Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8350909.1

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Forward (+)

380 .. 765

Gene Structure 386 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8350909.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

atggaagacgactttgatttcccaaccggcgccaaccccgaagacgttgacatggacctcccggaggaagacgacgacgcgaccagcccaggcccgctcaaggtcggcgaagagaaggagattgggaaaaatgggctgaagaagaagctgctcaagcaaggtgaagggtgggagacgcctggctccggcgacgaggttgaagttcattacactgggactttgcttgatggcaccaagtttgattccagccgtgatcgggagacgcctttcaagttcggccttggacaaggtcagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_8

Protein Analysis

98

Amino Acids

10.72

Weight (kDa)

4.22

Isoelectric Point (pI)

34.9

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	29, 230
AccBSI	CCGCTC	1 cut(s)	97
AccII	CGCG	1 cut(s)	80
AciI	CCGC	1 cut(s)	95
AcuI	CTGAAG	1 cut(s)	158
AcyI	GRCGYC	3 cut(s)	30, 176, 263
AfiI	CCNNNNNNNGG	4 cut(s)	64, 100, 185, 256
AgsI	TTSAA	2 cut(s)	200, 271
AjnI	CCWGG	2 cut(s)	88, 178
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	2 cut(s)	167, 254
AoxI	GGCC	2 cut(s)	91, 277
ApeKI	GCWGC	1 cut(s)	148
AspLEI	GCGC	1 cut(s)	32
AspS9I	GGNCC	2 cut(s)	55, 92
AsuC2I	CCSGG	1 cut(s)	62
AsuHPI	GGTGA	1 cut(s)	173
AvaII	GGWCC	1 cut(s)	55
BanI	GGYRCC	2 cut(s)	29, 230
BbsI	GAAGAC	3 cut(s)	12, 48, 75
BbvI	GCAGC	1 cut(s)	135
BccI	CCATC	1 cut(s)	221
BceAI	ACGGC	1 cut(s)	234
BciT130I	CCWGG	2 cut(s)	90, 180
BcnI	CCSGG	1 cut(s)	62
BcoDI	GTCTC	2 cut(s)	167, 254
BfoI	RGCGCY	1 cut(s)	33
BisI	GCNGC	1 cut(s)	149
BlsI	GCNGC	1 cut(s)	150
Bme1390I	CCNGG	3 cut(s)	62, 90, 180
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	2 cut(s)	55, 92
BmiI	GGNNCC	3 cut(s)	31, 184, 232
BmrFI	CCNGG	3 cut(s)	62, 90, 180
BmrI	ACTGGG	1 cut(s)	222
BmuI	ACTGGG	1 cut(s)	222
BpiI	GAAGAC	3 cut(s)	12, 48, 75
BpuEI	CTTGAG	2 cut(s)	83, 137
BpuMI	CCSGG	1 cut(s)	62
BsaHI	GRCGYC	3 cut(s)	30, 176, 263
BsaJI	CCNNGG	2 cut(s)	88, 280
Bsc4I	CCNNNNNNNGG	4 cut(s)	64, 100, 185, 256
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	217
BseBI	CCWGG	2 cut(s)	90, 180
BseDI	CCNNGG	2 cut(s)	88, 280
BseLI	CCNNNNNNNGG	4 cut(s)	64, 100, 185, 256
BseNI	ACTGG	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	135
Bsh1236I	CGCG	1 cut(s)	80
BshFI	GGCC	2 cut(s)	93, 279
BshNI	GGYRCC	2 cut(s)	29, 230
BsiSI	CCGG	3 cut(s)	27, 62, 186
BslFI	GGGAC	1 cut(s)	229
BslI	CCNNNNNNNGG	4 cut(s)	64, 100, 185, 256
BsmAI	GTCTC	2 cut(s)	167, 254
BsmBI	CGTCTC	2 cut(s)	167, 254
BsmFI	GGGAC	1 cut(s)	229
BsnI	GGCC	2 cut(s)	93, 279
Bsp143I	GATC	1 cut(s)	253
BspACI	CCGC	1 cut(s)	95
BspANI	GGCC	2 cut(s)	93, 279
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	3 cut(s)	31, 184, 232
BspT107I	GGYRCC	2 cut(s)	29, 230
BsrBI	CCGCTC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	217
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	2 cut(s)	88, 280
BssMI	GATC	1 cut(s)	253
BssNI	GRCGYC	3 cut(s)	30, 176, 263
BssT1I	CCWWGG	1 cut(s)	280
Bst2UI	CCWGG	2 cut(s)	90, 180
Bst6I	CTCTTC	1 cut(s)	105
BstACI	GRCGYC	3 cut(s)	30, 176, 263
BstC8I	GCNNGC	1 cut(s)	95
BstENI	CCTNNNNNAGG	1 cut(s)	62
BstFNI	CGCG	1 cut(s)	80
BstH2I	RGCGCY	1 cut(s)	33
BstHHI	GCGC	1 cut(s)	32
BstKTI	GATC	1 cut(s)	256
BstMAI	GTCTC	2 cut(s)	167, 254
BstMBI	GATC	1 cut(s)	253
BstMWI	GCNNNNNNNGC	1 cut(s)	154
BstNI	CCWGG	2 cut(s)	90, 180
BstSCI	CCNGG	3 cut(s)	60, 88, 178
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	1 cut(s)	135
BstV2I	GAAGAC	3 cut(s)	12, 48, 75
BsuRI	GGCC	2 cut(s)	93, 279
BtsIMutI	CAGTG	1 cut(s)	210
Cac8I	GCNNGC	1 cut(s)	95
CfoI	GCGC	1 cut(s)	32
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	2 cut(s)	55, 92
CseI	GACGC	3 cut(s)	86, 184, 271
CviAII	CATG	1 cut(s)	52
CviJI	RGCY	7 cut(s)	87, 93, 136, 148, 183, 249, 279
CviKI_1	RGCY	7 cut(s)	87, 93, 136, 148, 183, 249, 279
DinI	GGCGCC	1 cut(s)	31
DpnI	GATC	1 cut(s)	255
DpnII	GATC	1 cut(s)	253
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	1 cut(s)	280
Eco47I	GGWCC	1 cut(s)	55
Eco57I	CTGAAG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	62
EcoRII	CCWGG	2 cut(s)	88, 178
EcoT14I	CCWWGG	1 cut(s)	280
EgeI	GGCGCC	1 cut(s)	31
EheI	GGCGCC	1 cut(s)	31
ErhI	CCWWGG	1 cut(s)	280
Esp3I	CGTCTC	2 cut(s)	167, 254
FaeI	CATG	1 cut(s)	55
FaiI	YATR	1 cut(s)	53
FaqI	GGGAC	1 cut(s)	229
FatI	CATG	1 cut(s)	51
FauI	CCCGC	1 cut(s)	102
Fnu4HI	GCNGC	1 cut(s)	149
Fsp4HI	GCNGC	1 cut(s)	149
GlaI	GCGC	1 cut(s)	31
GluI	GCNGC	1 cut(s)	149
HaeII	RGCGCY	1 cut(s)	33
HaeIII	GGCC	2 cut(s)	93, 279
HapII	CCGG	3 cut(s)	27, 62, 186
HgaI	GACGC	3 cut(s)	86, 184, 271
HhaI	GCGC	1 cut(s)	32
Hin1I	GRCGYC	3 cut(s)	30, 176, 263
Hin1II	CATG	1 cut(s)	55
Hin6I	GCGC	1 cut(s)	30
HinP1I	GCGC	1 cut(s)	30
HincII	GTYRAC	1 cut(s)	49
HindII	GTYRAC	1 cut(s)	49
HinfI	GANTC	1 cut(s)	242
HpaII	CCGG	3 cut(s)	27, 62, 186
HphI	GGTGA	1 cut(s)	173
Hpy166II	GTNNAC	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	257
Hpy8I	GTNNAC	1 cut(s)	49
Hpy99I	CGWCG	3 cut(s)	77, 80, 194
HpyAV	CCTTC	2 cut(s)	109, 158
HpyCH4IV	ACGT	1 cut(s)	45
HpyF10VI	GCNNNNNNNGC	1 cut(s)	154
HpySE526I	ACGT	1 cut(s)	45
Hsp92I	GRCGYC	3 cut(s)	30, 176, 263
Hsp92II	CATG	1 cut(s)	55
HspAI	GCGC	1 cut(s)	30
KasI	GGCGCC	1 cut(s)	29
Kzo9I	GATC	1 cut(s)	253
LmnI	GCTCC	1 cut(s)	188
Lsp1109I	GCAGC	1 cut(s)	135
MaeII	ACGT	1 cut(s)	45
MalI	GATC	1 cut(s)	255
MbiI	CCGCTC	1 cut(s)	97
MboI	GATC	1 cut(s)	253
MboII	GAAGA	6 cut(s)	17, 53, 80, 122, 151, 154
Mly113I	GGCGCC	1 cut(s)	30
MnlI	CCTC	3 cut(s)	58, 68, 187
MspI	CCGG	3 cut(s)	27, 62, 186
MspR9I	CCNGG	3 cut(s)	62, 90, 180
MvaI	CCWGG	2 cut(s)	90, 180
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	1 cut(s)	154
NarI	GGCGCC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	62
NdeII	GATC	1 cut(s)	253
NlaIII	CATG	1 cut(s)	55
NlaIV	GGNNCC	3 cut(s)	31, 184, 232
PfeI	GAWTC	1 cut(s)	242
PflFI	GACNNNGTC	1 cut(s)	288
PfoI	TCCNGGA	1 cut(s)	60
PkrI	GCNGC	1 cut(s)	150
PluTI	GGCGCC	1 cut(s)	33
Psp6I	CCWGG	2 cut(s)	88, 178
PspGI	CCWGG	2 cut(s)	88, 178
PspN4I	GGNNCC	3 cut(s)	31, 184, 232
PspPI	GGNCC	2 cut(s)	55, 92
PsyI	GACNNNGTC	1 cut(s)	288
SatI	GCNGC	1 cut(s)	149
Sau3AI	GATC	1 cut(s)	253
Sau96I	GGNCC	2 cut(s)	55, 92
ScrFI	CCNGG	3 cut(s)	62, 90, 180
SetI	ASST	7 cut(s)	48, 60, 105, 150, 163, 198, 292
SfoI	GGCGCC	1 cut(s)	31
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	2 cut(s)	98, 152
SmoI	CTYRAG	2 cut(s)	98, 152
SsiI	CCGC	1 cut(s)	95
SspDI	GGCGCC	1 cut(s)	29
StyD4I	CCNGG	3 cut(s)	60, 88, 178
StyI	CCWWGG	1 cut(s)	280
TaiI	ACGT	1 cut(s)	48
TfiI	GAWTC	1 cut(s)	242
TscAI	CASTG	1 cut(s)	217
TseI	GCWGC	1 cut(s)	148
TspDTI	ATGAA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	288
VpaK11BI	GGWCC	1 cut(s)	55
XagI	CCTNNNNNAGG	1 cut(s)	62

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.