Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001554.1

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Forward (+)

55976 .. 56581

Gene Structure 606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001554.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atggaaaacaaagtgggggagagaagaaaaggagagtcggtctcagaggtctcccccagctccgtcactgttggacgcatccaatttctgggtcaccaagcagtcgacggggaggagaaggagatcggaaagcagggattgaagaagaaactcctaaaggaaggtgaaggctgggatataccccgaatacatcacaccgggaatttggtggagttcgattcgagcggcgataggggaacatggatcagttcactcagacaaggtactaaagtatttgggtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_8

Protein Analysis

93

Amino Acids

10.25

Weight (kDa)

8.07

Isoelectric Point (pI)

30.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	88
AccBSI	CCGCTC	1 cut(s)	225
AccI	GTMKAC	1 cut(s)	105
AciI	CCGC	1 cut(s)	225
AclWI	GGATC	1 cut(s)	251
AcsI	RAATTY	1 cut(s)	202
AfaI	GTAC	1 cut(s)	265
AfiI	CCNNNNNNNGG	1 cut(s)	88
AgsI	TTSAA	1 cut(s)	142
AluBI	AGCT	1 cut(s)	60
AluI	AGCT	1 cut(s)	60
Alw26I	GTCTC	2 cut(s)	46, 55
AlwI	GGATC	1 cut(s)	251
ApoI	RAATTY	1 cut(s)	202
AsuC2I	CCSGG	1 cut(s)	199
AsuHPI	GGTGA	2 cut(s)	86, 176
BaeI	ACNNNNGTAYC	1 cut(s)	255
BcnI	CCSGG	1 cut(s)	199
BcoDI	GTCTC	2 cut(s)	46, 55
BisI	GCNGC	1 cut(s)	226
BlsI	GCNGC	1 cut(s)	227
Bme1390I	CCNGG	1 cut(s)	199
BmrFI	CCNGG	1 cut(s)	199
BmsI	GCATC	1 cut(s)	87
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BpuMI	CCSGG	1 cut(s)	199
BsaI	GGTCTC	2 cut(s)	46, 55
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	88
BseGI	GGATG	1 cut(s)	78
BseLI	CCNNNNNNNGG	1 cut(s)	88
BseMII	CTCAG	2 cut(s)	57, 268
BseRI	GAGGAG	1 cut(s)	128
BseYI	CCCAGC	2 cut(s)	56, 171
BsiSI	CCGG	1 cut(s)	198
BslI	CCNNNNNNNGG	1 cut(s)	88
BsmAI	GTCTC	2 cut(s)	46, 55
Bso31I	GGTCTC	2 cut(s)	46, 55
Bsp143I	GATC	2 cut(s)	123, 243
BspACI	CCGC	1 cut(s)	225
BspCNI	CTCAG	2 cut(s)	56, 267
BspPI	GGATC	1 cut(s)	251
BspTNI	GGTCTC	2 cut(s)	46, 55
BsrBI	CCGCTC	1 cut(s)	225
BssMI	GATC	2 cut(s)	123, 243
Bst4CI	ACNGT	1 cut(s)	70
BstDEI	CTNAG	2 cut(s)	43, 254
BstEII	GGTNACC	1 cut(s)	92
BstF5I	GGATG	1 cut(s)	78
BstKTI	GATC	2 cut(s)	126, 246
BstMAI	GTCTC	2 cut(s)	46, 55
BstMBI	GATC	2 cut(s)	123, 243
BstPI	GGTNACC	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	197
BtsCI	GGATG	1 cut(s)	78
BtsIMutI	CAGTG	1 cut(s)	66
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	264
CviAII	CATG	1 cut(s)	240
CviJI	RGCY	2 cut(s)	60, 171
CviKI_1	RGCY	2 cut(s)	60, 171
CviQI	GTAC	1 cut(s)	264
DdeI	CTNAG	2 cut(s)	43, 254
DpnI	GATC	2 cut(s)	125, 245
DpnII	GATC	2 cut(s)	123, 243
Eco31I	GGTCTC	2 cut(s)	46, 55
Eco91I	GGTNACC	1 cut(s)	92
EcoO65I	GGTNACC	1 cut(s)	92
FaeI	CATG	1 cut(s)	243
FaiI	YATR	2 cut(s)	179, 241
FatI	CATG	1 cut(s)	239
FblI	GTMKAC	1 cut(s)	105
Fnu4HI	GCNGC	1 cut(s)	226
FokI	GGATG	1 cut(s)	65
Fsp4HI	GCNGC	1 cut(s)	226
GluI	GCNGC	1 cut(s)	226
GsaI	CCCAGC	2 cut(s)	60, 175
HapII	CCGG	1 cut(s)	198
HgaI	GACGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	243
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	35, 218
HpaII	CCGG	1 cut(s)	198
HphI	GGTGA	2 cut(s)	86, 176
Hpy166II	GTNNAC	2 cut(s)	106, 251
Hpy188I	TCNGA	3 cut(s)	46, 128, 257
Hpy8I	GTNNAC	2 cut(s)	106, 251
Hpy99I	CGWCG	1 cut(s)	110
HpyAV	CCTTC	3 cut(s)	112, 155, 161
HpyCH4III	ACNGT	1 cut(s)	70
HpyF3I	CTNAG	2 cut(s)	43, 254
Hsp92II	CATG	1 cut(s)	243
Kzo9I	GATC	2 cut(s)	123, 243
LmnI	GCTCC	1 cut(s)	65
LpnPI	CCDG	5 cut(s)	70, 74, 119, 157, 211
LweI	GCATC	1 cut(s)	87
MaeIII	GTNAC	2 cut(s)	64, 92
MalI	GATC	2 cut(s)	125, 245
MbiI	CCGCTC	1 cut(s)	225
MboI	GATC	2 cut(s)	123, 243
MboII	GAAGA	3 cut(s)	36, 154, 157
MluCI	AATT	2 cut(s)	83, 202
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	2 cut(s)	40, 106
MspI	CCGG	1 cut(s)	198
MspR9I	CCNGG	1 cut(s)	199
NciI	CCSGG	1 cut(s)	199
NdeII	GATC	2 cut(s)	123, 243
NlaIII	CATG	1 cut(s)	243
NmuCI	GTSAC	2 cut(s)	64, 92
PfeI	GAWTC	1 cut(s)	218
PflMI	CCANNNNNTGG	1 cut(s)	88
PkrI	GCNGC	1 cut(s)	227
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
PspEI	GGTNACC	1 cut(s)	92
PspFI	CCCAGC	2 cut(s)	56, 171
RsaI	GTAC	1 cut(s)	265
RsaNI	GTAC	1 cut(s)	264
SalI	GTCGAC	1 cut(s)	104
SatI	GCNGC	1 cut(s)	226
Sau3AI	GATC	2 cut(s)	123, 243
SchI	GAGTC	1 cut(s)	44
ScrFI	CCNGG	1 cut(s)	199
SetI	ASST	4 cut(s)	51, 62, 166, 265
SfaNI	GCATC	1 cut(s)	87
Sse9I	AATT	2 cut(s)	83, 202
SsiI	CCGC	1 cut(s)	225
StyD4I	CCNGG	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	70
TaqI	TCGA	3 cut(s)	105, 216, 221
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	2 cut(s)	83, 202
TauI	GCSGC	1 cut(s)	228
TfiI	GAWTC	1 cut(s)	218
TscAI	CASTG	1 cut(s)	73
TseFI	GTSAC	2 cut(s)	64, 92
Tsp45I	GTSAC	2 cut(s)	64, 92
TspGWI	ACGGA	1 cut(s)	52
TspRI	CASTG	1 cut(s)	73
Van91I	CCANNNNNTGG	1 cut(s)	88
XapI	RAATTY	1 cut(s)	202
XmiI	GTMKAC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.