Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Reverse (-)

7796635 .. 7797132

Gene Structure 498 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1098400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 498 bp

ATGGACGAGGACTTCGATATGCTAGGGGCGGAGGATATGAACGAGGACTTTGATTTCCCCGACGAGGGGCCAGTCCTGAAGGTCGGTGAGGAGAAGGAGATCGGCCACCAAGGATTGAAGAAGAAGCTCCTAAAGGAAGGGGAAGGCTGGGACACTTCCAATAATGGCAATGAAGTTGAAGTTCATTATACTGGGACATTGCTGGACGGGACTCAGTTCGATTCGAGTCGCGACGGGGGGACTCCATTCAAGTTCACTCTAGGACAAGGTGAAGGCTTTTTGTTACCTTTTCAACTGCAATTTGATGAAATTAATGAGCTCTGCACTGTTGGGGGAATGCTATTTTCACTTGCATATTATGGGCTCTGCACTGTTGGGGGAATGCTCAGTGCTGGCGCTACCCATCTCGTAATCACGCATCTCGATGTCTTGAAAGATAATATGCAGATCTCAGTTGCTGGACGAAATCACTCTGACGCCACCATCACTGAGTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

166

Amino Acids

18.02

Weight (kDa)

4.25

Isoelectric Point (pI)

29.97

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	52 - 91	1.7e-10	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	231
AciI	CCGC	1 cut(s)	29
AcoI	YGGCCR	1 cut(s)	103
AcuI	CTGAAG	1 cut(s)	98
AcyI	GRCGYC	1 cut(s)	477
AdeI	CACNNNGTG	1 cut(s)	492
AfiI	CCNNNNNNNGG	3 cut(s)	64, 65, 66
AgsI	TTSAA	5 cut(s)	118, 179, 250, 293, 433
AluBI	AGCT	2 cut(s)	127, 319
AluI	AGCT	2 cut(s)	127, 319
Alw21I	GWGCWC	1 cut(s)	321
AlwNI	CAGNNNCTG	1 cut(s)	458
AoxI	GGCC	2 cut(s)	68, 103
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AseI	ATTAAT	1 cut(s)	312
AspLEI	GCGC	1 cut(s)	398
AspS9I	GGNCC	1 cut(s)	68
AsuHPI	GGTGA	2 cut(s)	98, 281
BanII	GRGCYC	2 cut(s)	321, 366
Bbv12I	GWGCWC	1 cut(s)	321
BccI	CCATC	2 cut(s)	411, 491
BfaI	CTAG	2 cut(s)	23, 260
BfoI	RGCGCY	1 cut(s)	399
BglII	AGATCT	1 cut(s)	447
BmgT120I	GGNCC	1 cut(s)	68
BmiI	GGNNCC	1 cut(s)	69
BmrI	ACTGGG	1 cut(s)	201
BmsI	GCATC	1 cut(s)	427
BmuI	ACTGGG	1 cut(s)	201
BsaHI	GRCGYC	1 cut(s)	477
BsaJI	CCNNGG	1 cut(s)	109
Bsc4I	CCNNNNNNNGG	3 cut(s)	64, 65, 66
Bse1I	ACTGG	2 cut(s)	71, 196
Bse3DI	GCAATG	2 cut(s)	175, 197
BseDI	CCNNGG	1 cut(s)	109
BseLI	CCNNNNNNNGG	3 cut(s)	64, 65, 66
BseMI	GCAATG	2 cut(s)	175, 197
BseMII	CTCAG	4 cut(s)	227, 400, 465, 480
BseNI	ACTGG	2 cut(s)	71, 196
BseRI	GAGGAG	1 cut(s)	104
BseYI	CCCAGC	1 cut(s)	147
BsgI	GTGCAG	2 cut(s)	307, 352
Bsh1236I	CGCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	70, 105
BsiHKAI	GWGCWC	1 cut(s)	321
BslFI	GGGAC	4 cut(s)	164, 208, 223, 253
BslI	CCNNNNNNNGG	3 cut(s)	64, 65, 66
BsmFI	GGGAC	4 cut(s)	164, 208, 223, 253
BsmI	GAATGC	2 cut(s)	342, 387
BsnI	GGCC	2 cut(s)	70, 105
Bsp1286I	GDGCHC	2 cut(s)	321, 366
Bsp143I	GATC	2 cut(s)	99, 447
Bsp68I	TCGCGA	1 cut(s)	231
BspACI	CCGC	1 cut(s)	29
BspANI	GGCC	2 cut(s)	70, 105
BspCNI	CTCAG	4 cut(s)	226, 399, 464, 481
BspFNI	CGCG	1 cut(s)	231
BspLI	GGNNCC	1 cut(s)	69
BsrDI	GCAATG	2 cut(s)	175, 197
BsrI	ACTGG	2 cut(s)	71, 196
BssECI	CCNNGG	1 cut(s)	109
BssMI	GATC	2 cut(s)	99, 447
BssNI	GRCGYC	1 cut(s)	477
BssT1I	CCWWGG	1 cut(s)	109
Bst4CI	ACNGT	2 cut(s)	328, 373
BstACI	GRCGYC	1 cut(s)	477
BstC8I	GCNNGC	1 cut(s)	394
BstDEI	CTNAG	4 cut(s)	213, 386, 451, 489
BstFNI	CGCG	1 cut(s)	231
BstH2I	RGCGCY	1 cut(s)	399
BstHHI	GCGC	1 cut(s)	398
BstKTI	GATC	2 cut(s)	102, 450
BstMBI	GATC	2 cut(s)	99, 447
BstUI	CGCG	1 cut(s)	231
BstX2I	RGATCY	1 cut(s)	447
BstYI	RGATCY	1 cut(s)	447
BsuRI	GGCC	2 cut(s)	70, 105
BtsIMutI	CAGTG	4 cut(s)	324, 369, 394, 486
BtuMI	TCGCGA	1 cut(s)	231
Cac8I	GCNNGC	1 cut(s)	394
CaiI	CAGNNNCTG	1 cut(s)	458
CfoI	GCGC	1 cut(s)	398
Cfr13I	GGNCC	1 cut(s)	68
CseI	GACGC	1 cut(s)	485
CviJI	RGCY	7 cut(s)	70, 105, 127, 147, 276, 319, 364
CviKI_1	RGCY	7 cut(s)	70, 105, 127, 147, 276, 319, 364
DdeI	CTNAG	4 cut(s)	213, 386, 451, 489
DpnI	GATC	2 cut(s)	101, 449
DpnII	GATC	2 cut(s)	99, 447
DraIII	CACNNNGTG	1 cut(s)	492
EaeI	YGGCCR	1 cut(s)	103
EciI	GGCGGA	1 cut(s)	44
Ecl136II	GAGCTC	1 cut(s)	319
Eco130I	CCWWGG	1 cut(s)	109
Eco24I	GRGCYC	2 cut(s)	321, 366
Eco53kI	GAGCTC	1 cut(s)	319
Eco57I	CTGAAG	1 cut(s)	98
EcoICRI	GAGCTC	1 cut(s)	319
EcoT14I	CCWWGG	1 cut(s)	109
EcoT38I	GRGCYC	2 cut(s)	321, 366
ErhI	CCWWGG	1 cut(s)	109
FaiI	YATR	6 cut(s)	20, 38, 189, 355, 360, 443
FaqI	GGGAC	4 cut(s)	164, 208, 223, 253
FriOI	GRGCYC	2 cut(s)	321, 366
FspBI	CTAG	2 cut(s)	23, 260
GlaI	GCGC	1 cut(s)	397
GsaI	CCCAGC	1 cut(s)	151
HaeII	RGCGCY	1 cut(s)	399
HaeIII	GGCC	2 cut(s)	70, 105
HgaI	GACGC	1 cut(s)	485
HhaI	GCGC	1 cut(s)	398
Hin1I	GRCGYC	1 cut(s)	477
Hin6I	GCGC	1 cut(s)	396
HinP1I	GCGC	1 cut(s)	396
HinfI	GANTC	4 cut(s)	211, 221, 226, 241
HphI	GGTGA	2 cut(s)	98, 281
Hpy166II	GTNNAC	1 cut(s)	255
Hpy188I	TCNGA	1 cut(s)	475
Hpy188III	TCNNGA	4 cut(s)	76, 230, 422, 430
Hpy8I	GTNNAC	1 cut(s)	255
Hpy99I	CGWCG	2 cut(s)	65, 236
HpyAV	CCTTC	5 cut(s)	73, 88, 131, 137, 266
HpyCH4III	ACNGT	2 cut(s)	328, 373
HpyCH4V	TGCA	5 cut(s)	298, 324, 353, 369, 445
HpyF3I	CTNAG	4 cut(s)	213, 386, 451, 489
Hsp92I	GRCGYC	1 cut(s)	477
HspAI	GCGC	1 cut(s)	396
Kzo9I	GATC	2 cut(s)	99, 447
LmnI	GCTCC	1 cut(s)	132
LpnPI	CCDG	7 cut(s)	84, 89, 133, 177, 188, 378, 444
LweI	GCATC	1 cut(s)	427
MaeI	CTAG	2 cut(s)	23, 260
MaeIII	GTNAC	1 cut(s)	282
MalI	GATC	2 cut(s)	101, 449
MboI	GATC	2 cut(s)	99, 447
MboII	GAAGA	2 cut(s)	130, 133
MflI	RGATCY	1 cut(s)	447
MhlI	GDGCHC	2 cut(s)	321, 366
MluCI	AATT	2 cut(s)	299, 309
MlyI	GAGTC	3 cut(s)	205, 235, 235
MnlI	CCTC	4 cut(s)	25, 37, 58, 82
MseI	TTAA	1 cut(s)	312
MslI	CAYNNNNRTG	1 cut(s)	423
Mva1269I	GAATGC	2 cut(s)	342, 387
MvnI	CGCG	1 cut(s)	231
NdeII	GATC	2 cut(s)	99, 447
NlaIV	GGNNCC	1 cut(s)	69
NruI	TCGCGA	1 cut(s)	231
PcsI	WCGNNNNNNNCGW	1 cut(s)	12
PctI	GAATGC	2 cut(s)	342, 387
PfeI	GAWTC	1 cut(s)	221
PleI	GAGTC	3 cut(s)	205, 234, 235
PpsI	GAGTC	3 cut(s)	205, 234, 235
PshBI	ATTAAT	1 cut(s)	312
Psp124BI	GAGCTC	1 cut(s)	321
PspFI	CCCAGC	1 cut(s)	147
PspN4I	GGNNCC	1 cut(s)	69
PspPI	GGNCC	1 cut(s)	68
PstNI	CAGNNNCTG	1 cut(s)	458
PsuI	RGATCY	1 cut(s)	447
RruI	TCGCGA	1 cut(s)	231
RseI	CAYNNNNRTG	1 cut(s)	423
SacI	GAGCTC	1 cut(s)	321
SaqAI	TTAA	1 cut(s)	312
Sau3AI	GATC	2 cut(s)	99, 447
Sau96I	GGNCC	1 cut(s)	68
SchI	GAGTC	3 cut(s)	205, 235, 235
SduI	GDGCHC	2 cut(s)	321, 366
SetI	ASST	5 cut(s)	84, 129, 271, 289, 321
SfaNI	GCATC	1 cut(s)	427
SmiMI	CAYNNNNRTG	1 cut(s)	423
Sse9I	AATT	2 cut(s)	299, 309
SsiI	CCGC	1 cut(s)	29
SspMI	CTAG	2 cut(s)	23, 260
SstI	GAGCTC	1 cut(s)	321
StyI	CCWWGG	1 cut(s)	109
TaaI	ACNGT	2 cut(s)	328, 373
TaqI	TCGA	4 cut(s)	15, 219, 224, 423
TasI	AATT	2 cut(s)	299, 309
TfiI	GAWTC	1 cut(s)	221
Tru1I	TTAA	1 cut(s)	312
Tru9I	TTAA	1 cut(s)	312
TscAI	CASTG	4 cut(s)	331, 376, 394, 493
TspDTI	ATGAA	4 cut(s)	53, 173, 186, 321
TspRI	CASTG	4 cut(s)	331, 376, 394, 493
VspI	ATTAAT	1 cut(s)	312
XspI	CTAG	2 cut(s)	23, 260

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.