Rorug06G0184100

Plant self-incompatibility protein S1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000654
Physical Location & Seq
Reverse (-)
29173696 .. 29176625
2930 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0184100.1

Sequence Viewer

Length: 465 bp
ATGGTTTCTCCTCCTTCCTCTACTCAAACCCTCGGCGACAGATCTGATTTCAAGCCAACCGAAGTTCTTGTAGTTAGACGAGACTTGAAGATGACAACTACAAAAATTGCATCTCAGTATGCTGCAACTAGCATGTATACAGAACTGATGCAAAGGGTTCTTATGGATGCGTATCATTTGGGTAACCTCCAACCTTCAATGAAAGATATAATTCCATGGTTTCCATGGATGGTAATGCAGAACTTCAAATATTATCATTCAAAGCCACTAAGATTAGGCTTTTACGTAGCCTATGTATTCACACTCAAACAATGCAGGTTCATTTGCAGCTACACCAAGGACTGGAAATTCAAGTTACAAGTATTTTTATCTTATAACAAACTGCTACTTTTGTTTTGTATATGGAGAAGTATAGGCCATATGTCCCCTTCTCCCTACTCTTTGTACTCTTTTTATCAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Self-incomp_S1

Protein Analysis

154

Amino Acids

18.31

Weight (kDa)

9.66

Isoelectric Point (pI)

51.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20301 FvH4_2g20310 FvH4_2g20310 FvH4_2g20700
malus_domestica MD07G1079200.v1.1 MD07G1079300.v1.1 MD07G1079400.v1.1 MD12G1024400.v1.1 MD15G1375000.v1.1 MD15G1375200.v1.1 MD15G1375500.v1.1 MD15G1376100.v1.1 MD15G1376200.v1.1 MD15G1376300.v1.1 MD17G1274300.v1.1 MD17G1275000.v1.1 MD17G1275400.v1.1 MD17G1275900.v1.1 MD17G1276000.v1.1 MD17G1276600.v1.1 MD17G1277700.v1.1
prunus_persica Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.3G009700_v2.0.a1 Prupe.3G010100_v2.0.a1 Prupe.3G010300_v2.0.a1 Prupe.3G130700_v2.0.a1 Prupe.3G130800_v2.0.a1 Prupe.3G130900_v2.0.a1
pyrus_communis pycom07g06290 pycom07g06320 pycom15g33580 pycom15g33620 pycom17g27240 pycom17g27360 pycom17g27390 pycom17g27400 pycom17g27410 pycom17g27450 pycom17g27530
rosa_chinensis RchiOBHm_Chr4g0405381 RchiOBHm_Chr6g0286441
rosa_laevigata RLG00000008845 RLG00000012572
rosa_multiflora Rmu_sc0000575.1_g000003 Rmu_sc0003585.1_g000001 Rmu_sc0027178.1_g000001 Rmu_sc0042065.1_g000001
rosa_roxburghii Rroxscaffold_4G00313580 Rroxscaffold_5G00349860 Rroxscaffold_7G00182360
rosa_rugosa Rorug01G0140300.1 Rorug01G0140400.1 Rorug04G0057900 Rorug04G0057900 Rorug04G0058000 Rorug04G0058100 Rorug04G0058200 Rorug06G0179200 Rorug06G0184100
rosa_samantha Rh4AG131500 Rh4BG126200 Rh4BG126300 Rh4CG138700 Rh4DG125600 Rh6AG292000 Rh6BG295500 Rh6BG300700 Rh6CG296200 Rh6DG288000
rosa_wichuraiana Rw1G013150 Rw1G013160 Rw4G010650 Rw6G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 375
Acc36I ACCTGC 1 cut(s) 306
AccB7I CCANNNNNTGG 1 cut(s) 342
AccI GTMKAC 1 cut(s) 137
AcsI RAATTY 1 cut(s) 347
AfaI GTAC 1 cut(s) 446
AfiI CCNNNNNNNGG 1 cut(s) 342
AgsI TTSAA 6 cut(s) 52, 88, 198, 247, 261, 352
AluBI AGCT 1 cut(s) 330
AluI AGCT 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 75
AoxI GGCC 1 cut(s) 415
ApeKI GCWGC 2 cut(s) 122, 327
ApoI RAATTY 1 cut(s) 347
BbvI GCAGC 2 cut(s) 109, 339
BccI CCATC 1 cut(s) 223
BcoDI GTCTC 1 cut(s) 75
BfaI CTAG 1 cut(s) 129
BfuAI ACCTGC 1 cut(s) 306
BglII AGATCT 1 cut(s) 41
BisI GCNGC 2 cut(s) 123, 328
BlsI GCNGC 2 cut(s) 124, 329
BmsI GCATC 3 cut(s) 119, 138, 157
BsaAI YACGTR 1 cut(s) 286
BsaBI GATNNNNATC 1 cut(s) 171
BsaJI CCNNGG 4 cut(s) 31, 215, 224, 336
Bsc4I CCNNNNNNNGG 1 cut(s) 342
Bse1I ACTGG 1 cut(s) 347
Bse8I GATNNNNATC 1 cut(s) 171
BseDI CCNNGG 4 cut(s) 31, 215, 224, 336
BseGI GGATG 2 cut(s) 172, 234
BseJI GATNNNNATC 1 cut(s) 171
BseLI CCNNNNNNNGG 1 cut(s) 342
BseMII CTCAG 1 cut(s) 128
BseNI ACTGG 1 cut(s) 347
BseXI GCAGC 2 cut(s) 109, 339
BshFI GGCC 1 cut(s) 417
BslFI GGGAC 1 cut(s) 409
BslI CCNNNNNNNGG 1 cut(s) 342
BsmAI GTCTC 1 cut(s) 75
BsmFI GGGAC 1 cut(s) 409
BsnI GGCC 1 cut(s) 417
Bsp143I GATC 1 cut(s) 41
Bsp19I CCATGG 2 cut(s) 215, 224
BspANI GGCC 1 cut(s) 417
BspCNI CTCAG 1 cut(s) 127
BspMI ACCTGC 1 cut(s) 306
BsrI ACTGG 1 cut(s) 347
BssECI CCNNGG 4 cut(s) 31, 215, 224, 336
BssMI GATC 1 cut(s) 41
BssNAI GTATAC 1 cut(s) 138
BssT1I CCWWGG 3 cut(s) 215, 224, 336
Bst1107I GTATAC 1 cut(s) 138
BstBAI YACGTR 1 cut(s) 286
BstDEI CTNAG 2 cut(s) 114, 269
BstDSI CCRYGG 2 cut(s) 215, 224
BstEII GGTNACC 1 cut(s) 182
BstF5I GGATG 2 cut(s) 172, 234
BstKTI GATC 1 cut(s) 44
BstMAI GTCTC 1 cut(s) 75
BstMBI GATC 1 cut(s) 41
BstNSI RCATGY 1 cut(s) 136
BstPI GGTNACC 1 cut(s) 182
BstSNI TACGTA 1 cut(s) 286
BstV1I GCAGC 2 cut(s) 109, 339
BstX2I RGATCY 1 cut(s) 41
BstYI RGATCY 1 cut(s) 41
BstZ17I GTATAC 1 cut(s) 138
BsuRI GGCC 1 cut(s) 417
BtgI CCRYGG 2 cut(s) 215, 224
BtsCI GGATG 2 cut(s) 172, 234
BveI ACCTGC 1 cut(s) 306
Csp6I GTAC 1 cut(s) 445
CviAII CATG 3 cut(s) 133, 216, 225
CviJI RGCY 6 cut(s) 55, 265, 279, 290, 330, 417
CviKI_1 RGCY 6 cut(s) 55, 265, 279, 290, 330, 417
CviQI GTAC 1 cut(s) 445
DdeI CTNAG 2 cut(s) 114, 269
DpnI GATC 1 cut(s) 43
DpnII GATC 1 cut(s) 41
Eco105I TACGTA 1 cut(s) 286
Eco130I CCWWGG 3 cut(s) 215, 224, 336
Eco91I GGTNACC 1 cut(s) 182
EcoO65I GGTNACC 1 cut(s) 182
EcoT14I CCWWGG 3 cut(s) 215, 224, 336
ErhI CCWWGG 3 cut(s) 215, 224, 336
FaeI CATG 3 cut(s) 136, 219, 228
FaqI GGGAC 1 cut(s) 409
FatI CATG 3 cut(s) 132, 215, 224
FauNDI CATATG 1 cut(s) 420
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 123, 328
FokI GGATG 2 cut(s) 179, 241
Fsp4HI GCNGC 2 cut(s) 123, 328
FspBI CTAG 1 cut(s) 129
GluI GCNGC 2 cut(s) 123, 328
HaeIII GGCC 1 cut(s) 417
Hin1II CATG 3 cut(s) 136, 219, 228
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 46, 459
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 3 cut(s) 24, 204, 438
HpyCH4IV ACGT 1 cut(s) 285
HpyCH4V TGCA 6 cut(s) 110, 125, 151, 238, 315, 327
HpyF3I CTNAG 2 cut(s) 114, 269
HpySE526I ACGT 1 cut(s) 285
Hsp92II CATG 3 cut(s) 136, 219, 228
Kzo9I GATC 1 cut(s) 41
LpnPI CCDG 2 cut(s) 301, 328
Lsp1109I GCAGC 2 cut(s) 109, 339
LweI GCATC 3 cut(s) 119, 138, 157
MaeI CTAG 1 cut(s) 129
MaeII ACGT 1 cut(s) 285
MaeIII GTNAC 2 cut(s) 182, 354
MalI GATC 1 cut(s) 43
MboI GATC 1 cut(s) 41
MboII GAAGA 1 cut(s) 100
MflI RGATCY 1 cut(s) 41
MluCI AATT 3 cut(s) 105, 210, 347
MmeI TCCRAC 1 cut(s) 214
MnlI CCTC 4 cut(s) 21, 28, 41, 197
NcoI CCATGG 2 cut(s) 215, 224
NdeI CATATG 1 cut(s) 420
NdeII GATC 1 cut(s) 41
NlaIII CATG 3 cut(s) 136, 219, 228
NmeAIII GCCGAG 1 cut(s) 12
NspI RCATGY 1 cut(s) 136
PflMI CCANNNNNTGG 1 cut(s) 342
PkrI GCNGC 2 cut(s) 124, 329
Ppu21I YACGTR 1 cut(s) 286
PsiI TTATAA 1 cut(s) 375
PspEI GGTNACC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 41
RsaI GTAC 1 cut(s) 446
RsaNI GTAC 1 cut(s) 445
SatI GCNGC 2 cut(s) 123, 328
Sau3AI GATC 1 cut(s) 41
SetI ASST 5 cut(s) 189, 196, 288, 320, 332
SfaNI GCATC 3 cut(s) 119, 138, 157
SnaBI TACGTA 1 cut(s) 286
Sse9I AATT 3 cut(s) 105, 210, 347
SspI AATATT 1 cut(s) 251
SspMI CTAG 1 cut(s) 129
StyI CCWWGG 3 cut(s) 215, 224, 336
TaiI ACGT 1 cut(s) 288
TasI AATT 3 cut(s) 105, 210, 347
TatI WGTACW 1 cut(s) 444
TseI GCWGC 2 cut(s) 122, 327
TspDTI ATGAA 2 cut(s) 215, 310
Van91I CCANNNNNTGG 1 cut(s) 342
XapI RAATTY 1 cut(s) 347
XceI RCATGY 1 cut(s) 136
XcmI CCANNNNNNNNNTGG 1 cut(s) 222
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 1 cut(s) 129
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.