Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Forward (+)

62824902 .. 62831144

Gene Structure 6243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG411200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1605 bp

ATGCTCGTCACAATAACCCGGCCCGGGTTAGTTCGGTTAGGGCTCTGCAAACTCCCACCGTTTATTTCCCGCGTCTCTCTAACTGAAGCTTCAAACAAGAAGAAGAAGAAGAAGATGACGGTGACTAACAGCGGCATCCAATACGCCGTTCAGATCATCACCAAACACTTCGGCAACCTCGTCGCTAAAGTTTGCGAAACCCTTCTGAAATCCGGACCGTTAAACCTGGGCGCTCTGATCCGATCGACGGCGCTCACTCCCCAGCAAGTCAAGAACTCTCTCCTGATTCTGGTCCAGCACAATTGCGTCCAGCCCTTTACCCAAGAGTCCAAGGCTGGGCTTAAAGTTCAGTACATTGCGGTGTACGATAACATACTCCATCGACTTAGGTTTGCGAAATTTCTGGCGGTTGTGGCCCAGGAGCTTGACGATGATTGCAAACAACTTCTTGCTGGTTTACTTGAGCATGGTAGACTTACACAGCAACAATTAATGGACAGAGCCAATCAGAAATCCAAATCAAATAGCAGTCAAGTTCAGAATGCTGCTCAAGATAACTTTGTTAGACTTGTGACTGCTCGTTTTGTTGAACGCTGCCCGGCCCCTGAACCACTTCTTGAAGAAGCACCTGAACAAGAAGGTCCGAAGAAGCCACGCTCTAAATCTGCTAAGATGGCTCAAGTATCAGAGACCATAGAACAACGTGTTCTAGCAGCAGCAAGGCCTATGGAAGCAATAAGATTTTTAATTATGACAGATCCAGAAATTGATGATCCATCACAAAAAAGTGAGAATAATTCCTCTAGTATGAGTGTTGGGAAGAAGCGCAAGTTTGATGATTTGGATATTGGTGAAGAACATGGGTCCAATGATAAGGAAGTGATTCTTTGGCGTGCTAATTTTGAGCAGTTCATTCGTTGTCTAAGGCATAAGGCTTGTGTTCAGAGTGTTAGAGCACAACATGACGATGGAGCTGCAGTTGTGTTAAGAGCAGTGCTGAAGGCAACTAGAATGCAGGAGACCAAAGTGAAAACAGATTCTTCAGTTCCTTTAAAGCTGGATGCCATTTATAATGAGGTGATAGATAGTGCAGCCGGCCGTAGTTTGACCCAGGATGATGTCAAAGCTTCCCTCAGCTTGTTGTGCGGTCCACCTCTTGTAAGAGGAGGATATGGGGATGAGGGTGAGGATGGGGATGTGCCATATAGCGTTGACTTGAAGAAAATTATAGAACTGCTTCAGAATGATGAGGTGGAGTCGATTGTTTTGAAAAGATATGGACAGGATGCTTATAGAATATTTAGGTTACTGACAAGGCAGTCAAATGCTGGTCAGTTTTTTGAGACAGATAAGGTAATAACATTGTTATGGTGCCACTCTTCGCAATCCATTAAGTTTTCTACATTCGGTAGAGCTGCTGTTAATTTGTTGCTCTCATTGTTTAGCATAATGTTGTACTGTGAGAAACTAATAGGAGATCTAACTATATCTTCAACACTAGTCTCGTATGACATAAGTTGCTATTGCATGATACATGGTTATCTAGCTCTATGTACTACTACTGGCAATCCAGAAAATTTTAAGATATGGGTAACAACTTGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

534

Amino Acids

59.5

Weight (kDa)

8.77

Isoelectric Point (pI)

40.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_9	PF08221	48 - 104	2.4e-18	RNA polymerase III subunit RPC82 helix-turn-helix domain
RNA_pol_Rpc82	PF05645	185 - 365	1.8e-18	RNA polymerase III subunit RPC82

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1071
AasI	GACNNNNNNGTC	1 cut(s)	1318
AccB1I	GGYRCC	1 cut(s)	1371
AccI	GTMKAC	1 cut(s)	472
AccII	CGCG	1 cut(s)	72
AccIII	TCCGGA	1 cut(s)	212
AciI	CCGC	5 cut(s)	70, 132, 359, 407, 1146
AclWI	GGATC	3 cut(s)	232, 752, 767
AcoI	YGGCCR	1 cut(s)	1096
AcsI	RAATTY	2 cut(s)	398, 1576
AcuI	CTGAAG	4 cut(s)	105, 1019, 1026, 1223
AfaI	GTAC	4 cut(s)	353, 365, 1457, 1555
AfiI	CCNNNNNNNGG	4 cut(s)	24, 247, 289, 336
AflIII	ACRYGT	1 cut(s)	703
AgsI	TTSAA	6 cut(s)	93, 590, 620, 1219, 1270, 1494
AhlI	ACTAGT	1 cut(s)	1498
AjnI	CCWGG	3 cut(s)	225, 417, 1110
AjuI	GAANNNNNNNTTGG	2 cut(s)	132, 164
AluBI	AGCT	8 cut(s)	89, 424, 974, 1057, 1127, 1137, 1415, 1547
AluI	AGCT	8 cut(s)	89, 424, 974, 1057, 1127, 1137, 1415, 1547
Alw21I	GWGCWC	1 cut(s)	958
Alw26I	GTCTC	5 cut(s)	79, 683, 1013, 1337, 1507
AlwI	GGATC	3 cut(s)	232, 752, 767
Ama87I	CYCGRG	1 cut(s)	23
Aor13HI	TCCGGA	1 cut(s)	212
AoxI	GGCC	5 cut(s)	20, 414, 600, 722, 1096
ApeKI	GCWGC	7 cut(s)	545, 594, 713, 716, 974, 1091, 1415
ApoI	RAATTY	2 cut(s)	398, 1576
AseI	ATTAAT	1 cut(s)	491
Asp700I	GAANNNNTTC	4 cut(s)	201, 612, 882, 1236
AspLEI	GCGC	3 cut(s)	233, 253, 828
AspS9I	GGNCC	8 cut(s)	21, 215, 292, 415, 601, 641, 864, 1148
AsuC2I	CCSGG	4 cut(s)	19, 24, 25, 599
AsuHPI	GGTGA	5 cut(s)	133, 151, 863, 1090, 1196
AvaI	CYCGRG	1 cut(s)	23
AvaII	GGWCC	5 cut(s)	215, 292, 641, 864, 1148
BanI	GGYRCC	1 cut(s)	1371
BanII	GRGCYC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	958
BbvCI	CCTCAGC	1 cut(s)	1133
BbvI	GCAGC	7 cut(s)	532, 581, 725, 728, 961, 1103, 1402
BccI	CCATC	5 cut(s)	387, 667, 784, 962, 1184
BceAI	ACGGC	3 cut(s)	131, 264, 1083
BcgI	CGANNNNNNTGC	6 cut(s)	163, 197, 896, 930, 956, 990
BciT130I	CCWGG	3 cut(s)	227, 419, 1112
BcnI	CCSGG	4 cut(s)	19, 24, 25, 599
BcoDI	GTCTC	5 cut(s)	79, 683, 1013, 1337, 1507
BcuI	ACTAGT	1 cut(s)	1498
BfaI	CTAG	5 cut(s)	710, 804, 1008, 1499, 1544
BfmI	CTRYAG	1 cut(s)	975
BfoI	RGCGCY	2 cut(s)	234, 254
BglII	AGATCT	1 cut(s)	1477
BisI	GCNGC	8 cut(s)	133, 546, 595, 714, 717, 975, 1092, 1416
BlsI	GCNGC	8 cut(s)	134, 547, 596, 715, 718, 976, 1093, 1417
Bme1390I	CCNGG	7 cut(s)	19, 24, 25, 227, 419, 599, 1112
Bme18I	GGWCC	5 cut(s)	215, 292, 641, 864, 1148
BmeT110I	CYCGRG	1 cut(s)	23
BmgT120I	GGNCC	8 cut(s)	21, 215, 292, 415, 601, 641, 864, 1148
BmiI	GGNNCC	3 cut(s)	603, 865, 1373
BmrFI	CCNGG	7 cut(s)	19, 24, 25, 227, 419, 599, 1112
BmsI	GCATC	3 cut(s)	144, 1051, 1276
Bpu10I	CCTNAGC	1 cut(s)	1133
BpuEI	CTTGAG	3 cut(s)	482, 534, 663
BpuMI	CCSGG	4 cut(s)	19, 24, 25, 599
BsaI	GGTCTC	2 cut(s)	683, 1013
BsaJI	CCNNGG	5 cut(s)	23, 226, 330, 417, 1110
BsaWI	WCCGGW	1 cut(s)	212
BsaXI	ACNNNNNCTCC	2 cut(s)	963, 993
Bsc4I	CCNNNNNNNGG	4 cut(s)	24, 247, 289, 336
Bse118I	RCCGGY	1 cut(s)	1094
Bse1I	ACTGG	1 cut(s)	1567
Bse3DI	GCAATG	1 cut(s)	354
BseAI	TCCGGA	1 cut(s)	212
BseBI	CCWGG	3 cut(s)	227, 419, 1112
BseDI	CCNNGG	5 cut(s)	23, 226, 330, 417, 1110
BseGI	GGATG	7 cut(s)	135, 1066, 1120, 1183, 1195, 1201, 1291
BseLI	CCNNNNNNNGG	4 cut(s)	24, 247, 289, 336
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	1147
BseNI	ACTGG	1 cut(s)	1567
BseRI	GAGGAG	1 cut(s)	1179
BseX3I	CGGCCG	1 cut(s)	1096
BseXI	GCAGC	7 cut(s)	532, 581, 725, 728, 961, 1103, 1402
BseYI	CCCAGC	2 cut(s)	261, 335
BsgI	GTGCAG	1 cut(s)	1110
Bsh1236I	CGCG	1 cut(s)	72
Bsh1285I	CGRYCG	2 cut(s)	245, 1099
BshFI	GGCC	5 cut(s)	22, 416, 602, 724, 1098
BshNI	GGYRCC	1 cut(s)	1371
BsiEI	CGRYCG	2 cut(s)	245, 1099
BsiHKAI	GWGCWC	1 cut(s)	958
BsiHKCI	CYCGRG	1 cut(s)	23
BsiSI	CCGG	5 cut(s)	19, 24, 213, 599, 1095
BslI	CCNNNNNNNGG	4 cut(s)	24, 247, 289, 336
BsmAI	GTCTC	5 cut(s)	79, 683, 1013, 1337, 1507
BsmBI	CGTCTC	1 cut(s)	79
BsmI	GAATGC	2 cut(s)	547, 1017
BsnI	GGCC	5 cut(s)	22, 416, 602, 724, 1098
Bso31I	GGTCTC	2 cut(s)	683, 1013
BsoBI	CYCGRG	1 cut(s)	23
Bsp1286I	GDGCHC	2 cut(s)	45, 958
Bsp13I	TCCGGA	1 cut(s)	212
Bsp143I	GATC	6 cut(s)	153, 237, 242, 757, 772, 1477
BspACI	CCGC	5 cut(s)	70, 132, 359, 407, 1146
BspANI	GGCC	5 cut(s)	22, 416, 602, 724, 1098
BspCNI	CTCAG	1 cut(s)	1146
BspEI	TCCGGA	1 cut(s)	212
BspFNI	CGCG	1 cut(s)	72
BspLI	GGNNCC	3 cut(s)	603, 865, 1373
BspMAI	CTGCAG	1 cut(s)	979
BspPI	GGATC	3 cut(s)	232, 752, 767
BspT107I	GGYRCC	1 cut(s)	1371
BspTNI	GGTCTC	2 cut(s)	683, 1013
BsrDI	GCAATG	1 cut(s)	354
BsrFI	RCCGGY	1 cut(s)	1094
BsrI	ACTGG	1 cut(s)	1567
BssAI	RCCGGY	1 cut(s)	1094
BssECI	CCNNGG	5 cut(s)	23, 226, 330, 417, 1110
BssMI	GATC	6 cut(s)	153, 237, 242, 757, 772, 1477
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	3 cut(s)	227, 419, 1112
Bst4CI	ACNGT	4 cut(s)	60, 121, 219, 1460
Bst6I	CTCTTC	1 cut(s)	1384
BstC8I	GCNNGC	2 cut(s)	894, 1096
BstDEI	CTNAG	4 cut(s)	386, 669, 923, 1133
BstF5I	GGATG	7 cut(s)	135, 1066, 1120, 1183, 1195, 1201, 1291
BstFNI	CGCG	1 cut(s)	72
BstH2I	RGCGCY	2 cut(s)	234, 254
BstHHI	GCGC	3 cut(s)	233, 253, 828
BstKTI	GATC	6 cut(s)	156, 240, 245, 760, 775, 1480
BstMAI	GTCTC	5 cut(s)	79, 683, 1013, 1337, 1507
BstMBI	GATC	6 cut(s)	153, 237, 242, 757, 772, 1477
BstMCI	CGRYCG	2 cut(s)	245, 1099
BstMWI	GCNNNNNNNGC	3 cut(s)	413, 674, 1143
BstNI	CCWGG	3 cut(s)	227, 419, 1112
BstSCI	CCNGG	7 cut(s)	17, 22, 23, 225, 417, 597, 1110
BstSFI	CTRYAG	1 cut(s)	975
BstUI	CGCG	1 cut(s)	72
BstV1I	GCAGC	7 cut(s)	532, 581, 725, 728, 961, 1103, 1402
BstX2I	RGATCY	2 cut(s)	757, 1477
BstYI	RGATCY	2 cut(s)	757, 1477
BstZI	CGGCCG	1 cut(s)	1096
BsuRI	GGCC	5 cut(s)	22, 416, 602, 724, 1098
BtsCI	GGATG	7 cut(s)	135, 1066, 1120, 1183, 1195, 1201, 1291
BtsI	GCAGTG	1 cut(s)	999
BtsIMutI	CAGTG	1 cut(s)	999
Cac8I	GCNNGC	2 cut(s)	894, 1096
CfoI	GCGC	3 cut(s)	233, 253, 828
Cfr10I	RCCGGY	1 cut(s)	1094
Cfr13I	GGNCC	8 cut(s)	21, 215, 292, 415, 601, 641, 864, 1148
Cfr9I	CCCGGG	1 cut(s)	23
CpoI	CGGWCCG	1 cut(s)	215
CseI	GACGC	2 cut(s)	61, 295
Csp6I	GTAC	4 cut(s)	352, 364, 1456, 1554
CspI	CGGWCCG	1 cut(s)	215
CviAII	CATG	5 cut(s)	467, 860, 962, 1528, 1535
CviQI	GTAC	4 cut(s)	352, 364, 1456, 1554
DdeI	CTNAG	4 cut(s)	386, 669, 923, 1133
DpnI	GATC	6 cut(s)	155, 239, 244, 759, 774, 1479
DpnII	GATC	6 cut(s)	153, 237, 242, 757, 772, 1477
DraI	TTTAAA	1 cut(s)	1053
DrdI	GACNNNNNNGTC	1 cut(s)	1318
DseDI	GACNNNNNNGTC	1 cut(s)	1318
EaeI	YGGCCR	1 cut(s)	1096
EagI	CGGCCG	1 cut(s)	1096
Eam1104I	CTCTTC	1 cut(s)	1384
EarI	CTCTTC	1 cut(s)	1384
EclXI	CGGCCG	1 cut(s)	1096
Eco130I	CCWWGG	1 cut(s)	330
Eco147I	AGGCCT	1 cut(s)	724
Eco24I	GRGCYC	1 cut(s)	45
Eco31I	GGTCTC	2 cut(s)	683, 1013
Eco47I	GGWCC	5 cut(s)	215, 292, 641, 864, 1148
Eco52I	CGGCCG	1 cut(s)	1096
Eco57I	CTGAAG	4 cut(s)	105, 1019, 1026, 1223
Eco88I	CYCGRG	1 cut(s)	23
EcoRII	CCWGG	3 cut(s)	225, 417, 1110
EcoT14I	CCWWGG	1 cut(s)	330
EcoT38I	GRGCYC	1 cut(s)	45
ErhI	CCWWGG	1 cut(s)	330
Esp3I	CGTCTC	1 cut(s)	79
FaeI	CATG	5 cut(s)	470, 863, 965, 1531, 1538
FalI	AAGNNNNNCTT	2 cut(s)	870, 902
FatI	CATG	5 cut(s)	466, 859, 961, 1527, 1534
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	472
Fnu4HI	GCNGC	8 cut(s)	133, 546, 595, 714, 717, 975, 1092, 1416
FokI	GGATG	7 cut(s)	122, 1073, 1127, 1190, 1202, 1208, 1298
FriOI	GRGCYC	1 cut(s)	45
Fsp4HI	GCNGC	8 cut(s)	133, 546, 595, 714, 717, 975, 1092, 1416
FspBI	CTAG	5 cut(s)	710, 804, 1008, 1499, 1544
GlaI	GCGC	3 cut(s)	232, 252, 827
GluI	GCNGC	8 cut(s)	133, 546, 595, 714, 717, 975, 1092, 1416
GsaI	CCCAGC	2 cut(s)	265, 339
HaeII	RGCGCY	2 cut(s)	234, 254
HaeIII	GGCC	5 cut(s)	22, 416, 602, 724, 1098
HapII	CCGG	5 cut(s)	19, 24, 213, 599, 1095
HgaI	GACGC	2 cut(s)	61, 295
HhaI	GCGC	3 cut(s)	233, 253, 828
Hin1II	CATG	5 cut(s)	470, 863, 965, 1531, 1538
Hin6I	GCGC	3 cut(s)	231, 251, 826
HinP1I	GCGC	3 cut(s)	231, 251, 826
HincII	GTYRAC	1 cut(s)	1213
HindII	GTYRAC	1 cut(s)	1213
HindIII	AAGCTT	2 cut(s)	87, 1125
HinfI	GANTC	5 cut(s)	286, 326, 883, 1037, 1256
HpaII	CCGG	5 cut(s)	19, 24, 213, 599, 1095
HphI	GGTGA	5 cut(s)	133, 151, 863, 1090, 1196
Hpy166II	GTNNAC	5 cut(s)	364, 458, 473, 1151, 1213
Hpy188III	TCNNGA	7 cut(s)	213, 271, 283, 551, 617, 761, 1571
Hpy8I	GTNNAC	5 cut(s)	364, 458, 473, 1151, 1213
Hpy99I	CGWCG	2 cut(s)	185, 250
HpyAV	CCTTC	3 cut(s)	212, 632, 994
HpyCH4III	ACNGT	4 cut(s)	60, 121, 219, 1460
HpyCH4IV	ACGT	1 cut(s)	703
HpyCH4V	TGCA	6 cut(s)	48, 438, 977, 1015, 1091, 1527
HpyF10VI	GCNNNNNNNGC	3 cut(s)	413, 674, 1143
HpyF3I	CTNAG	4 cut(s)	386, 669, 923, 1133
HpySE526I	ACGT	1 cut(s)	703
Hsp92II	CATG	5 cut(s)	470, 863, 965, 1531, 1538
HspAI	GCGC	3 cut(s)	231, 251, 826
Kpn2I	TCCGGA	1 cut(s)	212
KroI	GCCGGC	1 cut(s)	1094
KroNI	GCCGGC	1 cut(s)	1096
Kzo9I	GATC	6 cut(s)	153, 237, 242, 757, 772, 1477
LmnI	GCTCC	2 cut(s)	421, 971
Lsp1109I	GCAGC	7 cut(s)	532, 581, 725, 728, 961, 1103, 1402
LweI	GCATC	3 cut(s)	144, 1051, 1276
MaeI	CTAG	5 cut(s)	710, 804, 1008, 1499, 1544
MaeII	ACGT	1 cut(s)	703
MaeIII	GTNAC	5 cut(s)	7, 121, 571, 1305, 1591
MalI	GATC	6 cut(s)	155, 239, 244, 759, 774, 1479
MboI	GATC	6 cut(s)	153, 237, 242, 757, 772, 1477
MfeI	CAATTG	1 cut(s)	301
MflI	RGATCY	2 cut(s)	757, 1477
MhlI	GDGCHC	2 cut(s)	45, 958
MlyI	GAGTC	2 cut(s)	335, 1265
MroI	TCCGGA	1 cut(s)	212
MroNI	GCCGGC	1 cut(s)	1094
MroXI	GAANNNNTTC	4 cut(s)	201, 612, 882, 1236
MseI	TTAA	9 cut(s)	221, 342, 491, 746, 986, 1052, 1392, 1422, 1581
MslI	CAYNNNNRTG	3 cut(s)	359, 966, 1366
MspA1I	CMGCKG	1 cut(s)	132
MspI	CCGG	5 cut(s)	19, 24, 213, 599, 1095
MspR9I	CCNGG	7 cut(s)	19, 24, 25, 227, 419, 599, 1112
MunI	CAATTG	1 cut(s)	301
Mva1269I	GAATGC	2 cut(s)	547, 1017
MvaI	CCWGG	3 cut(s)	227, 419, 1112
MvnI	CGCG	1 cut(s)	72
MwoI	GCNNNNNNNGC	3 cut(s)	413, 674, 1143
NaeI	GCCGGC	1 cut(s)	1096
NciI	CCSGG	4 cut(s)	19, 24, 25, 599
NdeII	GATC	6 cut(s)	153, 237, 242, 757, 772, 1477
NgoMIV	GCCGGC	1 cut(s)	1094
NlaIII	CATG	5 cut(s)	470, 863, 965, 1531, 1538
NlaIV	GGNNCC	3 cut(s)	603, 865, 1373
NmuCI	GTSAC	3 cut(s)	7, 121, 571
PceI	AGGCCT	1 cut(s)	724
PcsI	WCGNNNNNNNCGW	1 cut(s)	177
PctI	GAATGC	2 cut(s)	547, 1017
PdiI	GCCGGC	1 cut(s)	1096
PdmI	GAANNNNTTC	4 cut(s)	201, 612, 882, 1236
PfeI	GAWTC	3 cut(s)	286, 883, 1037
PkrI	GCNGC	8 cut(s)	134, 547, 596, 715, 718, 976, 1093, 1417
Ple19I	CGATCG	1 cut(s)	245
PleI	GAGTC	2 cut(s)	334, 1264
PpsI	GAGTC	2 cut(s)	334, 1264
PshBI	ATTAAT	1 cut(s)	491
PsiI	TTATAA	1 cut(s)	1071
Psp6I	CCWGG	3 cut(s)	225, 417, 1110
PspFI	CCCAGC	2 cut(s)	261, 335
PspGI	CCWGG	3 cut(s)	225, 417, 1110
PspN4I	GGNNCC	3 cut(s)	603, 865, 1373
PspPI	GGNCC	8 cut(s)	21, 215, 292, 415, 601, 641, 864, 1148
PstI	CTGCAG	1 cut(s)	979
PsuI	RGATCY	2 cut(s)	757, 1477
PvuI	CGATCG	1 cut(s)	245
RsaI	GTAC	4 cut(s)	353, 365, 1457, 1555
RsaNI	GTAC	4 cut(s)	352, 364, 1456, 1554
RseI	CAYNNNNRTG	3 cut(s)	359, 966, 1366
Rsr2I	CGGWCCG	1 cut(s)	215
RsrII	CGGWCCG	1 cut(s)	215
SaqAI	TTAA	9 cut(s)	221, 342, 491, 746, 986, 1052, 1392, 1422, 1581
SatI	GCNGC	8 cut(s)	133, 546, 595, 714, 717, 975, 1092, 1416
Sau3AI	GATC	6 cut(s)	153, 237, 242, 757, 772, 1477
Sau96I	GGNCC	8 cut(s)	21, 215, 292, 415, 601, 641, 864, 1148
SchI	GAGTC	2 cut(s)	335, 1265
ScrFI	CCNGG	7 cut(s)	19, 24, 25, 227, 419, 599, 1112
SduI	GDGCHC	2 cut(s)	45, 958
SfaNI	GCATC	3 cut(s)	144, 1051, 1276
SfcI	CTRYAG	1 cut(s)	975
SinI	GGWCC	5 cut(s)	215, 292, 641, 864, 1148
SmaI	CCCGGG	1 cut(s)	25
SmiMI	CAYNNNNRTG	3 cut(s)	359, 966, 1366
SmlI	CTYRAG	3 cut(s)	461, 549, 678
SmoI	CTYRAG	3 cut(s)	461, 549, 678
SpeI	ACTAGT	1 cut(s)	1498
SseBI	AGGCCT	1 cut(s)	724
SsiI	CCGC	5 cut(s)	70, 132, 359, 407, 1146
SspI	AATATT	1 cut(s)	1299
SspMI	CTAG	5 cut(s)	710, 804, 1008, 1499, 1544
StuI	AGGCCT	1 cut(s)	724
StyD4I	CCNGG	7 cut(s)	17, 22, 23, 225, 417, 597, 1110
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	4 cut(s)	60, 121, 219, 1460
TaiI	ACGT	1 cut(s)	706
TaqI	TCGA	3 cut(s)	245, 382, 1259
TatI	WGTACW	3 cut(s)	351, 1455, 1553
TauI	GCSGC	1 cut(s)	135
TfiI	GAWTC	3 cut(s)	286, 883, 1037
Tru1I	TTAA	9 cut(s)	221, 342, 491, 746, 986, 1052, 1392, 1422, 1581
Tru9I	TTAA	9 cut(s)	221, 342, 491, 746, 986, 1052, 1392, 1422, 1581
TscAI	CASTG	1 cut(s)	999
TseFI	GTSAC	3 cut(s)	7, 121, 571
TseI	GCWGC	7 cut(s)	545, 594, 713, 716, 974, 1091, 1415
Tsp45I	GTSAC	3 cut(s)	7, 121, 571
TspDTI	ATGAA	1 cut(s)	901
TspMI	CCCGGG	1 cut(s)	23
TspRI	CASTG	1 cut(s)	999
VpaK11BI	GGWCC	5 cut(s)	215, 292, 641, 864, 1148
VspI	ATTAAT	1 cut(s)	491
XapI	RAATTY	2 cut(s)	398, 1576
XmaI	CCCGGG	1 cut(s)	23
XmiI	GTMKAC	1 cut(s)	472
XmnI	GAANNNNTTC	4 cut(s)	201, 612, 882, 1236
XspI	CTAG	5 cut(s)	710, 804, 1008, 1499, 1544

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.