Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Forward (+)

60332556 .. 60333923

Gene Structure 1368 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00210070.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGACGAAGACTTTGACATGGCAACGCCCGGCGACGAGATGATGGATGACTTTGACCTCCCCGACGAGGGCCCCATTCTCAAGGTCGGTGAGGAGAATGAGATCGAAAGGTGGCTTGAAGAAGAGGAAGGTGAAGGTCGCGAAACGCACAAGAGCAACGACAAGCCCCTCTTGTCAGAGAATGAATATGAGGAGCTAGCTCTTCTCTTTTCAGTGGTTGTTGTGAACCATTCATGGAAAAGAGACTTTTACTATGAATTGAAAGTTAAAATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

91

Amino Acids

10.76

Weight (kDa)

4.12

Isoelectric Point (pI)

51.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	141
AfiI	CCNNNNNNNGG	2 cut(s)	67, 68
AgsI	TTSAA	2 cut(s)	119, 262
AluBI	AGCT	2 cut(s)	196, 200
AluI	AGCT	2 cut(s)	196, 200
Alw26I	GTCTC	1 cut(s)	237
AoxI	GGCC	1 cut(s)	70
ApaI	GGGCCC	1 cut(s)	74
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AspS9I	GGNCC	2 cut(s)	70, 71
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	2 cut(s)	101, 143
AsuNHI	GCTAGC	1 cut(s)	196
BaeGI	GKGCMC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	15
BccI	CCATC	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	30
BcoDI	GTCTC	1 cut(s)	237
BfaI	CTAG	1 cut(s)	197
Bme1390I	CCNGG	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	70, 71
BmiI	GGNNCC	2 cut(s)	72, 73
BmrFI	CCNGG	1 cut(s)	30
BmtI	GCTAGC	1 cut(s)	200
BpiI	GAAGAC	1 cut(s)	15
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	2 cut(s)	67, 68
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	67, 68
BseRI	GAGGAG	2 cut(s)	107, 206
BseSI	GKGCMC	1 cut(s)	74
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	30
BslI	CCNNNNNNNGG	2 cut(s)	67, 68
BsmAI	GTCTC	1 cut(s)	237
BsnI	GGCC	1 cut(s)	72
Bsp120I	GGGCCC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	102
Bsp68I	TCGCGA	1 cut(s)	141
BspANI	GGCC	1 cut(s)	72
BspFNI	CGCG	1 cut(s)	141
BspLI	GGNNCC	2 cut(s)	72, 73
BspOI	GCTAGC	1 cut(s)	200
BspQI	GCTCTTC	1 cut(s)	207
BssMI	GATC	1 cut(s)	102
Bst6I	CTCTTC	2 cut(s)	117, 207
BstC8I	GCNNGC	1 cut(s)	198
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	1 cut(s)	105
BstMAI	GTCTC	1 cut(s)	237
BstMBI	GATC	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	74
BstUI	CGCG	1 cut(s)	141
BstV2I	GAAGAC	1 cut(s)	15
BsuRI	GGCC	1 cut(s)	72
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	219
BtuMI	TCGCGA	1 cut(s)	141
Cac8I	GCNNGC	1 cut(s)	198
Cfr13I	GGNCC	2 cut(s)	70, 71
CviAII	CATG	2 cut(s)	19, 234
CviJI	RGCY	5 cut(s)	72, 115, 166, 196, 200
CviKI_1	RGCY	5 cut(s)	72, 115, 166, 196, 200
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eam1104I	CTCTTC	2 cut(s)	117, 207
EarI	CTCTTC	2 cut(s)	117, 207
Eco24I	GRGCYC	1 cut(s)	74
EcoO109I	RGGNCCY	2 cut(s)	70, 71
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	2 cut(s)	22, 237
FaiI	YATR	5 cut(s)	20, 189, 235, 255, 274
FalI	AAGNNNNNCTT	2 cut(s)	155, 187
FatI	CATG	2 cut(s)	18, 233
FokI	GGATG	1 cut(s)	59
FriOI	GRGCYC	1 cut(s)	74
FspBI	CTAG	1 cut(s)	197
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	30
Hin1II	CATG	2 cut(s)	22, 237
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	2 cut(s)	101, 143
Hpy166II	GTNNAC	1 cut(s)	226
Hpy188I	TCNGA	1 cut(s)	178
Hpy188III	TCNNGA	1 cut(s)	140
Hpy8I	GTNNAC	1 cut(s)	226
Hpy99I	CGWCG	2 cut(s)	38, 68
HpyAV	CCTTC	2 cut(s)	122, 128
Hsp92II	CATG	2 cut(s)	22, 237
Kzo9I	GATC	1 cut(s)	102
LguI	GCTCTTC	1 cut(s)	207
LmnI	GCTCC	1 cut(s)	193
LpnPI	CCDG	1 cut(s)	43
MaeI	CTAG	1 cut(s)	197
MalI	GATC	1 cut(s)	104
MboI	GATC	1 cut(s)	102
MboII	GAAGA	4 cut(s)	20, 131, 134, 194
MhlI	GDGCHC	1 cut(s)	74
MluCI	AATT	1 cut(s)	257
MnlI	CCTC	6 cut(s)	61, 68, 85, 118, 179, 184
MseI	TTAA	1 cut(s)	267
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	141
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	1 cut(s)	102
NheI	GCTAGC	1 cut(s)	196
NlaIII	CATG	2 cut(s)	22, 237
NlaIV	GGNNCC	2 cut(s)	72, 73
NruI	TCGCGA	1 cut(s)	141
PciSI	GCTCTTC	1 cut(s)	207
PspN4I	GGNNCC	2 cut(s)	72, 73
PspOMI	GGGCCC	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	70, 71
RruI	TCGCGA	1 cut(s)	141
SapI	GCTCTTC	1 cut(s)	207
SaqAI	TTAA	1 cut(s)	267
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	2 cut(s)	70, 71
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	7 cut(s)	60, 87, 113, 133, 139, 198, 202
SmlI	CTYRAG	1 cut(s)	80
SmoI	CTYRAG	1 cut(s)	80
Sse9I	AATT	1 cut(s)	257
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	1 cut(s)	28
TaqI	TCGA	1 cut(s)	105
TasI	AATT	1 cut(s)	257
Tru1I	TTAA	1 cut(s)	267
Tru9I	TTAA	1 cut(s)	267
TscAI	CASTG	1 cut(s)	219
TspDTI	ATGAA	3 cut(s)	198, 222, 270
TspRI	CASTG	1 cut(s)	219
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.