Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Forward (+)

1702360 .. 1702803

Gene Structure 444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g01900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGAAGACGACTTTGATTTCTCAGCTGCCACCAACAGCCTCAACGACCCCGGTGACTTGGACCTTCCCGACGCCGAGGACGACGCAACTAGCCCAACTCTCAAGGTTGGTGATGAGAAGGAGATCGGGAAGAACGGCCTCGAGAAGAAGCTCCTTAAAGAGGGTGAAGGCTGGGACACTCCCGGCTCCGGCGACGAAGTTGAAGTGCATTACACTGGGACTCTGCTGGACGGAACCAAATTCGATTCGAGCCGTGACCGTGGGACCCCTTTCAAGTTCAATCTCGGACAAGGTGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_8

Protein Analysis

100

Amino Acids

10.68

Weight (kDa)

4.13

Isoelectric Point (pI)

17.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	239
AcyI	GRCGYC	1 cut(s)	72
AfiI	CCNNNNNNNGG	2 cut(s)	160, 188
AgsI	TTSAA	3 cut(s)	203, 274, 280
AluBI	AGCT	2 cut(s)	26, 151
AluI	AGCT	2 cut(s)	26, 151
Ama87I	CYCGRG	1 cut(s)	140
AoxI	GGCC	1 cut(s)	136
ApeKI	GCWGC	1 cut(s)	26
ApoI	RAATTY	1 cut(s)	239
AspS9I	GGNCC	2 cut(s)	61, 264
AsuC2I	CCSGG	2 cut(s)	51, 183
AsuHPI	GGTGA	3 cut(s)	65, 122, 176
AvaI	CYCGRG	1 cut(s)	140
AvaII	GGWCC	2 cut(s)	61, 264
BbsI	GAAGAC	1 cut(s)	12
BbvI	GCAGC	1 cut(s)	13
BceAI	ACGGC	2 cut(s)	151, 237
BcnI	CCSGG	2 cut(s)	51, 183
BfaI	CTAG	1 cut(s)	90
BisI	GCNGC	1 cut(s)	27
BlsI	GCNGC	1 cut(s)	28
Bme1390I	CCNGG	2 cut(s)	51, 183
Bme18I	GGWCC	2 cut(s)	61, 264
BmeT110I	CYCGRG	1 cut(s)	140
BmgT120I	GGNCC	2 cut(s)	61, 264
BmiI	GGNNCC	4 cut(s)	187, 235, 265, 266
BmrFI	CCNGG	2 cut(s)	51, 183
BmrI	ACTGGG	1 cut(s)	225
BmuI	ACTGGG	1 cut(s)	225
BpiI	GAAGAC	1 cut(s)	12
BpuEI	CTTGAG	1 cut(s)	86
BpuMI	CCSGG	2 cut(s)	51, 183
BsaHI	GRCGYC	1 cut(s)	72
BsaJI	CCNNGG	3 cut(s)	49, 75, 259
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 188
Bse1I	ACTGG	1 cut(s)	220
BseDI	CCNNGG	3 cut(s)	49, 75, 259
BseLI	CCNNNNNNNGG	2 cut(s)	160, 188
BseMII	CTCAG	1 cut(s)	36
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	1 cut(s)	13
BseYI	CCCAGC	1 cut(s)	171
BshFI	GGCC	1 cut(s)	138
BsiHKCI	CYCGRG	1 cut(s)	140
BsiSI	CCGG	3 cut(s)	51, 183, 189
BslFI	GGGAC	3 cut(s)	188, 232, 277
BslI	CCNNNNNNNGG	2 cut(s)	160, 188
BsmFI	GGGAC	3 cut(s)	188, 232, 277
BsnI	GGCC	1 cut(s)	138
BsoBI	CYCGRG	1 cut(s)	140
Bsp143I	GATC	1 cut(s)	123
BspANI	GGCC	1 cut(s)	138
BspCNI	CTCAG	1 cut(s)	35
BspLI	GGNNCC	4 cut(s)	187, 235, 265, 266
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	3 cut(s)	49, 75, 259
BssMI	GATC	1 cut(s)	123
BssNI	GRCGYC	1 cut(s)	72
Bst4CI	ACNGT	1 cut(s)	260
BstACI	GRCGYC	1 cut(s)	72
BstDEI	CTNAG	1 cut(s)	22
BstDSI	CCRYGG	1 cut(s)	259
BstENI	CCTNNNNNAGG	1 cut(s)	158
BstKTI	GATC	1 cut(s)	126
BstMBI	GATC	1 cut(s)	123
BstSCI	CCNGG	2 cut(s)	49, 181
BstV1I	GCAGC	1 cut(s)	13
BstV2I	GAAGAC	1 cut(s)	12
BsuRI	GGCC	1 cut(s)	138
BtgI	CCRYGG	1 cut(s)	259
BtsIMutI	CAGTG	1 cut(s)	213
Cfr13I	GGNCC	2 cut(s)	61, 264
CseI	GACGC	2 cut(s)	80, 92
CviJI	RGCY	8 cut(s)	26, 39, 93, 138, 151, 171, 186, 252
CviKI_1	RGCY	8 cut(s)	26, 39, 93, 138, 151, 171, 186, 252
DdeI	CTNAG	1 cut(s)	22
DpnI	GATC	1 cut(s)	125
DpnII	GATC	1 cut(s)	123
Eco47I	GGWCC	2 cut(s)	61, 264
Eco88I	CYCGRG	1 cut(s)	140
EcoNI	CCTNNNNNAGG	1 cut(s)	158
EcoO109I	RGGNCCY	1 cut(s)	264
FaqI	GGGAC	3 cut(s)	188, 232, 277
Fnu4HI	GCNGC	1 cut(s)	27
Fsp4HI	GCNGC	1 cut(s)	27
FspBI	CTAG	1 cut(s)	90
GluI	GCNGC	1 cut(s)	27
GsaI	CCCAGC	1 cut(s)	175
HaeIII	GGCC	1 cut(s)	138
HapII	CCGG	3 cut(s)	51, 183, 189
HgaI	GACGC	2 cut(s)	80, 92
Hin1I	GRCGYC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	220, 245
HpaII	CCGG	3 cut(s)	51, 183, 189
HphI	GGTGA	3 cut(s)	65, 122, 176
Hpy188I	TCNGA	1 cut(s)	287
Hpy188III	TCNNGA	3 cut(s)	68, 127, 142
Hpy99I	CGWCG	3 cut(s)	74, 86, 197
HpyAV	CCTTC	3 cut(s)	74, 112, 161
HpyCH4III	ACNGT	1 cut(s)	260
HpyCH4V	TGCA	1 cut(s)	208
HpyF3I	CTNAG	1 cut(s)	22
Hsp92I	GRCGYC	1 cut(s)	72
KflI	GGGWCCC	1 cut(s)	264
Kzo9I	GATC	1 cut(s)	123
LmnI	GCTCC	2 cut(s)	156, 191
LpnPI	CCDG	6 cut(s)	64, 157, 196, 201, 202, 212
Lsp1109I	GCAGC	1 cut(s)	13
MaeI	CTAG	1 cut(s)	90
MaeIII	GTNAC	2 cut(s)	53, 254
MalI	GATC	1 cut(s)	125
MboI	GATC	1 cut(s)	123
MboII	GAAGA	3 cut(s)	17, 142, 157
MluCI	AATT	1 cut(s)	239
MlyI	GAGTC	1 cut(s)	214
MnlI	CCTC	4 cut(s)	50, 70, 149, 154
MseI	TTAA	1 cut(s)	156
MspA1I	CMGCKG	1 cut(s)	26
MspI	CCGG	3 cut(s)	51, 183, 189
MspR9I	CCNGG	2 cut(s)	51, 183
NciI	CCSGG	2 cut(s)	51, 183
NdeII	GATC	1 cut(s)	123
NlaIV	GGNNCC	4 cut(s)	187, 235, 265, 266
NmeAIII	GCCGAG	1 cut(s)	100
NmuCI	GTSAC	2 cut(s)	53, 254
PaeR7I	CTCGAG	1 cut(s)	140
PcsI	WCGNNNNNNNCGW	1 cut(s)	78
PfeI	GAWTC	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	28
PleI	GAGTC	1 cut(s)	214
PpsI	GAGTC	1 cut(s)	214
PpuMI	RGGWCCY	1 cut(s)	264
Psp5II	RGGWCCY	1 cut(s)	264
PspFI	CCCAGC	1 cut(s)	171
PspN4I	GGNNCC	4 cut(s)	187, 235, 265, 266
PspPI	GGNCC	2 cut(s)	61, 264
PspPPI	RGGWCCY	1 cut(s)	264
PvuII	CAGCTG	1 cut(s)	26
SaqAI	TTAA	1 cut(s)	156
SatI	GCNGC	1 cut(s)	27
Sau3AI	GATC	1 cut(s)	123
Sau96I	GGNCC	2 cut(s)	61, 264
SchI	GAGTC	1 cut(s)	214
ScrFI	CCNGG	2 cut(s)	51, 183
SetI	ASST	5 cut(s)	28, 66, 108, 153, 295
Sfr274I	CTCGAG	1 cut(s)	140
SinI	GGWCC	2 cut(s)	61, 264
SlaI	CTCGAG	1 cut(s)	140
SmlI	CTYRAG	2 cut(s)	101, 140
SmoI	CTYRAG	2 cut(s)	101, 140
Sse9I	AATT	1 cut(s)	239
SspMI	CTAG	1 cut(s)	90
StyD4I	CCNGG	2 cut(s)	49, 181
TaaI	ACNGT	1 cut(s)	260
TaqI	TCGA	3 cut(s)	141, 243, 248
TasI	AATT	1 cut(s)	239
TfiI	GAWTC	1 cut(s)	245
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	53, 254
TseI	GCWGC	1 cut(s)	26
Tsp45I	GTSAC	2 cut(s)	53, 254
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	61, 264
XagI	CCTNNNNNAGG	1 cut(s)	158
XapI	RAATTY	1 cut(s)	239
XhoI	CTCGAG	1 cut(s)	140
XspI	CTAG	1 cut(s)	90

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.