269I	GAATGC	1 cut(s)	203
MvnI	CGCG	1 cut(s)	320
MwoI	GCNNNNNNNGC	3 cut(s)	320, 392, 589
NarI	GGCGCC	1 cut(s)	267
NciI	CCSGG	2 cut(s)	132, 541
NdeII	GATC	3 cut(s)	147, 361, 487
NlaIII	CATG	4 cut(s)	121, 159, 382, 487
NlaIV	GGNNCC	5 cut(s)	126, 136, 268, 297, 489
NsiI	ATGCAT	1 cut(s)	380
NspI	RCATGY	1 cut(s)	121
PciI	ACATGT	1 cut(s)	117
PctI	GAATGC	1 cut(s)	203
PfoI	TCCNGGA	1 cut(s)	130
PkrI	GCNGC	8 cut(s)	163, 322, 402, 405, 520, 585, 606, 664
PleI	GAGTC	1 cut(s)	312
PluTI	GGCGCC	1 cut(s)	270
PpsI	GAGTC	1 cut(s)	312
PpuMI	RGGWCCY	1 cut(s)	125
PscI	ACATGT	1 cut(s)	117
Psp5II	RGGWCCY	1 cut(s)	125
PspN4I	GGNNCC	5 cut(s)	126, 136, 268, 297, 489
PspPI	GGNCC	1 cut(s)	125
PspPPI	RGGWCCY	1 cut(s)	125
PsuI	RGATCY	2 cut(s)	361, 487
RsaI	GTAC	4 cut(s)	297, 371, 461, 644
RsaNI	GTAC	4 cut(s)	296, 370, 460, 643
SaqAI	TTAA	3 cut(s)	432, 456, 709
SatI	GCNGC	8 cut(s)	162, 321, 401, 404, 519, 584, 605, 663
Sau3AI	GATC	3 cut(s)	147, 361, 487
Sau96I	GGNCC	1 cut(s)	125
SchI	GAGTC	1 cut(s)	313
ScrFI	CCNGG	2 cut(s)	132, 541
SetI	ASST	7 cut(s)	51, 279, 351, 427, 432, 523, 550
SfaNI	GCATC	4 cut(s)	55, 176, 276, 365
SfcI	CTRYAG	1 cut(s)	670
SfoI	GGCGCC	1 cut(s)	268
SinI	GGWCC	1 cut(s)	125
SmlI	CTYRAG	3 cut(s)	175, 192, 455
SmoI	CTYRAG	3 cut(s)	175, 192, 455
Sse9I	AATT	1 cut(s)	73
SsiI	CCGC	6 cut(s)	320, 584, 590, 602, 605, 663
SspDI	GGCGCC	1 cut(s)	266
StyD4I	CCNGG	2 cut(s)	130, 539
TaaI	ACNGT	1 cut(s)	573
TaiI	ACGT	2 cut(s)	279, 351
TasI	AATT	1 cut(s)	73
TatI	WGTACW	2 cut(s)	459, 642
TauI	GCSGC	4 cut(s)	323, 586, 607, 665
Tru1I	TTAA	3 cut(s)	432, 456, 709
Tru9I	TTAA	3 cut(s)	432, 456, 709
TseI	GCWGC	4 cut(s)	161, 400, 403, 518
TspGWI	ACGGA	2 cut(s)	238, 387
Vha464I	CTTAAG	1 cut(s)	455
VpaK11BI	GGWCC	1 cut(s)	125
XceI	RCATGY	1 cut(s)	121
XcmI	CCANNNNNNNNNTGG	2 cut(s)	260, 289
Zsp2I	ATGCAT	1 cut(s)	380

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.