Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8176084.1

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 650

Gene Structure 649 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8176084.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 330 bp

atgacggtgactaacagcggcatccaatacgccgttcagatcatcaccaaacacttcggcaacctcgtcgctaaagtttgcgaaacccttctgaaatccggaccgttaaacctgggcgctctgatccgatcgacggcgctcactccccagcaagtcaagaactctctcctgattctggtccagcacaattgcgtccagccctttacccaagagtccaaggctgggcttaaagttcagtacatggcggtgtacgataacatactccatcgacttaggtttgccaaatttctggcggttgtggcccaggagcttgatgatgatgttagttca

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

110

Amino Acids

12.13

Weight (kDa)

9.03

Isoelectric Point (pI)

35.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	98
AciI	CCGC	3 cut(s)	18, 245, 293
AclWI	GGATC	1 cut(s)	118
AcsI	RAATTY	1 cut(s)	284
AfaI	GTAC	2 cut(s)	239, 251
AfiI	CCNNNNNNNGG	3 cut(s)	133, 175, 222
AjnI	CCWGG	2 cut(s)	111, 303
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	1 cut(s)	310
AluI	AGCT	1 cut(s)	310
AlwI	GGATC	1 cut(s)	118
Aor13HI	TCCGGA	1 cut(s)	98
AoxI	GGCC	1 cut(s)	300
ApoI	RAATTY	1 cut(s)	284
Asp700I	GAANNNNTTC	1 cut(s)	87
AspLEI	GCGC	2 cut(s)	119, 139
AspS9I	GGNCC	3 cut(s)	101, 178, 301
AsuHPI	GGTGA	2 cut(s)	19, 37
AvaII	GGWCC	2 cut(s)	101, 178
BccI	CCATC	1 cut(s)	273
BceAI	ACGGC	2 cut(s)	17, 150
BcgI	CGANNNNNNTGC	2 cut(s)	49, 83
BciT130I	CCWGG	2 cut(s)	113, 305
BfoI	RGCGCY	2 cut(s)	120, 140
BisI	GCNGC	1 cut(s)	19
BlsI	GCNGC	1 cut(s)	20
Bme1390I	CCNGG	2 cut(s)	113, 305
Bme18I	GGWCC	2 cut(s)	101, 178
BmgT120I	GGNCC	3 cut(s)	101, 178, 301
BmrFI	CCNGG	2 cut(s)	113, 305
BmsI	GCATC	1 cut(s)	30
BsaJI	CCNNGG	3 cut(s)	112, 216, 303
BsaWI	WCCGGW	1 cut(s)	98
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 175, 222
BseAI	TCCGGA	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	113, 305
BseDI	CCNNGG	3 cut(s)	112, 216, 303
BseGI	GGATG	1 cut(s)	21
BseLI	CCNNNNNNNGG	3 cut(s)	133, 175, 222
BseYI	CCCAGC	2 cut(s)	147, 221
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	1 cut(s)	302
BsiEI	CGRYCG	1 cut(s)	131
BsiSI	CCGG	1 cut(s)	99
BslI	CCNNNNNNNGG	3 cut(s)	133, 175, 222
BsnI	GGCC	1 cut(s)	302
Bsp13I	TCCGGA	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	39, 123, 128
BspACI	CCGC	3 cut(s)	18, 245, 293
BspANI	GGCC	1 cut(s)	302
BspEI	TCCGGA	1 cut(s)	98
BspPI	GGATC	1 cut(s)	118
BssECI	CCNNGG	3 cut(s)	112, 216, 303
BssMI	GATC	3 cut(s)	39, 123, 128
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	113, 305
Bst4CI	ACNGT	2 cut(s)	7, 105
BstDEI	CTNAG	1 cut(s)	272
BstF5I	GGATG	1 cut(s)	21
BstH2I	RGCGCY	2 cut(s)	120, 140
BstHHI	GCGC	2 cut(s)	119, 139
BstKTI	GATC	3 cut(s)	42, 126, 131
BstMBI	GATC	3 cut(s)	39, 123, 128
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	1 cut(s)	299
BstNI	CCWGG	2 cut(s)	113, 305
BstSCI	CCNGG	2 cut(s)	111, 303
BstXI	CCANNNNNNTGG	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	302
BtsCI	GGATG	1 cut(s)	21
CfoI	GCGC	2 cut(s)	119, 139
Cfr13I	GGNCC	3 cut(s)	101, 178, 301
CpoI	CGGWCCG	1 cut(s)	101
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	2 cut(s)	238, 250
CspI	CGGWCCG	1 cut(s)	101
CviAII	CATG	1 cut(s)	241
CviJI	RGCY	5 cut(s)	199, 221, 226, 302, 310
CviKI_1	RGCY	5 cut(s)	199, 221, 226, 302, 310
CviQI	GTAC	2 cut(s)	238, 250
DdeI	CTNAG	1 cut(s)	272
DpnI	GATC	3 cut(s)	41, 125, 130
DpnII	GATC	3 cut(s)	39, 123, 128
Eco130I	CCWWGG	1 cut(s)	216
Eco47I	GGWCC	2 cut(s)	101, 178
EcoRII	CCWGG	2 cut(s)	111, 303
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	1 cut(s)	244
FaiI	YATR	2 cut(s)	242, 260
FatI	CATG	1 cut(s)	240
Fnu4HI	GCNGC	1 cut(s)	19
FokI	GGATG	1 cut(s)	8
Fsp4HI	GCNGC	1 cut(s)	19
GlaI	GCGC	2 cut(s)	118, 138
GluI	GCNGC	1 cut(s)	19
GsaI	CCCAGC	2 cut(s)	151, 225
HaeII	RGCGCY	2 cut(s)	120, 140
HaeIII	GGCC	1 cut(s)	302
HapII	CCGG	1 cut(s)	99
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	2 cut(s)	119, 139
Hin1II	CATG	1 cut(s)	244
Hin6I	GCGC	2 cut(s)	117, 137
HinP1I	GCGC	2 cut(s)	117, 137
HinfI	GANTC	2 cut(s)	172, 212
HpaII	CCGG	1 cut(s)	99
HphI	GGTGA	2 cut(s)	19, 37
Hpy166II	GTNNAC	1 cut(s)	250
Hpy188I	TCNGA	4 cut(s)	39, 93, 123, 128
Hpy188III	TCNNGA	3 cut(s)	99, 157, 169
Hpy8I	GTNNAC	1 cut(s)	250
Hpy99I	CGWCG	2 cut(s)	71, 136
HpyAV	CCTTC	1 cut(s)	98
HpyCH4III	ACNGT	2 cut(s)	7, 105
HpyF10VI	GCNNNNNNNGC	1 cut(s)	299
HpyF3I	CTNAG	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	244
HspAI	GCGC	2 cut(s)	117, 137
Kpn2I	TCCGGA	1 cut(s)	98
Kzo9I	GATC	3 cut(s)	39, 123, 128
LmnI	GCTCC	1 cut(s)	307
LweI	GCATC	1 cut(s)	30
MaeIII	GTNAC	1 cut(s)	7
MalI	GATC	3 cut(s)	41, 125, 130
MboI	GATC	3 cut(s)	39, 123, 128
MfeI	CAATTG	1 cut(s)	187
MluCI	AATT	2 cut(s)	187, 284
MlyI	GAGTC	1 cut(s)	221
MnlI	CCTC	1 cut(s)	74
MroI	TCCGGA	1 cut(s)	98
MroXI	GAANNNNTTC	1 cut(s)	87
MseI	TTAA	2 cut(s)	107, 228
MslI	CAYNNNNRTG	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	18
MspI	CCGG	1 cut(s)	99
MspR9I	CCNGG	2 cut(s)	113, 305
MunI	CAATTG	1 cut(s)	187
MvaI	CCWGG	2 cut(s)	113, 305
MwoI	GCNNNNNNNGC	1 cut(s)	299
NdeII	GATC	3 cut(s)	39, 123, 128
NlaIII	CATG	1 cut(s)	244
NmuCI	GTSAC	1 cut(s)	7
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PdmI	GAANNNNTTC	1 cut(s)	87
PfeI	GAWTC	1 cut(s)	172
PkrI	GCNGC	1 cut(s)	20
Ple19I	CGATCG	1 cut(s)	131
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
Psp6I	CCWGG	2 cut(s)	111, 303
PspFI	CCCAGC	2 cut(s)	147, 221
PspGI	CCWGG	2 cut(s)	111, 303
PspPI	GGNCC	3 cut(s)	101, 178, 301
PvuI	CGATCG	1 cut(s)	131
RsaI	GTAC	2 cut(s)	239, 251
RsaNI	GTAC	2 cut(s)	238, 250
RseI	CAYNNNNRTG	1 cut(s)	245
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SaqAI	TTAA	2 cut(s)	107, 228
SatI	GCNGC	1 cut(s)	19
Sau3AI	GATC	3 cut(s)	39, 123, 128
Sau96I	GGNCC	3 cut(s)	101, 178, 301
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	2 cut(s)	113, 305
SetI	ASST	4 cut(s)	66, 114, 278, 312
SfaNI	GCATC	1 cut(s)	30
SinI	GGWCC	2 cut(s)	101, 178
SmiMI	CAYNNNNRTG	1 cut(s)	245
Sse9I	AATT	2 cut(s)	187, 284
SsiI	CCGC	3 cut(s)	18, 245, 293
StyD4I	CCNGG	2 cut(s)	111, 303
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	2 cut(s)	7, 105
TaqI	TCGA	2 cut(s)	131, 268
TasI	AATT	2 cut(s)	187, 284
TatI	WGTACW	1 cut(s)	237
TauI	GCSGC	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	172
Tru1I	TTAA	2 cut(s)	107, 228
Tru9I	TTAA	2 cut(s)	107, 228
TseFI	GTSAC	1 cut(s)	7
Tsp45I	GTSAC	1 cut(s)	7
VpaK11BI	GGWCC	2 cut(s)	101, 178
XapI	RAATTY	1 cut(s)	284
XmnI	GAANNNNTTC	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.