Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021683.1

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1016

Gene Structure 1016 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021683.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 247 bp

atgcatattccagtggcaagcttcagaaactgtgatcttgtaaagcttatcagaaagcagggcctgatgaagaaacttctcaaggaaggtgaaagctgggaaacgccaaagagcgacgacgaggttgaaggtgcggtgccgatttcaacactgctttcgaatttgttacattacaccgggacttcgctggatgggactgagttcgattcgagccgtgatacgccattcaggttcactcttggtcaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

82

Amino Acids

9.2

Weight (kDa)

5.58

Isoelectric Point (pI)

42.52

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	136
AciI	CCGC	1 cut(s)	134
AcsI	RAATTY	1 cut(s)	160
AcuI	CTGAAG	1 cut(s)	7
AgsI	TTSAA	2 cut(s)	128, 147
AluBI	AGCT	3 cut(s)	21, 46, 96
AluI	AGCT	3 cut(s)	21, 46, 96
AlwNI	CAGNNNCTG	2 cut(s)	30, 64
AoxI	GGCC	1 cut(s)	61
ApoI	RAATTY	1 cut(s)	160
AspS9I	GGNCC	1 cut(s)	61
AsuC2I	CCSGG	1 cut(s)	178
AsuHPI	GGTGA	1 cut(s)	101
AsuII	TTCGAA	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	136
BccI	CCATC	1 cut(s)	185
BceAI	ACGGC	1 cut(s)	198
BcnI	CCSGG	1 cut(s)	178
Bme1390I	CCNGG	1 cut(s)	178
BmgT120I	GGNCC	1 cut(s)	61
BmiI	GGNNCC	1 cut(s)	138
BmrFI	CCNGG	1 cut(s)	178
Bpu14I	TTCGAA	1 cut(s)	158
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	178
Bse1I	ACTGG	1 cut(s)	11
BseGI	GGATG	1 cut(s)	196
BseMII	CTCAG	1 cut(s)	189
BseNI	ACTGG	1 cut(s)	11
BseYI	CCCAGC	1 cut(s)	96
BshFI	GGCC	1 cut(s)	63
BshNI	GGYRCC	1 cut(s)	136
BsiSI	CCGG	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	193, 208
BsmFI	GGGAC	2 cut(s)	193, 208
BsnI	GGCC	1 cut(s)	63
Bsp119I	TTCGAA	1 cut(s)	158
Bsp143I	GATC	1 cut(s)	34
BspACI	CCGC	1 cut(s)	134
BspANI	GGCC	1 cut(s)	63
BspCNI	CTCAG	1 cut(s)	190
BspLI	GGNNCC	1 cut(s)	138
BspT104I	TTCGAA	1 cut(s)	158
BspT107I	GGYRCC	1 cut(s)	136
BsrI	ACTGG	1 cut(s)	11
BssMI	GATC	1 cut(s)	34
Bst4CI	ACNGT	1 cut(s)	32
BstBI	TTCGAA	1 cut(s)	158
BstC8I	GCNNGC	1 cut(s)	19
BstDEI	CTNAG	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	196
BstKTI	GATC	1 cut(s)	37
BstMBI	GATC	1 cut(s)	34
BstSCI	CCNGG	1 cut(s)	176
BsuRI	GGCC	1 cut(s)	63
BtsCI	GGATG	1 cut(s)	196
BtsI	GCAGTG	1 cut(s)	149
BtsIMutI	CAGTG	2 cut(s)	18, 149
Cac8I	GCNNGC	1 cut(s)	19
CaiI	CAGNNNCTG	2 cut(s)	30, 64
Cfr13I	GGNCC	1 cut(s)	61
CviJI	RGCY	5 cut(s)	21, 46, 63, 96, 213
CviKI_1	RGCY	5 cut(s)	21, 46, 63, 96, 213
DdeI	CTNAG	1 cut(s)	198
DpnI	GATC	1 cut(s)	36
DpnII	GATC	1 cut(s)	34
Eco57I	CTGAAG	1 cut(s)	7
EcoO109I	RGGNCCY	1 cut(s)	61
EcoT22I	ATGCAT	1 cut(s)	6
FaiI	YATR	1 cut(s)	6
FaqI	GGGAC	2 cut(s)	193, 208
FokI	GGATG	1 cut(s)	203
GsaI	CCCAGC	1 cut(s)	100
HaeIII	GGCC	1 cut(s)	63
HapII	CCGG	1 cut(s)	177
HindIII	AAGCTT	2 cut(s)	19, 44
HinfI	GANTC	1 cut(s)	206
HpaII	CCGG	1 cut(s)	177
HphI	GGTGA	1 cut(s)	101
Hpy166II	GTNNAC	1 cut(s)	234
Hpy188I	TCNGA	2 cut(s)	26, 53
Hpy8I	GTNNAC	1 cut(s)	234
Hpy99I	CGWCG	2 cut(s)	119, 122
HpyAV	CCTTC	2 cut(s)	80, 122
HpyCH4III	ACNGT	1 cut(s)	32
HpyCH4V	TGCA	1 cut(s)	4
HpyF3I	CTNAG	1 cut(s)	198
Kzo9I	GATC	1 cut(s)	34
LpnPI	CCDG	7 cut(s)	24, 44, 77, 82, 173, 190, 214
MaeIII	GTNAC	1 cut(s)	165
MalI	GATC	1 cut(s)	36
MboI	GATC	1 cut(s)	34
MboII	GAAGA	1 cut(s)	82
MluCI	AATT	1 cut(s)	160
MnlI	CCTC	1 cut(s)	115
Mph1103I	ATGCAT	1 cut(s)	6
MspI	CCGG	1 cut(s)	177
MspR9I	CCNGG	1 cut(s)	178
NciI	CCSGG	1 cut(s)	178
NdeII	GATC	1 cut(s)	34
NlaIV	GGNNCC	1 cut(s)	138
NsiI	ATGCAT	1 cut(s)	6
NspV	TTCGAA	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	206
PspFI	CCCAGC	1 cut(s)	96
PspN4I	GGNNCC	1 cut(s)	138
PspPI	GGNCC	1 cut(s)	61
PstNI	CAGNNNCTG	2 cut(s)	30, 64
Sau3AI	GATC	1 cut(s)	34
Sau96I	GGNCC	1 cut(s)	61
ScrFI	CCNGG	1 cut(s)	178
SetI	ASST	7 cut(s)	23, 48, 91, 98, 126, 133, 233
SfuI	TTCGAA	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	160
SsiI	CCGC	1 cut(s)	134
StyD4I	CCNGG	1 cut(s)	176
TaaI	ACNGT	1 cut(s)	32
TaqI	TCGA	3 cut(s)	158, 204, 209
TasI	AATT	1 cut(s)	160
TfiI	GAWTC	1 cut(s)	206
TscAI	CASTG	2 cut(s)	18, 156
TspDTI	ATGAA	1 cut(s)	83
TspRI	CASTG	2 cut(s)	18, 156
XapI	RAATTY	1 cut(s)	160
Zsp2I	ATGCAT	1 cut(s)	6

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.