Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4D

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Reverse (-)

33179248 .. 33181016

Gene Structure 1769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4DG166900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 933 bp

ATGGAAGACGACTTTGATTTCCCAACCGGCGCCAACCCCGAAGACGTTGACATGGACCTCCCGGAGGAAGACGACGACGCGACCAGCCCAGGCCCGCTCAAGGTCGGCGAAGAGAAGGAGATTGGGAAAAATGGGCTGAAGAAGAAGCTGCTCAAGCAAGGTGAAGGGTGGGAGACGCCTGGCTCCGGCGACGAGGTTGAAGTTCATTACACTGGGACTTTGCTTGATGGCACCAAGTTTGATTCCAGCCGTGATCGGGAGACGCCTTTCAAGTTCAGCCTTGGACAAGGACAAGTGATCAAGGGATGGGATGAGGGTATTAAGACCATGAAGAAGGGTGAGAATGCAATTTTCACCATACCACCCGAGTTGGCTTATGGCGAGTCTGGATCCCCTCCAACTATTCCTCCCAATGCCACACTCCAGTTTGATGTGGAGTTGCTTTCCTGGACTAGTGTCAAGGACATATGCAAGGATGGCGGAGTTATAAAGAAAATTCTTACTGAAGGGGAGAAATGGGAGAATCCAAAAGACCTCGATGAAGTATTTGTTAAGTATGAGGCTCGACTTGAAGATGGGACTCTTGTTTCAAAATCTGATGGGGTGGAGTTTACTGTTGAAGATGGCTATTTCTGCCCAGCCTTGGCAAAAGCTGTGAAAACAATGAAGAAAAATGAAAAGGTCCATTTGATCGTAAAACCACAATATGGATTTGGTGAGGCCGGAAGACCAGCTGCTGGTGAAGAAGGTGCAGTGCCTCCAAATGCTACCCTTGGGATAACCCTAGAGTTGGTCTCGTGGAAGACAGTTTCAGATGTTACAAAGGACAAGAAGGTCCTAAAAAAGGCCTTAAAGGAGGGAGAGGGATATGAGCGTCCTAATGATGGGGCGGTAGTTCAAGGTAAATTGAGGAAGAATATATTAAAACTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_8

Protein Analysis

310

Amino Acids

33.92

Weight (kDa)

4.84

Isoelectric Point (pI)

24.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	57 - 148	1.5e-38	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	173 - 264	3.8e-17	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	488
AasI	GACNNNNNNGTC	1 cut(s)	833
AccB1I	GGYRCC	2 cut(s)	29, 230
AccB7I	CCANNNNNTGG	2 cut(s)	707, 737
AccBSI	CCGCTC	1 cut(s)	97
AccII	CGCG	1 cut(s)	80
AciI	CCGC	3 cut(s)	95, 480, 890
AclWI	GGATC	2 cut(s)	384, 397
AcsI	RAATTY	1 cut(s)	495
AcuI	CTGAAG	2 cut(s)	158, 525
AcyI	GRCGYC	3 cut(s)	30, 176, 263
AgsI	TTSAA	6 cut(s)	200, 271, 572, 591, 620, 899
AhlI	ACTAGT	1 cut(s)	452
AjnI	CCWGG	3 cut(s)	88, 178, 446
AluBI	AGCT	3 cut(s)	148, 653, 734
AluI	AGCT	3 cut(s)	148, 653, 734
Alw26I	GTCTC	3 cut(s)	167, 254, 799
AlwI	GGATC	2 cut(s)	384, 397
AlwNI	CAGNNNCTG	1 cut(s)	737
Ama87I	CYCGRG	1 cut(s)	365
AoxI	GGCC	3 cut(s)	91, 720, 846
ApeKI	GCWGC	2 cut(s)	148, 734
ApoI	RAATTY	1 cut(s)	495
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	4 cut(s)	55, 92, 682, 835
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	5 cut(s)	173, 346, 350, 728, 752
AvaI	CYCGRG	1 cut(s)	365
AvaII	GGWCC	3 cut(s)	55, 682, 835
BamHI	GGATCC	1 cut(s)	389
BanI	GGYRCC	2 cut(s)	29, 230
BauI	CACGAG	1 cut(s)	796
BbsI	GAAGAC	5 cut(s)	12, 48, 75, 733, 809
BbvI	GCAGC	2 cut(s)	135, 721
BccI	CCATC	7 cut(s)	221, 300, 470, 569, 593, 617, 878
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	3 cut(s)	90, 180, 448
BclI	TGATCA	1 cut(s)	297
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	3 cut(s)	167, 254, 799
BcuI	ACTAGT	1 cut(s)	452
BfaI	CTAG	2 cut(s)	453, 785
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	2 cut(s)	149, 735
BlsI	GCNGC	2 cut(s)	150, 736
Bme1390I	CCNGG	4 cut(s)	62, 90, 180, 448
Bme18I	GGWCC	3 cut(s)	55, 682, 835
BmeT110I	CYCGRG	1 cut(s)	365
BmgT120I	GGNCC	4 cut(s)	55, 92, 682, 835
BmiI	GGNNCC	4 cut(s)	31, 184, 232, 391
BmrFI	CCNGG	4 cut(s)	62, 90, 180, 448
BmrI	ACTGGG	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	222
BoxI	GACNNNNGTC	1 cut(s)	455
BpiI	GAAGAC	5 cut(s)	12, 48, 75, 733, 809
BplI	GAGNNNNNCTC	2 cut(s)	779, 811
BpmI	CTGGAG	1 cut(s)	407
BpuEI	CTTGAG	2 cut(s)	83, 137
BpuMI	CCSGG	1 cut(s)	62
BsaHI	GRCGYC	3 cut(s)	30, 176, 263
BsaI	GGTCTC	1 cut(s)	799
BsaJI	CCNNGG	4 cut(s)	88, 280, 642, 772
BsaXI	ACNNNNNCTCC	2 cut(s)	391, 421
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	2 cut(s)	217, 424
BseBI	CCWGG	3 cut(s)	90, 180, 448
BseDI	CCNNGG	4 cut(s)	88, 280, 642, 772
BseGI	GGATG	3 cut(s)	311, 316, 481
BseNI	ACTGG	2 cut(s)	217, 424
BseXI	GCAGC	2 cut(s)	135, 721
BseYI	CCCAGC	1 cut(s)	637
BsgI	GTGCAG	1 cut(s)	771
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	3 cut(s)	93, 722, 848
BshNI	GGYRCC	2 cut(s)	29, 230
BsiHKCI	CYCGRG	1 cut(s)	365
BsiSI	CCGG	4 cut(s)	27, 62, 186, 723
BslFI	GGGAC	2 cut(s)	229, 592
BsmAI	GTCTC	3 cut(s)	167, 254, 799
BsmBI	CGTCTC	2 cut(s)	167, 254
BsmFI	GGGAC	2 cut(s)	229, 592
BsmI	GAATGC	1 cut(s)	349
BsnI	GGCC	3 cut(s)	93, 722, 848
Bso31I	GGTCTC	1 cut(s)	799
BsoBI	CYCGRG	1 cut(s)	365
Bsp143I	GATC	4 cut(s)	253, 297, 389, 690
BspACI	CCGC	3 cut(s)	95, 480, 890
BspANI	GGCC	3 cut(s)	93, 722, 848
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	4 cut(s)	31, 184, 232, 391
BspPI	GGATC	2 cut(s)	384, 397
BspT107I	GGYRCC	2 cut(s)	29, 230
BspTNI	GGTCTC	1 cut(s)	799
BsrBI	CCGCTC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	2 cut(s)	217, 424
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	4 cut(s)	88, 280, 642, 772
BssMI	GATC	4 cut(s)	253, 297, 389, 690
BssNI	GRCGYC	3 cut(s)	30, 176, 263
BssSI	CACGAG	1 cut(s)	796
BssT1I	CCWWGG	3 cut(s)	280, 642, 772
Bst2BI	CACGAG	1 cut(s)	796
Bst2UI	CCWGG	3 cut(s)	90, 180, 448
Bst4CI	ACNGT	2 cut(s)	616, 808
Bst6I	CTCTTC	1 cut(s)	105
BstACI	GRCGYC	3 cut(s)	30, 176, 263
BstC8I	GCNNGC	1 cut(s)	95
BstENI	CCTNNNNNAGG	2 cut(s)	62, 842
BstF5I	GGATG	3 cut(s)	311, 316, 481
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	4 cut(s)	256, 300, 392, 693
BstMAI	GTCTC	3 cut(s)	167, 254, 799
BstMBI	GATC	4 cut(s)	253, 297, 389, 690
BstMWI	GCNNNNNNNGC	3 cut(s)	154, 477, 633
BstNI	CCWGG	3 cut(s)	90, 180, 448
BstPAI	GACNNNNGTC	1 cut(s)	455
BstSCI	CCNGG	4 cut(s)	60, 88, 178, 446
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	2 cut(s)	135, 721
BstV2I	GAAGAC	5 cut(s)	12, 48, 75, 733, 809
BstX2I	RGATCY	1 cut(s)	389
BstYI	RGATCY	1 cut(s)	389
BsuRI	GGCC	3 cut(s)	93, 722, 848
BtsCI	GGATG	3 cut(s)	311, 316, 481
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	2 cut(s)	210, 759
Cac8I	GCNNGC	1 cut(s)	95
CaiI	CAGNNNCTG	1 cut(s)	737
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	4 cut(s)	55, 92, 682, 835
CseI	GACGC	4 cut(s)	86, 184, 271, 863
CspCI	CAANNNNNGTGG	2 cut(s)	351, 386
CviAII	CATG	2 cut(s)	52, 328
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	4 cut(s)	255, 299, 391, 692
DpnII	GATC	4 cut(s)	253, 297, 389, 690
DrdI	GACNNNNNNGTC	1 cut(s)	833
DseDI	GACNNNNNNGTC	1 cut(s)	833
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
EciI	GGCGGA	1 cut(s)	495
Eco130I	CCWWGG	3 cut(s)	280, 642, 772
Eco147I	AGGCCT	1 cut(s)	848
Eco31I	GGTCTC	1 cut(s)	799
Eco47I	GGWCC	3 cut(s)	55, 682, 835
Eco57I	CTGAAG	2 cut(s)	158, 525
Eco88I	CYCGRG	1 cut(s)	365
EcoNI	CCTNNNNNAGG	2 cut(s)	62, 842
EcoO109I	RGGNCCY	1 cut(s)	835
EcoRII	CCWGG	3 cut(s)	88, 178, 446
EcoT14I	CCWWGG	3 cut(s)	280, 642, 772
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	3 cut(s)	280, 642, 772
Esp3I	CGTCTC	2 cut(s)	167, 254
FaeI	CATG	2 cut(s)	55, 331
FaqI	GGGAC	2 cut(s)	229, 592
FatI	CATG	2 cut(s)	51, 327
FauI	CCCGC	1 cut(s)	102
FauNDI	CATATG	1 cut(s)	467
FbaI	TGATCA	1 cut(s)	297
Fnu4HI	GCNGC	2 cut(s)	149, 735
FokI	GGATG	3 cut(s)	318, 323, 488
Fsp4HI	GCNGC	2 cut(s)	149, 735
FspBI	CTAG	2 cut(s)	453, 785
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	2 cut(s)	149, 735
GsaI	CCCAGC	1 cut(s)	641
GsuI	CTGGAG	1 cut(s)	407
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	3 cut(s)	93, 722, 848
HapII	CCGG	4 cut(s)	27, 62, 186, 723
HgaI	GACGC	4 cut(s)	86, 184, 271, 863
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	3 cut(s)	30, 176, 263
Hin1II	CATG	2 cut(s)	55, 331
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	4 cut(s)	242, 383, 523, 580
HpaII	CCGG	4 cut(s)	27, 62, 186, 723
HphI	GGTGA	5 cut(s)	173, 346, 350, 728, 752
Hpy166II	GTNNAC	2 cut(s)	49, 612
Hpy188I	TCNGA	2 cut(s)	598, 814
Hpy188III	TCNNGA	2 cut(s)	257, 387
Hpy8I	GTNNAC	2 cut(s)	49, 612
Hpy99I	CGWCG	3 cut(s)	77, 80, 194
HpyAV	CCTTC	6 cut(s)	109, 158, 328, 500, 740, 826
HpyCH4III	ACNGT	2 cut(s)	616, 808
HpyCH4IV	ACGT	1 cut(s)	45
HpyCH4V	TGCA	3 cut(s)	347, 471, 752
HpyF10VI	GCNNNNNNNGC	3 cut(s)	154, 477, 633
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	3 cut(s)	30, 176, 263
Hsp92II	CATG	2 cut(s)	55, 331
HspAI	GCGC	1 cut(s)	30
KasI	GGCGCC	1 cut(s)	29
Ksp22I	TGATCA	1 cut(s)	297
Kzo9I	GATC	4 cut(s)	253, 297, 389, 690
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	2 cut(s)	135, 721
MaeI	CTAG	2 cut(s)	453, 785
MaeII	ACGT	1 cut(s)	45
MaeIII	GTNAC	1 cut(s)	817
MalI	GATC	4 cut(s)	255, 299, 391, 692
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	4 cut(s)	253, 297, 389, 690
MflI	RGATCY	1 cut(s)	389
MluCI	AATT	3 cut(s)	348, 495, 905
Mly113I	GGCGCC	1 cut(s)	30
MlyI	GAGTC	2 cut(s)	392, 574
MmeI	TCCRAC	1 cut(s)	422
MseI	TTAA	4 cut(s)	321, 552, 851, 923
MspA1I	CMGCKG	1 cut(s)	734
MspI	CCGG	4 cut(s)	27, 62, 186, 723
MspR9I	CCNGG	4 cut(s)	62, 90, 180, 448
Mva1269I	GAATGC	1 cut(s)	349
MvaI	CCWGG	3 cut(s)	90, 180, 448
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	3 cut(s)	154, 477, 633
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	62
NdeI	CATATG	1 cut(s)	467
NdeII	GATC	4 cut(s)	253, 297, 389, 690
NlaIII	CATG	2 cut(s)	55, 331
NlaIV	GGNNCC	4 cut(s)	31, 184, 232, 391
PceI	AGGCCT	1 cut(s)	848
PctI	GAATGC	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	242, 523
PflMI	CCANNNNNTGG	2 cut(s)	707, 737
PfoI	TCCNGGA	2 cut(s)	60, 446
PkrI	GCNGC	2 cut(s)	150, 736
PleI	GAGTC	2 cut(s)	391, 574
PluTI	GGCGCC	1 cut(s)	33
PpsI	GAGTC	2 cut(s)	391, 574
PpuMI	RGGWCCY	1 cut(s)	835
PshAI	GACNNNNGTC	1 cut(s)	455
PsiI	TTATAA	1 cut(s)	488
Psp5II	RGGWCCY	1 cut(s)	835
Psp6I	CCWGG	3 cut(s)	88, 178, 446
PspFI	CCCAGC	1 cut(s)	637
PspGI	CCWGG	3 cut(s)	88, 178, 446
PspN4I	GGNNCC	4 cut(s)	31, 184, 232, 391
PspPI	GGNCC	4 cut(s)	55, 92, 682, 835
PspPPI	RGGWCCY	1 cut(s)	835
PstNI	CAGNNNCTG	1 cut(s)	737
PsuI	RGATCY	1 cut(s)	389
PvuII	CAGCTG	1 cut(s)	734
SaqAI	TTAA	4 cut(s)	321, 552, 851, 923
SatI	GCNGC	2 cut(s)	149, 735
Sau3AI	GATC	4 cut(s)	253, 297, 389, 690
Sau96I	GGNCC	4 cut(s)	55, 92, 682, 835
SchI	GAGTC	2 cut(s)	392, 574
ScrFI	CCNGG	4 cut(s)	62, 90, 180, 448
SfoI	GGCGCC	1 cut(s)	31
SinI	GGWCC	3 cut(s)	55, 682, 835
SmlI	CTYRAG	2 cut(s)	98, 152
SmoI	CTYRAG	2 cut(s)	98, 152
SpeI	ACTAGT	1 cut(s)	452
Sse9I	AATT	3 cut(s)	348, 495, 905
SseBI	AGGCCT	1 cut(s)	848
SsiI	CCGC	3 cut(s)	95, 480, 890
SspDI	GGCGCC	1 cut(s)	29
SspMI	CTAG	2 cut(s)	453, 785
StuI	AGGCCT	1 cut(s)	848
StyD4I	CCNGG	4 cut(s)	60, 88, 178, 446
StyI	CCWWGG	3 cut(s)	280, 642, 772
TaaI	ACNGT	2 cut(s)	616, 808
TaiI	ACGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	537, 565
TasI	AATT	3 cut(s)	348, 495, 905
TfiI	GAWTC	2 cut(s)	242, 523
Tru1I	TTAA	4 cut(s)	321, 552, 851, 923
Tru9I	TTAA	4 cut(s)	321, 552, 851, 923
TscAI	CASTG	2 cut(s)	217, 759
TseI	GCWGC	2 cut(s)	148, 734
TspDTI	ATGAA	5 cut(s)	194, 344, 555, 680, 690
TspRI	CASTG	2 cut(s)	217, 759
Van91I	CCANNNNNTGG	2 cut(s)	707, 737
VpaK11BI	GGWCC	3 cut(s)	55, 682, 835
XagI	CCTNNNNNAGG	2 cut(s)	62, 842
XapI	RAATTY	1 cut(s)	495
XspI	CTAG	2 cut(s)	453, 785

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.