Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0012587.1

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Forward (+)

22899 .. 24779

Gene Structure 1881 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0012587.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 678 bp

atgggtgccatttataatgaggtgatagatagtgcagccggccgtaatttgaccaaagtttctgtcaaagcttccctccacttgttgtgcggtgcagatcctgtaagaggaggatatgagggtgagggtgagggtgaggatgaggatgaggatgtgccatatagcgttgacttgaagaaaattatagaactgcttcagaatgatgaggtggagtcgattgttttgaaaagatatggacaggatgcttgtagaatatttaggttactgacaaggcagtcaaacactggtcagttttttgagacagataagatatcagtcgatgcccttgttgacaaaaaggaaacacctaagattctctataagctctggaaggatgactacgttcatatggagaaattatcattgacaacagctaaacagtcacaagtcatggtgtggaaagtgcacaagtccattgtttgggaacatgttttagatgagatgtaccatgcggcgtacaatttggttaagcgatatgatcatgagagggaagaaaataaggaggttacaaataccccgaaggagaaacgtgtcggtgaattagagaaaaaagccaaccggtttctaggtgtcaggaaaattatggcattatcgcttgtgaagcttgatgatgctctcatgctcttccatgacttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

225

Amino Acids

25.94

Weight (kDa)

5.72

Isoelectric Point (pI)

26.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	15
AasI	GACNNNNNNGTC	1 cut(s)	274
AccB1I	GGYRCC	1 cut(s)	5
AccB7I	CCANNNNNTGG	1 cut(s)	459
AciI	CCGC	2 cut(s)	90, 491
AclWI	GGATC	1 cut(s)	92
AcoI	YGGCCR	1 cut(s)	40
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	2 cut(s)	485, 497
AfiI	CCNNNNNNNGG	2 cut(s)	107, 459
AflIII	ACRYGT	2 cut(s)	466, 568
AgeI	ACCGGT	1 cut(s)	597
AgsI	TTSAA	2 cut(s)	175, 226
AluBI	AGCT	4 cut(s)	71, 364, 413, 643
AluI	AGCT	4 cut(s)	71, 364, 413, 643
Alw21I	GWGCWC	1 cut(s)	447
Alw26I	GTCTC	1 cut(s)	293
Alw44I	GTGCAC	1 cut(s)	443
AlwI	GGATC	1 cut(s)	92
AlwNI	CAGNNNCTG	1 cut(s)	101
AoxI	GGCC	1 cut(s)	40
ApaLI	GTGCAC	1 cut(s)	443
ApeKI	GCWGC	1 cut(s)	35
ArsI	GACNNNNNNTTYG	2 cut(s)	48, 80
AsiGI	ACCGGT	1 cut(s)	597
Asp700I	GAANNNNTTC	1 cut(s)	192
AsuHPI	GGTGA	5 cut(s)	34, 134, 140, 146, 587
BaeGI	GKGCMC	1 cut(s)	447
BanI	GGYRCC	1 cut(s)	5
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
Bbv12I	GWGCWC	1 cut(s)	447
BbvI	GCAGC	1 cut(s)	47
BceAI	ACGGC	1 cut(s)	27
BclI	TGATCA	1 cut(s)	517
BcoDI	GTCTC	1 cut(s)	293
BfaI	CTAG	1 cut(s)	605
BisI	GCNGC	2 cut(s)	36, 492
BlsI	GCNGC	2 cut(s)	37, 493
BmiI	GGNNCC	1 cut(s)	7
BmsI	GCATC	3 cut(s)	232, 310, 640
BsaWI	WCCGGW	1 cut(s)	597
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 459
Bse118I	RCCGGY	2 cut(s)	38, 597
Bse1I	ACTGG	1 cut(s)	289
BseGI	GGATG	5 cut(s)	145, 151, 157, 247, 379
BseLI	CCNNNNNNNGG	2 cut(s)	107, 459
BseNI	ACTGG	1 cut(s)	289
BseRI	GAGGAG	1 cut(s)	123
BseSI	GKGCMC	1 cut(s)	447
BseX3I	CGGCCG	1 cut(s)	40
BseXI	GCAGC	1 cut(s)	47
BsgI	GTGCAG	2 cut(s)	54, 114
Bsh1285I	CGRYCG	1 cut(s)	43
BshFI	GGCC	1 cut(s)	42
BshNI	GGYRCC	1 cut(s)	5
BshTI	ACCGGT	1 cut(s)	597
BsiEI	CGRYCG	1 cut(s)	43
BsiHKAI	GWGCWC	1 cut(s)	447
BsiSI	CCGG	2 cut(s)	39, 598
BslI	CCNNNNNNNGG	2 cut(s)	107, 459
BsmAI	GTCTC	1 cut(s)	293
BsnI	GGCC	1 cut(s)	42
Bsp1286I	GDGCHC	1 cut(s)	447
Bsp143I	GATC	2 cut(s)	97, 517
BspACI	CCGC	2 cut(s)	90, 491
BspANI	GGCC	1 cut(s)	42
BspHI	TCATGA	1 cut(s)	520
BspLI	GGNNCC	1 cut(s)	7
BspPI	GGATC	1 cut(s)	92
BspQI	GCTCTTC	1 cut(s)	668
BspT107I	GGYRCC	1 cut(s)	5
BsrFI	RCCGGY	2 cut(s)	38, 597
BsrI	ACTGG	1 cut(s)	289
BssAI	RCCGGY	2 cut(s)	38, 597
BssMI	GATC	2 cut(s)	97, 517
Bst4CI	ACNGT	1 cut(s)	420
Bst6I	CTCTTC	1 cut(s)	668
BstC8I	GCNNGC	1 cut(s)	40
BstDEI	CTNAG	1 cut(s)	348
BstENI	CCTNNNNNAGG	1 cut(s)	105
BstF5I	GGATG	5 cut(s)	145, 151, 157, 247, 379
BstKTI	GATC	2 cut(s)	100, 520
BstMAI	GTCTC	1 cut(s)	293
BstMBI	GATC	2 cut(s)	97, 517
BstMCI	CGRYCG	1 cut(s)	43
BstMWI	GCNNNNNNNGC	1 cut(s)	640
BstNSI	RCATGY	1 cut(s)	470
BstSLI	GKGCMC	1 cut(s)	447
BstV1I	GCAGC	1 cut(s)	47
BstX2I	RGATCY	1 cut(s)	97
BstYI	RGATCY	1 cut(s)	97
BstZI	CGGCCG	1 cut(s)	40
BsuRI	GGCC	1 cut(s)	42
BtsCI	GGATG	5 cut(s)	145, 151, 157, 247, 379
BtsIMutI	CAGTG	1 cut(s)	282
Cac8I	GCNNGC	1 cut(s)	40
CaiI	CAGNNNCTG	1 cut(s)	101
CciI	TCATGA	1 cut(s)	520
Cfr10I	RCCGGY	2 cut(s)	38, 597
Csp6I	GTAC	2 cut(s)	484, 496
CspAI	ACCGGT	1 cut(s)	597
CviAII	CATG	6 cut(s)	430, 467, 488, 521, 658, 668
CviJI	RGCY	7 cut(s)	38, 42, 71, 364, 413, 593, 643
CviKI_1	RGCY	7 cut(s)	38, 42, 71, 364, 413, 593, 643
CviQI	GTAC	2 cut(s)	484, 496
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	2 cut(s)	99, 519
DpnII	GATC	2 cut(s)	97, 517
DrdI	GACNNNNNNGTC	1 cut(s)	274
DseDI	GACNNNNNNGTC	1 cut(s)	274
EaeI	YGGCCR	1 cut(s)	40
EagI	CGGCCG	1 cut(s)	40
Eam1104I	CTCTTC	1 cut(s)	668
EarI	CTCTTC	1 cut(s)	668
EclXI	CGGCCG	1 cut(s)	40
Eco32I	GATATC	1 cut(s)	312
Eco52I	CGGCCG	1 cut(s)	40
Eco57I	CTGAAG	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	105
EcoRV	GATATC	1 cut(s)	312
FaeI	CATG	6 cut(s)	433, 470, 491, 524, 661, 671
FatI	CATG	6 cut(s)	429, 466, 487, 520, 657, 667
FauNDI	CATATG	1 cut(s)	387
FbaI	TGATCA	1 cut(s)	517
Fnu4HI	GCNGC	2 cut(s)	36, 492
FokI	GGATG	5 cut(s)	152, 158, 164, 254, 386
Fsp4HI	GCNGC	2 cut(s)	36, 492
FspBI	CTAG	1 cut(s)	605
GluI	GCNGC	2 cut(s)	36, 492
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	2 cut(s)	39, 598
Hin1II	CATG	6 cut(s)	433, 470, 491, 524, 661, 671
HincII	GTYRAC	2 cut(s)	169, 331
HindII	GTYRAC	2 cut(s)	169, 331
HindIII	AAGCTT	2 cut(s)	69, 641
HinfI	GANTC	2 cut(s)	212, 352
HpaII	CCGG	2 cut(s)	39, 598
HphI	GGTGA	5 cut(s)	34, 134, 140, 146, 587
Hpy166II	GTNNAC	3 cut(s)	169, 331, 445
Hpy188I	TCNGA	2 cut(s)	198, 677
Hpy188III	TCNNGA	3 cut(s)	367, 521, 613
Hpy8I	GTNNAC	3 cut(s)	169, 331, 445
HpyAV	CCTTC	2 cut(s)	364, 553
HpyCH4III	ACNGT	1 cut(s)	420
HpyCH4IV	ACGT	2 cut(s)	381, 568
HpyCH4V	TGCA	3 cut(s)	35, 95, 445
HpyF10VI	GCNNNNNNNGC	1 cut(s)	640
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	2 cut(s)	381, 568
Hsp92II	CATG	6 cut(s)	433, 470, 491, 524, 661, 671
KroI	GCCGGC	1 cut(s)	38
KroNI	GCCGGC	1 cut(s)	40
Ksp22I	TGATCA	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	97, 517
LguI	GCTCTTC	1 cut(s)	668
LpnPI	CCDG	7 cut(s)	52, 114, 224, 270, 352, 598, 611
Lsp1109I	GCAGC	1 cut(s)	47
LweI	GCATC	3 cut(s)	232, 310, 640
MaeI	CTAG	1 cut(s)	605
MaeII	ACGT	2 cut(s)	381, 568
MaeIII	GTNAC	3 cut(s)	261, 420, 544
MalI	GATC	2 cut(s)	99, 519
MboI	GATC	2 cut(s)	97, 517
MboII	GAAGA	3 cut(s)	187, 542, 655
MflI	RGATCY	1 cut(s)	97
MhlI	GDGCHC	1 cut(s)	447
MluCI	AATT	6 cut(s)	46, 180, 395, 499, 578, 618
MlyI	GAGTC	1 cut(s)	221
MroNI	GCCGGC	1 cut(s)	38
MroXI	GAANNNNTTC	1 cut(s)	192
MseI	TTAA	1 cut(s)	507
MspI	CCGG	2 cut(s)	39, 598
MwoI	GCNNNNNNNGC	1 cut(s)	640
NaeI	GCCGGC	1 cut(s)	40
NdeI	CATATG	1 cut(s)	387
NdeII	GATC	2 cut(s)	97, 517
NgoMIV	GCCGGC	1 cut(s)	38
NlaIII	CATG	6 cut(s)	433, 470, 491, 524, 661, 671
NlaIV	GGNNCC	1 cut(s)	7
NmuCI	GTSAC	1 cut(s)	420
NspI	RCATGY	1 cut(s)	470
PagI	TCATGA	1 cut(s)	520
PciI	ACATGT	1 cut(s)	466
PciSI	GCTCTTC	1 cut(s)	668
PdiI	GCCGGC	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	192
PfeI	GAWTC	1 cut(s)	352
PflMI	CCANNNNNTGG	1 cut(s)	459
PinAI	ACCGGT	1 cut(s)	597
PkrI	GCNGC	2 cut(s)	37, 493
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PscI	ACATGT	1 cut(s)	466
PsiI	TTATAA	1 cut(s)	15
PspN4I	GGNNCC	1 cut(s)	7
PstNI	CAGNNNCTG	1 cut(s)	101
PsuI	RGATCY	1 cut(s)	97
RsaI	GTAC	2 cut(s)	485, 497
RsaNI	GTAC	2 cut(s)	484, 496
SapI	GCTCTTC	1 cut(s)	668
SaqAI	TTAA	1 cut(s)	507
SatI	GCNGC	2 cut(s)	36, 492
Sau3AI	GATC	2 cut(s)	97, 517
SchI	GAGTC	1 cut(s)	221
SduI	GDGCHC	1 cut(s)	447
SfaNI	GCATC	3 cut(s)	232, 310, 640
Sse9I	AATT	6 cut(s)	46, 180, 395, 499, 578, 618
SsiI	CCGC	2 cut(s)	90, 491
SspI	AATATT	1 cut(s)	255
SspMI	CTAG	1 cut(s)	605
TaaI	ACNGT	1 cut(s)	420
TaiI	ACGT	2 cut(s)	384, 571
TaqI	TCGA	2 cut(s)	215, 318
TasI	AATT	6 cut(s)	46, 180, 395, 499, 578, 618
TauI	GCSGC	1 cut(s)	494
TfiI	GAWTC	1 cut(s)	352
Tru1I	TTAA	1 cut(s)	507
Tru9I	TTAA	1 cut(s)	507
TscAI	CASTG	1 cut(s)	289
TseFI	GTSAC	1 cut(s)	420
TseI	GCWGC	1 cut(s)	35
Tsp45I	GTSAC	1 cut(s)	420
TspDTI	ATGAA	1 cut(s)	374
TspRI	CASTG	1 cut(s)	289
Van91I	CCANNNNNTGG	1 cut(s)	459
VneI	GTGCAC	1 cut(s)	443
XagI	CCTNNNNNAGG	1 cut(s)	105
XceI	RCATGY	1 cut(s)	470
XmnI	GAANNNNTTC	1 cut(s)	192
XspI	CTAG	1 cut(s)	605

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.