Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Forward (+)

43538947 .. 43540506

Gene Structure 1560 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00116390.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGGAAAACAAAGTGGGGGAGAGAAGAAAAGGAGAGTCGGTCTCAGAGGTCTCCCCCAGCTCTGTCATTGTTGGACGCATACAATTTCTGGGGCACCAAGCCGTCGACGGGGAGGAGAACGAGATCGGAAAGCAGGGATTGAAGAAGAAACTCCTAAAGGAAGGTGAAGGCTGGGATATACCCCGAAGTATATCCCAAAATGATGTGCTATTGAGTTACACTTTCCATAATGATAGTCTTCTTTATCATTCAAGGTTCAGTACTGCTGGTAATTTGGTATTACAGGAAAAGAGGCTAGAAGAGGAAGATGCAGAAGCACTGTTAAATATGGAGCTCACTGAAGGGGCTGATCATGCTAAAATGGCTAGAAACTTACGCAACAAGCTTTATGAGGTTGATATGCATTTGGAAGAGACTAAGAGATATGGTTGTTCAAAAATGCAGGTTGTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009891 GO:0009893 GO:0010029 GO:0010030 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0048580 GO:0048582 GO:0050789 GO:0050793 GO:0050794 GO:0051094 GO:0051171 GO:0051173 GO:0051239 GO:0051240 GO:0051252 GO:0051254 GO:0060255 GO:0065007 GO:0080090 GO:1900140 GO:1902680 GO:1903506 GO:1903508 GO:2000026 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BET Bromodomain

Protein Analysis

150

Amino Acids

17.03

Weight (kDa)

5.59

Isoelectric Point (pI)

53.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	433
AccB1I	GGYRCC	1 cut(s)	93
AccI	GTMKAC	1 cut(s)	105
AcuI	CTGAAG	1 cut(s)	360
AfaI	GTAC	1 cut(s)	262
AfiI	CCNNNNNNNGG	1 cut(s)	108
AgsI	TTSAA	3 cut(s)	142, 252, 435
AluBI	AGCT	3 cut(s)	60, 334, 385
AluI	AGCT	3 cut(s)	60, 334, 385
Alw21I	GWGCWC	1 cut(s)	336
Alw26I	GTCTC	3 cut(s)	46, 55, 407
AsuHPI	GGTGA	1 cut(s)	176
BaeGI	GKGCMC	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	93
BanII	GRGCYC	1 cut(s)	336
BbsI	GAAGAC	1 cut(s)	230
Bbv12I	GWGCWC	1 cut(s)	336
BceAI	ACGGC	1 cut(s)	86
BclI	TGATCA	1 cut(s)	349
BcoDI	GTCTC	3 cut(s)	46, 55, 407
BfaI	CTAG	2 cut(s)	296, 366
BfuAI	ACCTGC	1 cut(s)	433
BmcAI	AGTACT	1 cut(s)	262
BmiI	GGNNCC	1 cut(s)	95
BmsI	GCATC	1 cut(s)	298
BpiI	GAAGAC	1 cut(s)	230
BplI	GAGNNNNNCTC	2 cut(s)	26, 58
BsaI	GGTCTC	2 cut(s)	46, 55
BsaXI	ACNNNNNCTCC	2 cut(s)	24, 54
Bsc4I	CCNNNNNNNGG	1 cut(s)	108
BseLI	CCNNNNNNNGG	1 cut(s)	108
BseMII	CTCAG	1 cut(s)	57
BseRI	GAGGAG	1 cut(s)	128
BseSI	GKGCMC	1 cut(s)	96
BseYI	CCCAGC	2 cut(s)	56, 171
BshNI	GGYRCC	1 cut(s)	93
BsiHKAI	GWGCWC	1 cut(s)	336
BslI	CCNNNNNNNGG	1 cut(s)	108
BsmAI	GTCTC	3 cut(s)	46, 55, 407
Bso31I	GGTCTC	2 cut(s)	46, 55
Bsp1286I	GDGCHC	2 cut(s)	96, 336
Bsp143I	GATC	2 cut(s)	123, 349
BspCNI	CTCAG	1 cut(s)	56
BspLI	GGNNCC	1 cut(s)	95
BspMI	ACCTGC	1 cut(s)	433
BspT107I	GGYRCC	1 cut(s)	93
BspTNI	GGTCTC	2 cut(s)	46, 55
BssMI	GATC	2 cut(s)	123, 349
Bst4CI	ACNGT	1 cut(s)	321
Bst6I	CTCTTC	2 cut(s)	294, 405
BstDEI	CTNAG	2 cut(s)	43, 417
BstKTI	GATC	2 cut(s)	126, 352
BstMAI	GTCTC	3 cut(s)	46, 55, 407
BstMBI	GATC	2 cut(s)	123, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	353, 362
BstSLI	GKGCMC	1 cut(s)	96
BstV2I	GAAGAC	1 cut(s)	230
BtsIMutI	CAGTG	2 cut(s)	317, 336
BveI	ACCTGC	1 cut(s)	433
CseI	GACGC	1 cut(s)	84
Csp6I	GTAC	1 cut(s)	261
CviAII	CATG	1 cut(s)	353
CviJI	RGCY	8 cut(s)	60, 101, 171, 295, 334, 347, 365, 385
CviKI_1	RGCY	8 cut(s)	60, 101, 171, 295, 334, 347, 365, 385
CviQI	GTAC	1 cut(s)	261
DdeI	CTNAG	2 cut(s)	43, 417
DpnI	GATC	2 cut(s)	125, 351
DpnII	GATC	2 cut(s)	123, 349
Eam1104I	CTCTTC	2 cut(s)	294, 405
EarI	CTCTTC	2 cut(s)	294, 405
Ecl136II	GAGCTC	1 cut(s)	334
Eco24I	GRGCYC	1 cut(s)	336
Eco31I	GGTCTC	2 cut(s)	46, 55
Eco53kI	GAGCTC	1 cut(s)	334
Eco57I	CTGAAG	1 cut(s)	360
EcoICRI	GAGCTC	1 cut(s)	334
EcoT22I	ATGCAT	1 cut(s)	405
EcoT38I	GRGCYC	1 cut(s)	336
FaeI	CATG	1 cut(s)	356
FaiI	YATR	9 cut(s)	80, 179, 191, 228, 329, 354, 390, 401, 426
FatI	CATG	1 cut(s)	352
FbaI	TGATCA	1 cut(s)	349
FblI	GTMKAC	1 cut(s)	105
FriOI	GRGCYC	1 cut(s)	336
FspBI	CTAG	2 cut(s)	296, 366
GsaI	CCCAGC	2 cut(s)	60, 175
HgaI	GACGC	1 cut(s)	84
Hin1II	CATG	1 cut(s)	356
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	383
HinfI	GANTC	1 cut(s)	35
HphI	GGTGA	1 cut(s)	176
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	46, 128
Hpy8I	GTNNAC	1 cut(s)	106
Hpy99I	CGWCG	2 cut(s)	107, 110
HpyAV	CCTTC	3 cut(s)	155, 161, 335
HpyCH4III	ACNGT	1 cut(s)	321
HpyCH4V	TGCA	3 cut(s)	311, 403, 442
HpyF10VI	GCNNNNNNNGC	2 cut(s)	353, 362
HpyF3I	CTNAG	2 cut(s)	43, 417
Hsp92II	CATG	1 cut(s)	356
Ksp22I	TGATCA	1 cut(s)	349
Kzo9I	GATC	2 cut(s)	123, 349
LmnI	GCTCC	1 cut(s)	331
LpnPI	CCDG	7 cut(s)	70, 74, 119, 157, 252, 269, 428
LweI	GCATC	1 cut(s)	298
MaeI	CTAG	2 cut(s)	296, 366
MaeIII	GTNAC	1 cut(s)	215
MalI	GATC	2 cut(s)	125, 351
MboI	GATC	2 cut(s)	123, 349
MboII	GAAGA	7 cut(s)	36, 154, 157, 230, 311, 317, 422
MhlI	GDGCHC	2 cut(s)	96, 336
MluCI	AATT	2 cut(s)	83, 271
MlyI	GAGTC	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	52
MnlI	CCTC	5 cut(s)	40, 106, 285, 295, 385
Mph1103I	ATGCAT	1 cut(s)	405
MseI	TTAA	1 cut(s)	323
MwoI	GCNNNNNNNGC	2 cut(s)	353, 362
NdeII	GATC	2 cut(s)	123, 349
NlaIII	CATG	1 cut(s)	356
NlaIV	GGNNCC	1 cut(s)	95
NsiI	ATGCAT	1 cut(s)	405
PleI	GAGTC	1 cut(s)	43
PpsI	GAGTC	1 cut(s)	43
Psp124BI	GAGCTC	1 cut(s)	336
PspFI	CCCAGC	2 cut(s)	56, 171
PspN4I	GGNNCC	1 cut(s)	95
RsaI	GTAC	1 cut(s)	262
RsaNI	GTAC	1 cut(s)	261
SacI	GAGCTC	1 cut(s)	336
SalI	GTCGAC	1 cut(s)	104
SaqAI	TTAA	1 cut(s)	323
Sau3AI	GATC	2 cut(s)	123, 349
ScaI	AGTACT	1 cut(s)	262
SchI	GAGTC	1 cut(s)	44
SduI	GDGCHC	2 cut(s)	96, 336
SetI	ASST	8 cut(s)	51, 62, 166, 257, 336, 387, 396, 447
SfaNI	GCATC	1 cut(s)	298
SgrDI	CGTCGACG	1 cut(s)	104
Sse9I	AATT	2 cut(s)	83, 271
SspMI	CTAG	2 cut(s)	296, 366
SstI	GAGCTC	1 cut(s)	336
TaaI	ACNGT	1 cut(s)	321
TaqI	TCGA	1 cut(s)	105
TaqII	GACCGA	1 cut(s)	28
TasI	AATT	2 cut(s)	83, 271
TatI	WGTACW	1 cut(s)	260
Tru1I	TTAA	1 cut(s)	323
Tru9I	TTAA	1 cut(s)	323
TscAI	CASTG	2 cut(s)	324, 343
TspRI	CASTG	2 cut(s)	324, 343
XmiI	GTMKAC	1 cut(s)	105
XspI	CTAG	2 cut(s)	296, 366
ZrmI	AGTACT	1 cut(s)	262
Zsp2I	ATGCAT	1 cut(s)	405

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.