Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0002788

Physical Location & Seq

Genomic Coordinates Forward (+)

55046573 .. 55051424

Gene Structure 4852 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000014582

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGACGGTGACTAACAACGGCATCCAATACGCCGTTCAGATCATCACCAAACACTTCGGCAAACCCGTCGCTAAAGTATGCGAGACCCTTCTGAAATCCGGACCGCTAAACCTGGGTGCCTTAATCCGATCGACGGCGCTCACTCCCCAGCAAGTCAAGAACTCTCTCCTGATTCTGGTTCAGCACAATTGCGTCCAGCCCTTTACCCAAGAGTCCAAGGCTGGGCTTAACGTTCAGTACATTGCGGTGTACGATAACATACTCCATCGCCTTAGGTTTGCGAAATTTCTGGCGGTTGTGGCCCAGGAGCTTGATGATGATTGCAAACAACTTCTTGCTGGTTTACTCGAGCATGGTAGACTTACACAGCAACAGTTAATGGACAGAGCCAATCAGAAATCCAAATCAAATAGTAGTCAAGTTCAGAATGCTGCTCAAGATAACTTTGTTAGACTTGTGACTGCCCGTTTTGTTGAACGATGCCCGGCCCCTGAACCACTTCTTGAAGAAGCACCTGAACAAGAACGTCCAAAGAAACCACGCACTAAACATGCTAAGATGGCTGAAGTATCAGAGACCATAGAACAACGTGTTCTAGCAGCAGCAAGGCCTATGGAAGCAATAAGATTCTTAATTATGACAGATGCAGAAACTGATGGTCCATCACAAAAAAGTGAGAATATTTCCTCTAGTATGAGTGTTGGGGGGAAGCGCAAGTTTGATGATTTGGATATTGGTGAAGAACATGGGTCTAATGATAGGGAAGTGATTCTTTGGCGTGCTAATTTTGAGCAGTTCATTCGTTGTCTAAGGCATAAGGTTTGTGTTGAGAATGTTAGAGCACGATATAACGATGACGATGAAGCTGCAGTTATGTTAAGAGCAATGCTGAAGGCAACTAGAACTGCAGAGACCAAAGTGAAAACAGATTATTCAGGTACGCTGGAATCTAGGAAAAAGGATTATGTCAGCGCTTCCCTCAGCTTGTTGTGCGGTGCACCTCTTGTAACAGGAGCATATGAGGATGAGGGTGAGGATGGGGATGTGCCATATAGCGTTGCCTTGAAGAAAATTATAGAACTGCTTCAGAATGATGAGGTGGAGTTGATTGTTTTGAAAAGATATGGAAAGGATGCTTATAGCATATTTAGGTTACTGACAAAGCAGTCAAACGCTGGTCGGTTTTTTGAGACAGATATGATATCAAAAGAGGCCTTTGTTGACAAAAATGAAGCACCTAAGATTCTTTATAAGCTCTGGAAGGATGACTACGTTCATATGGAGAAATTATCATTGACAACAGCTAAACAGTCACAAGTCATGGTGTGGAAAGTACACAAGCGCATTGTTTGGGAACACGTTTTAGATGAAATGTACCATGCGGCGTACAATTTGGTTAAGCGATATGATCATGAGAGGGAAGAGAATAAGGAGGTTACAAATACCCCGAAGGAGAAACGCGTGGGTGAATTAGAGAAAAAAGCCAACCGGTTTCTAGGTGTCAGGAAAATCATGGCATTATCCCTTATGAAGCTTGATGATGCTCTCATGCTCTTCCATGACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005666 GO:0030880 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0055029 GO:0061695 GO:0070013 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03020 ko04623 ko05169 map00230 map00240 map01100 map03020 map04623 map05169

Pfam Domains

Protein Families

HTH_9 RNA_pol_Rpc82

Protein Analysis

523

Amino Acids

59.52

Weight (kDa)

8.25

Isoelectric Point (pI)

35.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HTH_9	PF08221	10 - 66	8.2e-18	RNA polymerase III subunit RPC82 helix-turn-helix domain
RNA_pol_Rpc82	PF05645	147 - 323	1.8e-14	RNA polymerase III subunit RPC82
WHD_POLR3C	PF22536	367 - 435	3.4e-08	POLR3C, C-terminal winged-helix domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49000
fragaria_vesca	FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570 FvH4_7g29570
malus_domestica	MD01G1202100.v1.1 MD07G1271200.v1.1 MD07G1271300.v1.1
prunus_persica	Prupe.2G295500_v2.0.a1
pyrus_communis	pycom01g21170 pycom07g24820 pycom16g25350
rosa_chinensis	RchiOBHm_Chr1g0377571 RchiOBHm_Chr6g0258831
rosa_laevigata	RLG00000014582 RLG00000026516
rosa_multiflora	Rmu_co8176084.1_g000001 Rmu_sc0002832.1_g000008 Rmu_sc0005290.1_g000010 Rmu_sc0012587.1_g000006 Rmu_sc0041364.1_g000001
rosa_roxburghii	Rroxscaffold_4G00281230 Rroxscaffold_7G00206100
rosa_rugosa	Rorug01G0403500 Rorug01G0403500 Rorug05G0583700
rosa_samantha	Rh1AG429300 Rh1BG380000 Rh1CG394200 Rh1DG411200 Rh6AG100200 Rh6BG091700 Rh6CG089200 Rh6DG083500
rosa_wichuraiana	Rw1G036950 Rw6G008680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1251
AasI	GACNNNNNNGTC	1 cut(s)	1165
AccB1I	GGYRCC	1 cut(s)	116
AccI	GTMKAC	1 cut(s)	358
AccII	CGCG	1 cut(s)	1461
AccIII	TCCGGA	1 cut(s)	98
AciI	CCGC	5 cut(s)	104, 245, 293, 993, 1382
AclI	AACGTT	1 cut(s)	231
AcsI	RAATTY	1 cut(s)	284
AcuI	CTGAAG	3 cut(s)	585, 911, 1070
AfaI	GTAC	6 cut(s)	239, 251, 940, 1335, 1376, 1388
AfeI	AGCGCT	1 cut(s)	973
AfiI	CCNNNNNNNGG	3 cut(s)	133, 175, 222
AflIII	ACRYGT	3 cut(s)	589, 1357, 1459
AgeI	ACCGGT	1 cut(s)	1488
AgsI	TTSAA	4 cut(s)	476, 506, 1066, 1117
AjnI	CCWGG	2 cut(s)	111, 303
AjuI	GAANNNNNNNTTGG	2 cut(s)	18, 50
AluBI	AGCT	6 cut(s)	310, 866, 984, 1255, 1304, 1534
AluI	AGCT	6 cut(s)	310, 866, 984, 1255, 1304, 1534
Alw21I	GWGCWC	2 cut(s)	844, 1000
Alw26I	GTCTC	4 cut(s)	77, 569, 905, 1184
Alw44I	GTGCAC	1 cut(s)	996
AlwNI	CAGNNNCTG	1 cut(s)	653
Ama87I	CYCGRG	1 cut(s)	347
Aor13HI	TCCGGA	1 cut(s)	98
Aor51HI	AGCGCT	1 cut(s)	973
AoxI	GGCC	4 cut(s)	300, 486, 608, 1212
ApaLI	GTGCAC	1 cut(s)	996
ApeKI	GCWGC	4 cut(s)	431, 599, 602, 866
ApoI	RAATTY	1 cut(s)	284
AsiGI	ACCGGT	1 cut(s)	1488
Asp700I	GAANNNNTTC	3 cut(s)	498, 768, 1083
AspLEI	GCGC	4 cut(s)	139, 714, 974, 1344
AspS9I	GGNCC	4 cut(s)	101, 301, 487, 659
AsuC2I	CCSGG	1 cut(s)	485
AsuHPI	GGTGA	5 cut(s)	19, 37, 749, 1043, 1478
AvaI	CYCGRG	1 cut(s)	347
AvaII	GGWCC	2 cut(s)	101, 659
AxyI	CCTNAGG	1 cut(s)	272
BaeGI	GKGCMC	1 cut(s)	1000
BanI	GGYRCC	1 cut(s)	116
BarI	GAAGNNNNNNTAC	2 cut(s)	1253, 1285
Bbv12I	GWGCWC	2 cut(s)	844, 1000
BbvCI	CCTCAGC	1 cut(s)	980
BbvI	GCAGC	4 cut(s)	418, 611, 614, 853
BccI	CCATC	5 cut(s)	273, 553, 650, 670, 1031
BceAI	ACGGC	3 cut(s)	17, 34, 150
BcgI	CGANNNNNNTGC	6 cut(s)	49, 83, 782, 816, 848, 882
BciT130I	CCWGG	2 cut(s)	113, 305
BclI	TGATCA	1 cut(s)	1408
BcnI	CCSGG	1 cut(s)	485
BcoDI	GTCTC	4 cut(s)	77, 569, 905, 1184
BfaI	CTAG	5 cut(s)	596, 690, 900, 951, 1496
BfmI	CTRYAG	2 cut(s)	867, 906
BfoI	RGCGCY	2 cut(s)	140, 975
BisI	GCNGC	5 cut(s)	432, 600, 603, 867, 1383
BlsI	GCNGC	5 cut(s)	433, 601, 604, 868, 1384
Bme1390I	CCNGG	3 cut(s)	113, 305, 485
Bme18I	GGWCC	2 cut(s)	101, 659
BmeT110I	CYCGRG	1 cut(s)	347
BmgT120I	GGNCC	4 cut(s)	101, 301, 487, 659
BmiI	GGNNCC	2 cut(s)	118, 489
BmrFI	CCNGG	3 cut(s)	113, 305, 485
BmsI	GCATC	5 cut(s)	30, 470, 634, 1123, 1531
Bpu10I	CCTNAGC	1 cut(s)	980
BpuEI	CTTGAG	1 cut(s)	420
BpuMI	CCSGG	1 cut(s)	485
BsaI	GGTCTC	3 cut(s)	77, 569, 905
BsaJI	CCNNGG	3 cut(s)	112, 216, 303
BsaWI	WCCGGW	2 cut(s)	98, 1488
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 175, 222
Bse118I	RCCGGY	1 cut(s)	1488
Bse21I	CCTNAGG	1 cut(s)	272
Bse3DI	GCAATG	2 cut(s)	240, 891
BseAI	TCCGGA	1 cut(s)	98
BseBI	CCWGG	2 cut(s)	113, 305
BseDI	CCNNGG	3 cut(s)	112, 216, 303
BseGI	GGATG	6 cut(s)	21, 1030, 1042, 1048, 1138, 1270
BseLI	CCNNNNNNNGG	3 cut(s)	133, 175, 222
BseMI	GCAATG	2 cut(s)	240, 891
BseMII	CTCAG	1 cut(s)	994
BseSI	GKGCMC	1 cut(s)	1000
BseXI	GCAGC	4 cut(s)	418, 611, 614, 853
BseYI	CCCAGC	2 cut(s)	147, 221
Bsh1236I	CGCG	1 cut(s)	1461
Bsh1285I	CGRYCG	1 cut(s)	131
BshFI	GGCC	4 cut(s)	302, 488, 610, 1214
BshNI	GGYRCC	1 cut(s)	116
BshTI	ACCGGT	1 cut(s)	1488
BsiEI	CGRYCG	1 cut(s)	131
BsiHKAI	GWGCWC	2 cut(s)	844, 1000
BsiHKCI	CYCGRG	1 cut(s)	347
BsiSI	CCGG	3 cut(s)	99, 485, 1489
BslI	CCNNNNNNNGG	3 cut(s)	133, 175, 222
BsmAI	GTCTC	4 cut(s)	77, 569, 905, 1184
BsmI	GAATGC	1 cut(s)	433
BsnI	GGCC	4 cut(s)	302, 488, 610, 1214
Bso31I	GGTCTC	3 cut(s)	77, 569, 905
BsoBI	CYCGRG	1 cut(s)	347
Bsp1286I	GDGCHC	2 cut(s)	844, 1000
Bsp13I	TCCGGA	1 cut(s)	98
Bsp143I	GATC	3 cut(s)	39, 128, 1408
BspACI	CCGC	5 cut(s)	104, 245, 293, 993, 1382
BspANI	GGCC	4 cut(s)	302, 488, 610, 1214
BspCNI	CTCAG	1 cut(s)	993
BspEI	TCCGGA	1 cut(s)	98
BspFNI	CGCG	1 cut(s)	1461
BspHI	TCATGA	1 cut(s)	1411
BspLI	GGNNCC	2 cut(s)	118, 489
BspMAI	CTGCAG	2 cut(s)	871, 910
BspQI	GCTCTTC	1 cut(s)	1559
BspT107I	GGYRCC	1 cut(s)	116
BspTNI	GGTCTC	3 cut(s)	77, 569, 905
BsrDI	GCAATG	2 cut(s)	240, 891
BsrFI	RCCGGY	1 cut(s)	1488
BssAI	RCCGGY	1 cut(s)	1488
BssECI	CCNNGG	3 cut(s)	112, 216, 303
BssMI	GATC	3 cut(s)	39, 128, 1408
BssT1I	CCWWGG	1 cut(s)	216
Bst2UI	CCWGG	2 cut(s)	113, 305
Bst4CI	ACNGT	3 cut(s)	7, 375, 1311
Bst6I	CTCTTC	2 cut(s)	1416, 1559
BstC8I	GCNNGC	1 cut(s)	780
BstDEI	CTNAG	5 cut(s)	272, 555, 809, 980, 1239
BstF5I	GGATG	6 cut(s)	21, 1030, 1042, 1048, 1138, 1270
BstFNI	CGCG	1 cut(s)	1461
BstH2I	RGCGCY	2 cut(s)	140, 975
BstHHI	GCGC	4 cut(s)	139, 714, 974, 1344
BstKTI	GATC	3 cut(s)	42, 131, 1411
BstMAI	GTCTC	4 cut(s)	77, 569, 905, 1184
BstMBI	GATC	3 cut(s)	39, 128, 1408
BstMCI	CGRYCG	1 cut(s)	131
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 560, 990
BstNI	CCWGG	2 cut(s)	113, 305
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	3 cut(s)	111, 303, 483
BstSFI	CTRYAG	2 cut(s)	867, 906
BstSLI	GKGCMC	1 cut(s)	1000
BstUI	CGCG	1 cut(s)	1461
BstV1I	GCAGC	4 cut(s)	418, 611, 614, 853
Bsu36I	CCTNAGG	1 cut(s)	272
BsuRI	GGCC	4 cut(s)	302, 488, 610, 1214
BtgZI	GCGATG	1 cut(s)	251
BtsCI	GGATG	6 cut(s)	21, 1030, 1042, 1048, 1138, 1270
Cac8I	GCNNGC	1 cut(s)	780
CaiI	CAGNNNCTG	1 cut(s)	653
CciI	TCATGA	1 cut(s)	1411
CfoI	GCGC	4 cut(s)	139, 714, 974, 1344
Cfr10I	RCCGGY	1 cut(s)	1488
Cfr13I	GGNCC	4 cut(s)	101, 301, 487, 659
CpoI	CGGWCCG	1 cut(s)	101
CseI	GACGC	1 cut(s)	181
Csp6I	GTAC	6 cut(s)	238, 250, 939, 1334, 1375, 1387
CspAI	ACCGGT	1 cut(s)	1488
CspI	CGGWCCG	1 cut(s)	101
CviAII	CATG	9 cut(s)	353, 551, 746, 1321, 1379, 1412, 1513, 1549, 1559
CviQI	GTAC	6 cut(s)	238, 250, 939, 1334, 1375, 1387
DdeI	CTNAG	5 cut(s)	272, 555, 809, 980, 1239
DpnI	GATC	3 cut(s)	41, 130, 1410
DpnII	GATC	3 cut(s)	39, 128, 1408
DrdI	GACNNNNNNGTC	1 cut(s)	1165
DseDI	GACNNNNNNGTC	1 cut(s)	1165
Eam1104I	CTCTTC	2 cut(s)	1416, 1559
EarI	CTCTTC	2 cut(s)	1416, 1559
Eco130I	CCWWGG	1 cut(s)	216
Eco147I	AGGCCT	2 cut(s)	610, 1214
Eco31I	GGTCTC	3 cut(s)	77, 569, 905
Eco32I	GATATC	1 cut(s)	1203
Eco47I	GGWCC	2 cut(s)	101, 659
Eco47III	AGCGCT	1 cut(s)	973
Eco57I	CTGAAG	3 cut(s)	585, 911, 1070
Eco81I	CCTNAGG	1 cut(s)	272
Eco88I	CYCGRG	1 cut(s)	347
EcoRII	CCWGG	2 cut(s)	111, 303
EcoRV	GATATC	1 cut(s)	1203
EcoT14I	CCWWGG	1 cut(s)	216
ErhI	CCWWGG	1 cut(s)	216
FaeI	CATG	9 cut(s)	356, 554, 749, 1324, 1382, 1415, 1516, 1552, 1562
FalI	AAGNNNNNCTT	2 cut(s)	756, 788
FatI	CATG	9 cut(s)	352, 550, 745, 1320, 1378, 1411, 1512, 1548, 1558
FauNDI	CATATG	2 cut(s)	1018, 1278
FbaI	TGATCA	1 cut(s)	1408
FblI	GTMKAC	1 cut(s)	358
Fnu4HI	GCNGC	5 cut(s)	432, 600, 603, 867, 1383
FokI	GGATG	6 cut(s)	8, 1037, 1049, 1055, 1145, 1277
Fsp4HI	GCNGC	5 cut(s)	432, 600, 603, 867, 1383
FspBI	CTAG	5 cut(s)	596, 690, 900, 951, 1496
GlaI	GCGC	4 cut(s)	138, 713, 973, 1343
GluI	GCNGC	5 cut(s)	432, 600, 603, 867, 1383
GsaI	CCCAGC	2 cut(s)	151, 225
HaeII	RGCGCY	2 cut(s)	140, 975
HaeIII	GGCC	4 cut(s)	302, 488, 610, 1214
HapII	CCGG	3 cut(s)	99, 485, 1489
HgaI	GACGC	1 cut(s)	181
HhaI	GCGC	4 cut(s)	139, 714, 974, 1344
Hin1II	CATG	9 cut(s)	356, 554, 749, 1324, 1382, 1415, 1516, 1552, 1562
Hin6I	GCGC	4 cut(s)	137, 712, 972, 1342
HinP1I	GCGC	4 cut(s)	137, 712, 972, 1342
HincII	GTYRAC	1 cut(s)	1222
HindII	GTYRAC	1 cut(s)	1222
HindIII	AAGCTT	1 cut(s)	1532
HinfI	GANTC	6 cut(s)	172, 212, 627, 769, 947, 1243
HpaII	CCGG	3 cut(s)	99, 485, 1489
HphI	GGTGA	5 cut(s)	19, 37, 749, 1043, 1478
Hpy166II	GTNNAC	6 cut(s)	250, 344, 359, 998, 1222, 1336
Hpy188I	TCNGA	8 cut(s)	39, 93, 128, 396, 426, 574, 1089, 1568
Hpy188III	TCNNGA	8 cut(s)	99, 157, 169, 437, 503, 1258, 1412, 1504
Hpy8I	GTNNAC	6 cut(s)	250, 344, 359, 998, 1222, 1336
Hpy99I	CGWCG	2 cut(s)	71, 136
HpyAV	CCTTC	4 cut(s)	98, 886, 1255, 1444
HpyCH4III	ACNGT	3 cut(s)	7, 375, 1311
HpyCH4IV	ACGT	5 cut(s)	231, 526, 589, 1272, 1359
HpyCH4V	TGCA	5 cut(s)	324, 647, 869, 908, 998
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 560, 990
HpyF3I	CTNAG	5 cut(s)	272, 555, 809, 980, 1239
HpySE526I	ACGT	5 cut(s)	231, 526, 589, 1272, 1359
Hsp92II	CATG	9 cut(s)	356, 554, 749, 1324, 1382, 1415, 1516, 1552, 1562
HspAI	GCGC	4 cut(s)	137, 712, 972, 1342
Kpn2I	TCCGGA	1 cut(s)	98
Ksp22I	TGATCA	1 cut(s)	1408
Kzo9I	GATC	3 cut(s)	39, 128, 1408
LguI	GCTCTTC	1 cut(s)	1559
LmnI	GCTCC	2 cut(s)	307, 1013
Lsp1109I	GCAGC	4 cut(s)	418, 611, 614, 853
LweI	GCATC	5 cut(s)	30, 470, 634, 1123, 1531
MaeI	CTAG	5 cut(s)	596, 690, 900, 951, 1496
MaeII	ACGT	5 cut(s)	231, 526, 589, 1272, 1359
MaeIII	GTNAC	6 cut(s)	7, 457, 1006, 1152, 1311, 1435
MalI	GATC	3 cut(s)	41, 130, 1410
MboI	GATC	3 cut(s)	39, 128, 1408
MboII	GAAGA	5 cut(s)	518, 752, 1078, 1433, 1546
MfeI	CAATTG	1 cut(s)	187
MhlI	GDGCHC	2 cut(s)	844, 1000
MluCI	AATT	8 cut(s)	187, 284, 633, 784, 1071, 1286, 1390, 1469
MluI	ACGCGT	1 cut(s)	1459
MlyI	GAGTC	1 cut(s)	221
MroI	TCCGGA	1 cut(s)	98
MroXI	GAANNNNTTC	3 cut(s)	498, 768, 1083
MseI	TTAA	6 cut(s)	122, 228, 377, 632, 878, 1398
MslI	CAYNNNNRTG	1 cut(s)	245
MspI	CCGG	3 cut(s)	99, 485, 1489
MspR9I	CCNGG	3 cut(s)	113, 305, 485
MunI	CAATTG	1 cut(s)	187
Mva1269I	GAATGC	1 cut(s)	433
MvaI	CCWGG	2 cut(s)	113, 305
MvnI	CGCG	1 cut(s)	1461
MwoI	GCNNNNNNNGC	3 cut(s)	299, 560, 990
NciI	CCSGG	1 cut(s)	485
NdeI	CATATG	2 cut(s)	1018, 1278
NdeII	GATC	3 cut(s)	39, 128, 1408
NlaIII	CATG	9 cut(s)	356, 554, 749, 1324, 1382, 1415, 1516, 1552, 1562
NlaIV	GGNNCC	2 cut(s)	118, 489
NmuCI	GTSAC	3 cut(s)	7, 457, 1311
NspI	RCATGY	1 cut(s)	554
PaeR7I	CTCGAG	1 cut(s)	347
PagI	TCATGA	1 cut(s)	1411
PceI	AGGCCT	2 cut(s)	610, 1214
PciSI	GCTCTTC	1 cut(s)	1559
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PctI	GAATGC	1 cut(s)	433
PdmI	GAANNNNTTC	3 cut(s)	498, 768, 1083
PfeI	GAWTC	5 cut(s)	172, 627, 769, 947, 1243
PinAI	ACCGGT	1 cut(s)	1488
PkrI	GCNGC	5 cut(s)	433, 601, 604, 868, 1384
Ple19I	CGATCG	1 cut(s)	131
PleI	GAGTC	1 cut(s)	220
PpsI	GAGTC	1 cut(s)	220
PsiI	TTATAA	1 cut(s)	1251
Psp1406I	AACGTT	1 cut(s)	231
Psp6I	CCWGG	2 cut(s)	111, 303
PspFI	CCCAGC	2 cut(s)	147, 221
PspGI	CCWGG	2 cut(s)	111, 303
PspN4I	GGNNCC	2 cut(s)	118, 489
PspPI	GGNCC	4 cut(s)	101, 301, 487, 659
PspXI	VCTCGAGB	1 cut(s)	347
PstI	CTGCAG	2 cut(s)	871, 910
PstNI	CAGNNNCTG	1 cut(s)	653
PvuI	CGATCG	1 cut(s)	131
RsaI	GTAC	6 cut(s)	239, 251, 940, 1335, 1376, 1388
RsaNI	GTAC	6 cut(s)	238, 250, 939, 1334, 1375, 1387
RseI	CAYNNNNRTG	1 cut(s)	245
Rsr2I	CGGWCCG	1 cut(s)	101
RsrII	CGGWCCG	1 cut(s)	101
SapI	GCTCTTC	1 cut(s)	1559
SaqAI	TTAA	6 cut(s)	122, 228, 377, 632, 878, 1398
SatI	GCNGC	5 cut(s)	432, 600, 603, 867, 1383
Sau3AI	GATC	3 cut(s)	39, 128, 1408
Sau96I	GGNCC	4 cut(s)	101, 301, 487, 659
SchI	GAGTC	1 cut(s)	221
ScrFI	CCNGG	3 cut(s)	113, 305, 485
SduI	GDGCHC	2 cut(s)	844, 1000
SfaNI	GCATC	5 cut(s)	30, 470, 634, 1123, 1531
SfcI	CTRYAG	2 cut(s)	867, 906
Sfr274I	CTCGAG	1 cut(s)	347
SinI	GGWCC	2 cut(s)	101, 659
SlaI	CTCGAG	1 cut(s)	347
SmiMI	CAYNNNNRTG	1 cut(s)	245
SmlI	CTYRAG	2 cut(s)	347, 435
SmoI	CTYRAG	2 cut(s)	347, 435
Sse9I	AATT	8 cut(s)	187, 284, 633, 784, 1071, 1286, 1390, 1469
SseBI	AGGCCT	2 cut(s)	610, 1214
SsiI	CCGC	5 cut(s)	104, 245, 293, 993, 1382
SspI	AATATT	1 cut(s)	682
SspMI	CTAG	5 cut(s)	596, 690, 900, 951, 1496
StuI	AGGCCT	2 cut(s)	610, 1214
StyD4I	CCNGG	3 cut(s)	111, 303, 483
StyI	CCWWGG	1 cut(s)	216
TaaI	ACNGT	3 cut(s)	7, 375, 1311
TaiI	ACGT	5 cut(s)	234, 529, 592, 1275, 1362
TaqI	TCGA	2 cut(s)	131, 348
TasI	AATT	8 cut(s)	187, 284, 633, 784, 1071, 1286, 1390, 1469
TatI	WGTACW	2 cut(s)	237, 1333
TauI	GCSGC	1 cut(s)	1385
TfiI	GAWTC	5 cut(s)	172, 627, 769, 947, 1243
Tru1I	TTAA	6 cut(s)	122, 228, 377, 632, 878, 1398
Tru9I	TTAA	6 cut(s)	122, 228, 377, 632, 878, 1398
TseFI	GTSAC	3 cut(s)	7, 457, 1311
TseI	GCWGC	4 cut(s)	431, 599, 602, 866
Tsp45I	GTSAC	3 cut(s)	7, 457, 1311
TspDTI	ATGAA	6 cut(s)	787, 876, 1245, 1265, 1383, 1544
VneI	GTGCAC	1 cut(s)	996
VpaK11BI	GGWCC	2 cut(s)	101, 659
XapI	RAATTY	1 cut(s)	284
XceI	RCATGY	1 cut(s)	554
XhoI	CTCGAG	1 cut(s)	347
XmiI	GTMKAC	1 cut(s)	358
XmnI	GAANNNNTTC	3 cut(s)	498, 768, 1083
XspI	CTAG	5 cut(s)	596, 690, 900, 951, 1496

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.