Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Reverse (-)

34738654 .. 34739777

Gene Structure 1124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000033960

Sequence Viewer

CDS Protein Promoter (2k)

Length: 306 bp

ATGATCGAATCGGCACTACCTCTCAAAGTCAGTGAGGAGAGAGAATTCGCCACCTATAACTTGAAGAAGAAGCTCCTCAAGTCCGGAACCGGTTGGGAAACCGCGGAGTTCGGCGATGAAGCCACCTTGCACTATGTTGGAGCTTTGCTTGATGGAACGAACTTCGAGTTTACCAGAGAGATGGAGGAGCCGGTCACTGTTAAGATTGGTGAGGGTGGAGTAGTGAAGGGGTTGGAGCATGGCATTTTCACTATGAAGAGGGGAGAATTATACTCATTCGGAAGGGTGTCATTGTGCTTGCATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_8

Protein Analysis

102

Amino Acids

11.27

Weight (kDa)

5.37

Isoelectric Point (pI)

22.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
FKBP_C	PF00254	32 - 90	1.9e-12	FKBP-type peptidyl-prolyl cis-trans isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	104
AccIII	TCCGGA	1 cut(s)	83
AciI	CCGC	2 cut(s)	102, 104
AcsI	RAATTY	1 cut(s)	44
AgeI	ACCGGT	1 cut(s)	89
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	2 cut(s)	73, 143
AluI	AGCT	2 cut(s)	73, 143
Aor13HI	TCCGGA	1 cut(s)	83
ApoI	RAATTY	1 cut(s)	44
AsiGI	ACCGGT	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	221
BccI	CCATC	2 cut(s)	146, 175
BmiI	GGNNCC	2 cut(s)	88, 189
BpuEI	CTTGAG	1 cut(s)	62
BsaJI	CCNNGG	1 cut(s)	102
BsaWI	WCCGGW	2 cut(s)	83, 89
Bse118I	RCCGGY	2 cut(s)	89, 190
BseAI	TCCGGA	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	102
BseRI	GAGGAG	3 cut(s)	50, 65, 200
Bsh1236I	CGCG	1 cut(s)	104
BshTI	ACCGGT	1 cut(s)	89
BsiSI	CCGG	3 cut(s)	84, 90, 191
Bsp13I	TCCGGA	1 cut(s)	83
Bsp143I	GATC	1 cut(s)	3
BspACI	CCGC	2 cut(s)	102, 104
BspEI	TCCGGA	1 cut(s)	83
BspFNI	CGCG	1 cut(s)	104
BspLI	GGNNCC	2 cut(s)	88, 189
BsrFI	RCCGGY	2 cut(s)	89, 190
BssAI	RCCGGY	2 cut(s)	89, 190
BssECI	CCNNGG	1 cut(s)	102
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	1 cut(s)	199
Bst6I	CTCTTC	1 cut(s)	251
BstC8I	GCNNGC	1 cut(s)	299
BstDSI	CCRYGG	1 cut(s)	102
BstFNI	CGCG	1 cut(s)	104
BstKTI	GATC	1 cut(s)	6
BstMBI	GATC	1 cut(s)	3
BstUI	CGCG	1 cut(s)	104
BstXI	CCANNNNNNTGG	1 cut(s)	181
BtgI	CCRYGG	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	129
BtsIMutI	CAGTG	2 cut(s)	37, 195
Cac8I	GCNNGC	1 cut(s)	299
Cfr10I	RCCGGY	2 cut(s)	89, 190
Cfr42I	CCGCGG	1 cut(s)	105
CspAI	ACCGGT	1 cut(s)	89
CviAII	CATG	1 cut(s)	239
CviJI	RGCY	4 cut(s)	73, 122, 143, 190
CviKI_1	RGCY	4 cut(s)	73, 122, 143, 190
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	251
EarI	CTCTTC	1 cut(s)	251
EcoRI	GAATTC	1 cut(s)	44
FaeI	CATG	1 cut(s)	242
FaiI	YATR	5 cut(s)	57, 135, 240, 254, 271
FatI	CATG	1 cut(s)	238
HapII	CCGG	3 cut(s)	84, 90, 191
Hin1II	CATG	1 cut(s)	242
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	3 cut(s)	84, 90, 191
HphI	GGTGA	1 cut(s)	221
Hpy166II	GTNNAC	1 cut(s)	171
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	1 cut(s)	84
Hpy8I	GTNNAC	1 cut(s)	171
HpyAV	CCTTC	2 cut(s)	220, 276
HpyCH4III	ACNGT	1 cut(s)	199
HpyCH4V	TGCA	2 cut(s)	130, 301
Hsp92II	CATG	1 cut(s)	242
Kpn2I	TCCGGA	1 cut(s)	83
KspI	CCGCGG	1 cut(s)	105
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	4 cut(s)	78, 140, 187, 235
LpnPI	CCDG	4 cut(s)	97, 103, 187, 204
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	3 cut(s)	76, 79, 268
MluCI	AATT	2 cut(s)	44, 266
MmeI	TCCRAC	2 cut(s)	118, 213
MnlI	CCTC	6 cut(s)	28, 30, 86, 178, 205, 252
MroI	TCCGGA	1 cut(s)	83
MseI	TTAA	2 cut(s)	201, 304
MspA1I	CMGCKG	1 cut(s)	104
MspI	CCGG	3 cut(s)	84, 90, 191
MvnI	CGCG	1 cut(s)	104
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	242
NlaIV	GGNNCC	2 cut(s)	88, 189
NmuCI	GTSAC	1 cut(s)	193
PfeI	GAWTC	1 cut(s)	8
PinAI	ACCGGT	1 cut(s)	89
PspN4I	GGNNCC	2 cut(s)	88, 189
SacII	CCGCGG	1 cut(s)	105
SaqAI	TTAA	2 cut(s)	201, 304
Sau3AI	GATC	1 cut(s)	3
SetI	ASST	5 cut(s)	22, 56, 75, 128, 145
Sfr303I	CCGCGG	1 cut(s)	105
SgrBI	CCGCGG	1 cut(s)	105
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	44, 266
SsiI	CCGC	2 cut(s)	102, 104
TaaI	ACNGT	1 cut(s)	199
TaqI	TCGA	2 cut(s)	6, 165
TasI	AATT	2 cut(s)	44, 266
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	2 cut(s)	201, 304
Tru9I	TTAA	2 cut(s)	201, 304
TscAI	CASTG	2 cut(s)	37, 202
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	132, 269
TspRI	CASTG	2 cut(s)	37, 202
XapI	RAATTY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.