Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Reverse (-)

44431691 .. 44435288

Gene Structure 3598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG269800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1191 bp

ATGGACGACGACTTCGACATGGCAGCGCCCGGCGGCGAGATGATGGACGACTTTGACCTCCCCGACGAGGGCCCCGTTCTCAAGGTCGGCGAGGAGAAGGAGATCGGAAAGCAGGGCTTGAAGAAGAAGCTCCTCAAGGGAGGTGAAGGCTGGGAAACGCCCAAGAGCGGCGACGAGGTTGAAGTACACTACACTGGGACTTTGCTGGACGGGACTCAGTTCGATTCGAGCCGCGATCGGGGGACGCCGTTCAAGTTCACTCTCGGTCAAGGACAAGTGATTAAAGGATGGGATGAAGGTATTAAAACAATGAAGAAAGGTGAGAATGCCCTTTTCACCATTCCTCCTGATATGGCTTATGGTGCGTCTGGATCTCCCCCAACCATCCCTCCAAATGCAACGTTGCAGTTCGATGTTGAATTGCTATCGTGGACCAGTGTAAACGACATAACCAAGGATGGTGGAATTATTAAGAAGGTTTTGAAAGAGGGAGAAAAATGGGAGAACCCAAAAGACCTTGATGAAGTCATAGTTAAATTTGAGGCCCAGCTCGAAGATGAAACACTTGTAGCAAAATCTGACACCGTCGAATTCACTGTCAAAGAGGGTTACTTCTGTCCTGCATTGGCAAAGGCAGTTAAAACAATGAAGAAGAGCGAAAAAGTATTGTTGACGGTGAAACCACAATATGGATTTGGGGACAAGGGTAAGCCTGCATCTGGTGATGAGGGTGCTGTTCCTCCAAATGCAACTCTTCATATTACTCTAGAGTTGGCTGTGAAGTACATCGAGTATGATTCGGCTTTTGCTGACGAGGAGAAAAAACAGGCTAAGGTGTTGAAGGTTGCTTGCAATCTCAATGATGCTGCTTGCAAATTGAAGCTGAAAGAGTACAAACAGGCTGAAAAGCTGTGTACCAAGGTGTTGGATCTTGAGGGTAAGAATGTAAAGGCCCTGTACAGAAGAGCTCAGGCATATATCCAGCTGGCTGATTTGGATTTGGCTGAGCTTGACATCAAGAAAGCTCTTGAAATAGACCCTAACAACAGGGATGTGAAGCTGGAGTACAAAACTTTGAAGGAGAAGATGAAAGAACTCAATAAAAAGGAGGCAAAGTTCTATGGCAACATGTTTGCTAAACTGACTAAAAATTCCAATAAGGATGCTGAACCAATGAGCGTAGACAGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

396

Amino Acids

43.91

Weight (kDa)

5.17

Isoelectric Point (pI)

25.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	51 - 142	3.5e-39	FKBP-type peptidyl-prolyl cis-trans isomerase
FKBP_C	PF00254	168 - 258	1.9e-16	FKBP-type peptidyl-prolyl cis-trans isomerase
TPR_19	PF14559	293 - 352	4.3e-06	Tetratricopeptide repeat
TPR_1	PF00515	316 - 349	2.7e-07	Tetratricopeptide repeat
TPR_8	PF13181	317 - 349	3.2e-06	Tetratricopeptide repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	689
AccBSI	CCGCTC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	1182
AccII	CGCG	1 cut(s)	234
AciI	CCGC	3 cut(s)	33, 168, 232
AclI	AACGTT	1 cut(s)	401
AclWI	GGATC	2 cut(s)	379, 936
AcsI	RAATTY	3 cut(s)	536, 590, 1150
AcyI	GRCGYC	1 cut(s)	245
AfaI	GTAC	6 cut(s)	186, 785, 893, 916, 959, 1067
AfiI	CCNNNNNNNGG	6 cut(s)	67, 68, 167, 238, 689, 719
AflIII	ACRYGT	1 cut(s)	1128
AgsI	TTSAA	9 cut(s)	121, 182, 253, 419, 484, 841, 880, 1031, 1078
AloI	GAACNNNNNNTCC	2 cut(s)	1100, 1132
Alw21I	GWGCWC	1 cut(s)	970
AlwI	GGATC	2 cut(s)	379, 936
AoxI	GGCC	3 cut(s)	70, 543, 951
ApaI	GGGCCC	1 cut(s)	74
ApeKI	GCWGC	2 cut(s)	23, 866
ApoI	RAATTY	3 cut(s)	536, 590, 1150
ArsI	GACNNNNNNTTYG	3 cut(s)	28, 582, 614
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	5 cut(s)	70, 71, 432, 544, 952
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	5 cut(s)	155, 328, 332, 688, 734
AvaII	GGWCC	1 cut(s)	432
BaeGI	GKGCMC	1 cut(s)	74
BanII	GRGCYC	2 cut(s)	74, 970
BarI	GAAGNNNNNNTAC	2 cut(s)	1049, 1081
Bbv12I	GWGCWC	1 cut(s)	970
BbvI	GCAGC	2 cut(s)	35, 853
BccI	CCATC	4 cut(s)	37, 282, 392, 452
BceAI	ACGGC	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	30
BfaI	CTAG	2 cut(s)	767, 1189
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	5 cut(s)	24, 34, 169, 232, 867
BlpI	GCTNAGC	1 cut(s)	1005
BlsI	GCNGC	5 cut(s)	25, 35, 170, 233, 868
Bme1390I	CCNGG	1 cut(s)	30
Bme18I	GGWCC	1 cut(s)	432
BmgT120I	GGNCC	5 cut(s)	70, 71, 432, 544, 952
BmiI	GGNNCC	2 cut(s)	72, 73
BmrFI	CCNGG	1 cut(s)	30
BmrI	ACTGGG	1 cut(s)	204
BmsI	GCATC	3 cut(s)	725, 853, 1153
BmuI	ACTGGG	1 cut(s)	204
BpmI	CTGGAG	1 cut(s)	1082
Bpu10I	CCTNAGC	2 cut(s)	831, 969
Bpu1102I	GCTNAGC	1 cut(s)	1005
BpuEI	CTTGAG	3 cut(s)	65, 119, 953
BpuMI	CCSGG	1 cut(s)	30
BsaHI	GRCGYC	1 cut(s)	245
BsaJI	CCNNGG	2 cut(s)	453, 918
BsaXI	ACNNNNNCTCC	6 cut(s)	328, 358, 373, 403, 1100, 1130
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 68, 167, 238, 689, 719
Bse1I	ACTGG	2 cut(s)	199, 435
BseDI	CCNNGG	2 cut(s)	453, 918
BseGI	GGATG	6 cut(s)	293, 298, 384, 463, 1057, 1168
BseLI	CCNNNNNNNGG	6 cut(s)	67, 68, 167, 238, 689, 719
BseMII	CTCAG	3 cut(s)	230, 983, 996
BseNI	ACTGG	2 cut(s)	199, 435
BseRI	GAGGAG	3 cut(s)	107, 122, 830
BseSI	GKGCMC	1 cut(s)	74
BseXI	GCAGC	2 cut(s)	35, 853
BseYI	CCCAGC	2 cut(s)	150, 546
Bsh1236I	CGCG	1 cut(s)	234
Bsh1285I	CGRYCG	1 cut(s)	238
BshFI	GGCC	3 cut(s)	72, 545, 953
BsiEI	CGRYCG	1 cut(s)	238
BsiHKAI	GWGCWC	1 cut(s)	970
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	4 cut(s)	211, 226, 256, 713
BslI	CCNNNNNNNGG	6 cut(s)	67, 68, 167, 238, 689, 719
BsmFI	GGGAC	4 cut(s)	211, 226, 256, 713
BsmI	GAATGC	1 cut(s)	331
BsnI	GGCC	3 cut(s)	72, 545, 953
Bsp120I	GGGCCC	1 cut(s)	70
Bsp1286I	GDGCHC	2 cut(s)	74, 970
Bsp1407I	TGTACA	1 cut(s)	957
Bsp143I	GATC	4 cut(s)	102, 235, 371, 928
Bsp1720I	GCTNAGC	1 cut(s)	1005
BspACI	CCGC	3 cut(s)	33, 168, 232
BspANI	GGCC	3 cut(s)	72, 545, 953
BspCNI	CTCAG	3 cut(s)	229, 982, 997
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	72, 73
BspPI	GGATC	2 cut(s)	379, 936
BspQI	GCTCTTC	2 cut(s)	647, 958
BsrBI	CCGCTC	1 cut(s)	168
BsrGI	TGTACA	1 cut(s)	957
BsrI	ACTGG	2 cut(s)	199, 435
BssECI	CCNNGG	2 cut(s)	453, 918
BssMI	GATC	4 cut(s)	102, 235, 371, 928
BssNI	GRCGYC	1 cut(s)	245
BssT1I	CCWWGG	2 cut(s)	453, 918
Bst4CI	ACNGT	3 cut(s)	586, 598, 676
Bst6I	CTCTTC	3 cut(s)	647, 759, 958
BstACI	GRCGYC	1 cut(s)	245
BstAUI	TGTACA	1 cut(s)	957
BstC8I	GCNNGC	4 cut(s)	714, 850, 871, 987
BstDEI	CTNAG	4 cut(s)	216, 831, 969, 1005
BstF5I	GGATG	6 cut(s)	293, 298, 384, 463, 1057, 1168
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	4 cut(s)	105, 238, 374, 931
BstMBI	GATC	4 cut(s)	102, 235, 371, 928
BstMCI	CGRYCG	1 cut(s)	238
BstMWI	GCNNNNNNNGC	2 cut(s)	362, 1185
BstNSI	RCATGY	1 cut(s)	1132
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	74
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	2 cut(s)	35, 853
BstX2I	RGATCY	2 cut(s)	371, 928
BstXI	CCANNNNNNTGG	1 cut(s)	925
BstYI	RGATCY	2 cut(s)	371, 928
BsuRI	GGCC	3 cut(s)	72, 545, 953
BtsCI	GGATG	6 cut(s)	293, 298, 384, 463, 1057, 1168
BtsIMutI	CAGTG	3 cut(s)	192, 442, 594
Cac8I	GCNNGC	4 cut(s)	714, 850, 871, 987
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	5 cut(s)	70, 71, 432, 544, 952
CseI	GACGC	2 cut(s)	253, 354
Csp6I	GTAC	6 cut(s)	185, 784, 892, 915, 958, 1066
CspCI	CAANNNNNGTGG	2 cut(s)	442, 477
CviAII	CATG	2 cut(s)	19, 1129
CviQI	GTAC	6 cut(s)	185, 784, 892, 915, 958, 1066
DdeI	CTNAG	4 cut(s)	216, 831, 969, 1005
DpnI	GATC	4 cut(s)	104, 237, 373, 930
DpnII	GATC	4 cut(s)	102, 235, 371, 928
Eam1104I	CTCTTC	3 cut(s)	647, 759, 958
EarI	CTCTTC	3 cut(s)	647, 759, 958
Ecl136II	GAGCTC	1 cut(s)	968
Eco130I	CCWWGG	2 cut(s)	453, 918
Eco24I	GRGCYC	2 cut(s)	74, 970
Eco47I	GGWCC	1 cut(s)	432
Eco53kI	GAGCTC	1 cut(s)	968
EcoICRI	GAGCTC	1 cut(s)	968
EcoO109I	RGGNCCY	3 cut(s)	70, 71, 952
EcoRI	GAATTC	1 cut(s)	590
EcoT14I	CCWWGG	2 cut(s)	453, 918
EcoT38I	GRGCYC	2 cut(s)	74, 970
ErhI	CCWWGG	2 cut(s)	453, 918
FaeI	CATG	2 cut(s)	22, 1132
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	4 cut(s)	211, 226, 256, 713
FatI	CATG	2 cut(s)	18, 1128
FblI	GTMKAC	1 cut(s)	1182
Fnu4HI	GCNGC	5 cut(s)	24, 34, 169, 232, 867
FokI	GGATG	6 cut(s)	300, 305, 371, 470, 1064, 1175
FriOI	GRGCYC	2 cut(s)	74, 970
Fsp4HI	GCNGC	5 cut(s)	24, 34, 169, 232, 867
FspBI	CTAG	2 cut(s)	767, 1189
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	5 cut(s)	24, 34, 169, 232, 867
GsaI	CCCAGC	2 cut(s)	154, 550
GsuI	CTGGAG	1 cut(s)	1082
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	3 cut(s)	72, 545, 953
HapII	CCGG	1 cut(s)	30
HgaI	GACGC	2 cut(s)	253, 354
HhaI	GCGC	1 cut(s)	28
Hin1I	GRCGYC	1 cut(s)	245
Hin1II	CATG	2 cut(s)	22, 1132
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	1 cut(s)	672
HindII	GTYRAC	1 cut(s)	672
HinfI	GANTC	3 cut(s)	214, 224, 797
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	5 cut(s)	155, 328, 332, 688, 734
Hpy166II	GTNNAC	7 cut(s)	187, 258, 432, 442, 672, 915, 1183
Hpy188I	TCNGA	2 cut(s)	107, 580
Hpy188III	TCNNGA	6 cut(s)	347, 369, 767, 932, 1018, 1028
Hpy8I	GTNNAC	7 cut(s)	187, 258, 432, 442, 672, 915, 1183
Hpy99I	CGWCG	4 cut(s)	11, 68, 176, 590
HpyAV	CCTTC	6 cut(s)	91, 140, 290, 469, 835, 1072
HpyCH4III	ACNGT	3 cut(s)	586, 598, 676
HpyCH4IV	ACGT	1 cut(s)	401
HpyCH4V	TGCA	7 cut(s)	398, 406, 623, 716, 749, 852, 873
HpyF10VI	GCNNNNNNNGC	2 cut(s)	362, 1185
HpyF3I	CTNAG	4 cut(s)	216, 831, 969, 1005
HpySE526I	ACGT	1 cut(s)	401
Hsp92I	GRCGYC	1 cut(s)	245
Hsp92II	CATG	2 cut(s)	22, 1132
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	4 cut(s)	102, 235, 371, 928
LguI	GCTCTTC	2 cut(s)	647, 958
LmnI	GCTCC	1 cut(s)	135
Lsp1109I	GCAGC	2 cut(s)	35, 853
LweI	GCATC	3 cut(s)	725, 853, 1153
MaeI	CTAG	2 cut(s)	767, 1189
MaeII	ACGT	1 cut(s)	401
MaeIII	GTNAC	1 cut(s)	608
MalI	GATC	4 cut(s)	104, 237, 373, 930
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	4 cut(s)	102, 235, 371, 928
MboII	GAAGA	9 cut(s)	133, 136, 325, 566, 661, 664, 746, 975, 1096
MflI	RGATCY	2 cut(s)	371, 928
MhlI	GDGCHC	2 cut(s)	74, 970
MluCI	AATT	6 cut(s)	419, 465, 536, 590, 875, 1150
MlyI	GAGTC	1 cut(s)	208
MmeI	TCCRAC	1 cut(s)	906
MseI	TTAA	5 cut(s)	282, 303, 471, 534, 639
MspA1I	CMGCKG	1 cut(s)	985
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	30
Mva1269I	GAATGC	1 cut(s)	331
MvnI	CGCG	1 cut(s)	234
MwoI	GCNNNNNNNGC	2 cut(s)	362, 1185
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	4 cut(s)	102, 235, 371, 928
NlaIII	CATG	2 cut(s)	22, 1132
NlaIV	GGNNCC	2 cut(s)	72, 73
NspI	RCATGY	1 cut(s)	1132
PciI	ACATGT	1 cut(s)	1128
PciSI	GCTCTTC	2 cut(s)	647, 958
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 72
PctI	GAATGC	1 cut(s)	331
PfeI	GAWTC	2 cut(s)	224, 797
PflFI	GACNNNGTC	1 cut(s)	584
PflMI	CCANNNNNTGG	1 cut(s)	689
PkrI	GCNGC	5 cut(s)	25, 35, 170, 233, 868
Ple19I	CGATCG	1 cut(s)	238
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PscI	ACATGT	1 cut(s)	1128
Psp124BI	GAGCTC	1 cut(s)	970
Psp1406I	AACGTT	1 cut(s)	401
PspFI	CCCAGC	2 cut(s)	150, 546
PspN4I	GGNNCC	2 cut(s)	72, 73
PspOMI	GGGCCC	1 cut(s)	70
PspPI	GGNCC	5 cut(s)	70, 71, 432, 544, 952
PsuI	RGATCY	2 cut(s)	371, 928
PsyI	GACNNNGTC	1 cut(s)	584
PvuI	CGATCG	1 cut(s)	238
PvuII	CAGCTG	1 cut(s)	985
RsaI	GTAC	6 cut(s)	186, 785, 893, 916, 959, 1067
RsaNI	GTAC	6 cut(s)	185, 784, 892, 915, 958, 1066
SacI	GAGCTC	1 cut(s)	970
SapI	GCTCTTC	2 cut(s)	647, 958
SaqAI	TTAA	5 cut(s)	282, 303, 471, 534, 639
SatI	GCNGC	5 cut(s)	24, 34, 169, 232, 867
Sau3AI	GATC	4 cut(s)	102, 235, 371, 928
Sau96I	GGNCC	5 cut(s)	70, 71, 432, 544, 952
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	2 cut(s)	74, 970
SfaNI	GCATC	3 cut(s)	725, 853, 1153
SinI	GGWCC	1 cut(s)	432
SmlI	CTYRAG	3 cut(s)	80, 134, 932
SmoI	CTYRAG	3 cut(s)	80, 134, 932
Sse9I	AATT	6 cut(s)	419, 465, 536, 590, 875, 1150
SsiI	CCGC	3 cut(s)	33, 168, 232
SspMI	CTAG	2 cut(s)	767, 1189
SstI	GAGCTC	1 cut(s)	970
StyD4I	CCNGG	1 cut(s)	28
StyI	CCWWGG	2 cut(s)	453, 918
TaaI	ACNGT	3 cut(s)	586, 598, 676
TaiI	ACGT	1 cut(s)	404
TaqI	TCGA	7 cut(s)	15, 222, 227, 411, 552, 588, 789
TaqII	GACCGA	1 cut(s)	254
TasI	AATT	6 cut(s)	419, 465, 536, 590, 875, 1150
TatI	WGTACW	5 cut(s)	184, 783, 891, 957, 1065
TauI	GCSGC	3 cut(s)	36, 171, 234
TfiI	GAWTC	2 cut(s)	224, 797
Tru1I	TTAA	5 cut(s)	282, 303, 471, 534, 639
Tru9I	TTAA	5 cut(s)	282, 303, 471, 534, 639
TscAI	CASTG	3 cut(s)	199, 442, 601
TseI	GCWGC	2 cut(s)	23, 866
TspDTI	ATGAA	7 cut(s)	309, 326, 537, 573, 662, 746, 1103
TspRI	CASTG	3 cut(s)	199, 442, 601
Tth111I	GACNNNGTC	1 cut(s)	584
Van91I	CCANNNNNTGG	1 cut(s)	689
VpaK11BI	GGWCC	1 cut(s)	432
XapI	RAATTY	3 cut(s)	536, 590, 1150
XbaI	TCTAGA	1 cut(s)	766
XceI	RCATGY	1 cut(s)	1132
XmiI	GTMKAC	1 cut(s)	1182
XspI	CTAG	2 cut(s)	767, 1189

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.