Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035432.1

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 2045

Gene Structure 2045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035432.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

atgcctttggggaggaggggagggatgcaaacaatggatttgagtctatccccccaacttctgtgctgaacattgatattgaattgttgtctttcaagcctgttattgatgttaccggtgatggcaaagtattaaagaagattttgaaagaaggggagagtacatccagtgctcatgaaggtgcaactgttactgttagctatatagctaggctcgaagatggtactatatttgagaaaagaggagtagatggaatgcagcctttggaatttatcacagatgaagaacaagtgattgctggttttgaccaagcagttgctacaatgaaaatgggagaacaggcaatattgactatacatcctgattttggatttggaagtgttgaaataaggcgggacctggctgtagttccaccatcttcaaacattgtctttgaggttgaaatgctggattttatcaaggaaagggcaccatgggaattaagcaatcatgagaaaattgaggcagcgggaaggaagaaagaggaaggcaaccttctctttaagaaggggaagtatcatcgagcgggaaagaaatatgataaggctgctgattatgttagtgaagatgtaatctttggggatgatgagttaaagctagctaaaacattaagagtgtcttgctggttgaatggtgcagcctgtagcctaaaactaaatgactttcaggaagcaataaaactatgttcaaaggttctaggtgttgagttccacaatgtaaaagccttgtacagacgggcacaagcatatctggaaatttcagatttgttctcggctgaactggacatcaagaaagctctggagattgatccccagaacagggaggtcaagttgattgagaagaaactgaaacaacttcaagctgaaagcaataagagggatgctaagctctactcaaacatctttgcaaaggtgattggtgattggt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_8

Protein Analysis

321

Amino Acids

35.87

Weight (kDa)

5.32

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	468
AccBSI	CCGCTC	1 cut(s)	565
AciI	CCGC	3 cut(s)	393, 508, 565
AclWI	GGATC	1 cut(s)	841
AcsI	RAATTY	2 cut(s)	268, 794
AfaI	GTAC	3 cut(s)	162, 225, 769
AfiI	CCNNNNNNNGG	3 cut(s)	367, 857, 858
AgeI	ACCGGT	1 cut(s)	115
AgsI	TTSAA	9 cut(s)	82, 96, 147, 385, 422, 442, 669, 728, 898
AjnI	CCWGG	1 cut(s)	398
AluBI	AGCT	7 cut(s)	200, 208, 636, 640, 835, 901, 927
AluI	AGCT	7 cut(s)	200, 208, 636, 640, 835, 901, 927
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	841
ApeKI	GCWGC	4 cut(s)	258, 505, 586, 676
ApoI	RAATTY	2 cut(s)	268, 794
AsiGI	ACCGGT	1 cut(s)	115
AspS9I	GGNCC	1 cut(s)	396
AsuHPI	GGTGA	2 cut(s)	130, 963
AsuNHI	GCTAGC	1 cut(s)	636
AvaII	GGWCC	1 cut(s)	396
BaeGI	GKGCMC	2 cut(s)	471, 780
BanI	GGYRCC	1 cut(s)	468
Bbv12I	GWGCWC	1 cut(s)	174
BbvI	GCAGC	4 cut(s)	270, 517, 573, 688
BccI	CCATC	4 cut(s)	115, 214, 244, 423
BciT130I	CCWGG	1 cut(s)	400
BfaI	CTAG	3 cut(s)	209, 637, 736
BfmI	CTRYAG	2 cut(s)	404, 681
BisI	GCNGC	4 cut(s)	259, 506, 587, 677
BlpI	GCTNAGC	1 cut(s)	923
BlsI	GCNGC	4 cut(s)	260, 507, 588, 678
Bme1390I	CCNGG	1 cut(s)	400
Bme18I	GGWCC	1 cut(s)	396
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	2 cut(s)	397, 470
BmrFI	CCNGG	1 cut(s)	400
BmsI	GCATC	2 cut(s)	15, 909
BmtI	GCTAGC	1 cut(s)	640
BpmI	CTGGAG	1 cut(s)	859
Bpu1102I	GCTNAGC	1 cut(s)	923
BsaJI	CCNNGG	1 cut(s)	472
BsaWI	WCCGGW	1 cut(s)	115
BsaXI	ACNNNNNCTCC	2 cut(s)	853, 883
Bsc4I	CCNNNNNNNGG	3 cut(s)	367, 857, 858
Bse118I	RCCGGY	1 cut(s)	115
Bse1I	ACTGG	2 cut(s)	167, 824
BseBI	CCWGG	1 cut(s)	400
BseDI	CCNNGG	1 cut(s)	472
BseGI	GGATG	5 cut(s)	30, 163, 357, 627, 924
BseLI	CCNNNNNNNGG	3 cut(s)	367, 857, 858
BseNI	ACTGG	2 cut(s)	167, 824
BseRI	GAGGAG	2 cut(s)	28, 257
BseSI	GKGCMC	2 cut(s)	471, 780
BseXI	GCAGC	4 cut(s)	270, 517, 573, 688
BsgI	GTGCAG	1 cut(s)	695
BshNI	GGYRCC	1 cut(s)	468
BshTI	ACCGGT	1 cut(s)	115
BsiHKAI	GWGCWC	1 cut(s)	174
BsiSI	CCGG	1 cut(s)	116
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	3 cut(s)	367, 857, 858
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	260
Bsp1286I	GDGCHC	3 cut(s)	174, 471, 780
Bsp1407I	TGTACA	1 cut(s)	767
Bsp143I	GATC	1 cut(s)	846
Bsp1720I	GCTNAGC	1 cut(s)	923
Bsp19I	CCATGG	1 cut(s)	472
BspACI	CCGC	3 cut(s)	393, 508, 565
BspHI	TCATGA	2 cut(s)	174, 489
BspLI	GGNNCC	2 cut(s)	397, 470
BspOI	GCTAGC	1 cut(s)	640
BspPI	GGATC	1 cut(s)	841
BspT107I	GGYRCC	1 cut(s)	468
BsrBI	CCGCTC	1 cut(s)	565
BsrFI	RCCGGY	1 cut(s)	115
BsrGI	TGTACA	1 cut(s)	767
BsrI	ACTGG	2 cut(s)	167, 824
BssAI	RCCGGY	1 cut(s)	115
BssECI	CCNNGG	1 cut(s)	472
BssMI	GATC	1 cut(s)	846
BssT1I	CCWWGG	1 cut(s)	472
Bst2UI	CCWGG	1 cut(s)	400
Bst4CI	ACNGT	2 cut(s)	189, 195
BstAUI	TGTACA	1 cut(s)	767
BstC8I	GCNNGC	1 cut(s)	638
BstDEI	CTNAG	1 cut(s)	923
BstDSI	CCRYGG	1 cut(s)	472
BstF5I	GGATG	5 cut(s)	30, 163, 357, 627, 924
BstKTI	GATC	1 cut(s)	849
BstMBI	GATC	1 cut(s)	846
BstNI	CCWGG	1 cut(s)	400
BstSCI	CCNGG	1 cut(s)	398
BstSFI	CTRYAG	2 cut(s)	404, 681
BstSLI	GKGCMC	2 cut(s)	471, 780
BstV1I	GCAGC	4 cut(s)	270, 517, 573, 688
BtgI	CCRYGG	1 cut(s)	472
BtsCI	GGATG	5 cut(s)	30, 163, 357, 627, 924
BtsIMutI	CAGTG	1 cut(s)	174
Cac8I	GCNNGC	1 cut(s)	638
CciI	TCATGA	2 cut(s)	174, 489
Cfr10I	RCCGGY	1 cut(s)	115
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	3 cut(s)	161, 224, 768
CspAI	ACCGGT	1 cut(s)	115
CviAII	CATG	3 cut(s)	175, 473, 490
CviQI	GTAC	3 cut(s)	161, 224, 768
DdeI	CTNAG	1 cut(s)	923
DpnI	GATC	1 cut(s)	848
DpnII	GATC	1 cut(s)	846
Eco130I	CCWWGG	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	396
EcoO109I	RGGNCCY	1 cut(s)	396
EcoRII	CCWGG	1 cut(s)	398
EcoT14I	CCWWGG	1 cut(s)	472
ErhI	CCWWGG	1 cut(s)	472
FaeI	CATG	3 cut(s)	178, 476, 493
FalI	AAGNNNNNCTT	4 cut(s)	518, 550, 642, 674
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	3 cut(s)	174, 472, 489
FauI	CCCGC	3 cut(s)	386, 501, 558
Fnu4HI	GCNGC	4 cut(s)	259, 506, 587, 677
FokI	GGATG	5 cut(s)	37, 150, 344, 634, 931
Fsp4HI	GCNGC	4 cut(s)	259, 506, 587, 677
FspBI	CTAG	3 cut(s)	209, 637, 736
GluI	GCNGC	4 cut(s)	259, 506, 587, 677
GsuI	CTGGAG	1 cut(s)	859
HapII	CCGG	1 cut(s)	116
Hin1II	CATG	3 cut(s)	178, 476, 493
HinfI	GANTC	1 cut(s)	43
HpaII	CCGG	1 cut(s)	116
HphI	GGTGA	2 cut(s)	130, 963
Hpy188I	TCNGA	1 cut(s)	801
Hpy188III	TCNNGA	7 cut(s)	175, 361, 490, 706, 790, 828, 838
HpyAV	CCTTC	6 cut(s)	145, 172, 506, 520, 540, 544
HpyCH4III	ACNGT	2 cut(s)	189, 195
HpyCH4V	TGCA	5 cut(s)	28, 184, 258, 676, 946
HpyF3I	CTNAG	1 cut(s)	923
Hsp92II	CATG	3 cut(s)	178, 476, 493
Kzo9I	GATC	1 cut(s)	846
Lsp1109I	GCAGC	4 cut(s)	270, 517, 573, 688
LweI	GCATC	2 cut(s)	15, 909
MaeI	CTAG	3 cut(s)	209, 637, 736
MaeIII	GTNAC	2 cut(s)	111, 189
MalI	GATC	1 cut(s)	848
MbiI	CCGCTC	1 cut(s)	565
MboI	GATC	1 cut(s)	846
MboII	GAAGA	7 cut(s)	150, 229, 295, 410, 528, 616, 891
MhlI	GDGCHC	3 cut(s)	174, 471, 780
MluCI	AATT	5 cut(s)	82, 268, 478, 497, 794
MlyI	GAGTC	1 cut(s)	52
MnlI	CCTC	9 cut(s)	6, 9, 14, 235, 429, 495, 516, 855, 908
MseI	TTAA	5 cut(s)	133, 481, 542, 631, 649
MslI	CAYNNNNRTG	1 cut(s)	179
MspA1I	CMGCKG	1 cut(s)	508
MspI	CCGG	1 cut(s)	116
MspR9I	CCNGG	1 cut(s)	400
Mva1269I	GAATGC	1 cut(s)	260
MvaI	CCWGG	1 cut(s)	400
NcoI	CCATGG	1 cut(s)	472
NdeII	GATC	1 cut(s)	846
NheI	GCTAGC	1 cut(s)	636
NlaIII	CATG	3 cut(s)	178, 476, 493
NlaIV	GGNNCC	2 cut(s)	397, 470
NmeAIII	GCCGAG	1 cut(s)	790
PagI	TCATGA	2 cut(s)	174, 489
PctI	GAATGC	1 cut(s)	260
PinAI	ACCGGT	1 cut(s)	115
PkrI	GCNGC	4 cut(s)	260, 507, 588, 678
PleI	GAGTC	1 cut(s)	51
PpsI	GAGTC	1 cut(s)	51
PpuMI	RGGWCCY	1 cut(s)	396
Psp5II	RGGWCCY	1 cut(s)	396
Psp6I	CCWGG	1 cut(s)	398
PspGI	CCWGG	1 cut(s)	398
PspN4I	GGNNCC	2 cut(s)	397, 470
PspPI	GGNCC	1 cut(s)	396
PspPPI	RGGWCCY	1 cut(s)	396
RsaI	GTAC	3 cut(s)	162, 225, 769
RsaNI	GTAC	3 cut(s)	161, 224, 768
RseI	CAYNNNNRTG	1 cut(s)	179
SaqAI	TTAA	5 cut(s)	133, 481, 542, 631, 649
SatI	GCNGC	4 cut(s)	259, 506, 587, 677
Sau3AI	GATC	1 cut(s)	846
Sau96I	GGNCC	1 cut(s)	396
SchI	GAGTC	1 cut(s)	52
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	3 cut(s)	174, 471, 780
SfaNI	GCATC	2 cut(s)	15, 909
SfcI	CTRYAG	2 cut(s)	404, 681
SinI	GGWCC	1 cut(s)	396
SmiMI	CAYNNNNRTG	1 cut(s)	179
Sse9I	AATT	5 cut(s)	82, 268, 478, 497, 794
SsiI	CCGC	3 cut(s)	393, 508, 565
SspI	AATATT	1 cut(s)	347
SspMI	CTAG	3 cut(s)	209, 637, 736
StyD4I	CCNGG	1 cut(s)	398
StyI	CCWWGG	1 cut(s)	472
TaaI	ACNGT	2 cut(s)	189, 195
TaqI	TCGA	2 cut(s)	215, 561
TasI	AATT	5 cut(s)	82, 268, 478, 497, 794
TatI	WGTACW	2 cut(s)	160, 767
Tru1I	TTAA	5 cut(s)	133, 481, 542, 631, 649
Tru9I	TTAA	5 cut(s)	133, 481, 542, 631, 649
TscAI	CASTG	1 cut(s)	174
TseI	GCWGC	4 cut(s)	258, 505, 586, 676
TspDTI	ATGAA	3 cut(s)	191, 296, 340
TspRI	CASTG	1 cut(s)	174
VpaK11BI	GGWCC	1 cut(s)	396
XapI	RAATTY	2 cut(s)	268, 794
XspI	CTAG	3 cut(s)	209, 637, 736

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.