MD15G1376200.v1.1

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0000654
Physical Location & Seq
Forward (+)
46010293 .. 46011849
1557 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1376200.v1.1.491

Sequence Viewer

Length: 264 bp
ATGCATGATTTTTGGATAAAGGAGTTCGGAATCCAGCTTGTGTACGAGCAGGAAAGACCTCCTTCTAGCCAGAATAATGTTGTTGCTGGAGATGTGTCAATGTCAGCATCAGAGTACCAAATGTGGACAGGAAAATACTTTAATCATAGGCACCGTACTCATCAAACTCAATTCCGAAAGAGACAGGAGAATCCAGCACATATTGAATTTTCGTTTGAGCCAAAGCATCAGCTTCATACTTATTCAAGGCCCAAAGACCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

88

Amino Acids

10.57

Weight (kDa)

8.14

Isoelectric Point (pI)

56.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20301 FvH4_2g20310 FvH4_2g20310 FvH4_2g20700
malus_domestica MD07G1079200.v1.1 MD07G1079300.v1.1 MD07G1079400.v1.1 MD12G1024400.v1.1 MD15G1375000.v1.1 MD15G1375200.v1.1 MD15G1375500.v1.1 MD15G1376100.v1.1 MD15G1376200.v1.1 MD15G1376300.v1.1 MD17G1274300.v1.1 MD17G1275000.v1.1 MD17G1275400.v1.1 MD17G1275900.v1.1 MD17G1276000.v1.1 MD17G1276600.v1.1 MD17G1277700.v1.1
prunus_persica Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.3G009700_v2.0.a1 Prupe.3G010100_v2.0.a1 Prupe.3G010300_v2.0.a1 Prupe.3G130700_v2.0.a1 Prupe.3G130800_v2.0.a1 Prupe.3G130900_v2.0.a1
pyrus_communis pycom07g06290 pycom07g06320 pycom15g33580 pycom15g33620 pycom17g27240 pycom17g27360 pycom17g27390 pycom17g27400 pycom17g27410 pycom17g27450 pycom17g27530
rosa_chinensis RchiOBHm_Chr4g0405381 RchiOBHm_Chr6g0286441
rosa_laevigata RLG00000008845 RLG00000012572
rosa_multiflora Rmu_sc0000575.1_g000003 Rmu_sc0003585.1_g000001 Rmu_sc0027178.1_g000001 Rmu_sc0042065.1_g000001
rosa_roxburghii Rroxscaffold_4G00313580 Rroxscaffold_5G00349860 Rroxscaffold_7G00182360
rosa_rugosa Rorug01G0140300.1 Rorug01G0140400.1 Rorug04G0057900 Rorug04G0057900 Rorug04G0058000 Rorug04G0058100 Rorug04G0058200 Rorug06G0179200 Rorug06G0184100
rosa_samantha Rh4AG131500 Rh4BG126200 Rh4BG126300 Rh4CG138700 Rh4DG125600 Rh6AG292000 Rh6BG295500 Rh6BG300700 Rh6CG296200 Rh6DG288000
rosa_wichuraiana Rw1G013150 Rw1G013160 Rw4G010650 Rw6G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 150
AcsI RAATTY 1 cut(s) 206
AfaI GTAC 3 cut(s) 44, 116, 157
AgsI TTSAA 2 cut(s) 206, 246
AluBI AGCT 2 cut(s) 37, 232
AluI AGCT 2 cut(s) 37, 232
Alw26I GTCTC 1 cut(s) 175
AoxI GGCC 1 cut(s) 248
ApoI RAATTY 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 249
BanI GGYRCC 1 cut(s) 150
BcoDI GTCTC 1 cut(s) 175
BfaI CTAG 1 cut(s) 66
BmgT120I GGNCC 1 cut(s) 249
BmiI GGNNCC 1 cut(s) 152
BmsI GCATC 2 cut(s) 116, 235
BpmI CTGGAG 1 cut(s) 108
BshFI GGCC 1 cut(s) 250
BshNI GGYRCC 1 cut(s) 150
BsmAI GTCTC 1 cut(s) 175
BsnI GGCC 1 cut(s) 250
BspANI GGCC 1 cut(s) 250
BspLI GGNNCC 1 cut(s) 152
BspT107I GGYRCC 1 cut(s) 150
Bst4CI ACNGT 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 175
BsuRI GGCC 1 cut(s) 250
Cfr13I GGNCC 1 cut(s) 249
Csp6I GTAC 3 cut(s) 43, 115, 156
CviAII CATG 1 cut(s) 5
CviJI RGCY 5 cut(s) 37, 69, 220, 232, 250
CviKI_1 RGCY 5 cut(s) 37, 69, 220, 232, 250
CviQI GTAC 3 cut(s) 43, 115, 156
EcoT22I ATGCAT 1 cut(s) 6
FaeI CATG 1 cut(s) 8
FaiI YATR 4 cut(s) 6, 147, 201, 237
FalI AAGNNNNNCTT 2 cut(s) 46, 78
FatI CATG 1 cut(s) 4
FspBI CTAG 1 cut(s) 66
GsuI CTGGAG 1 cut(s) 108
HaeIII GGCC 1 cut(s) 250
Hin1II CATG 1 cut(s) 8
HinfI GANTC 2 cut(s) 30, 190
Hpy166II GTNNAC 2 cut(s) 43, 126
Hpy188I TCNGA 3 cut(s) 29, 112, 176
Hpy8I GTNNAC 2 cut(s) 43, 126
HpyAV CCTTC 1 cut(s) 72
HpyCH4III ACNGT 1 cut(s) 155
HpyCH4V TGCA 1 cut(s) 4
Hsp92II CATG 1 cut(s) 8
LpnPI CCDG 7 cut(s) 35, 47, 72, 83, 114, 170, 207
LweI GCATC 2 cut(s) 116, 235
MaeI CTAG 1 cut(s) 66
MluCI AATT 2 cut(s) 170, 206
MnlI CCTC 1 cut(s) 69
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 1 cut(s) 141
NlaIII CATG 1 cut(s) 8
NlaIV GGNNCC 1 cut(s) 152
NsiI ATGCAT 1 cut(s) 6
PfeI GAWTC 2 cut(s) 30, 190
PspN4I GGNNCC 1 cut(s) 152
PspPI GGNCC 1 cut(s) 249
RsaI GTAC 3 cut(s) 44, 116, 157
RsaNI GTAC 3 cut(s) 43, 115, 156
SaqAI TTAA 1 cut(s) 141
Sau96I GGNCC 1 cut(s) 249
SetI ASST 3 cut(s) 39, 61, 234
SfaNI GCATC 2 cut(s) 116, 235
Sse9I AATT 2 cut(s) 170, 206
SspMI CTAG 1 cut(s) 66
TaaI ACNGT 1 cut(s) 155
TasI AATT 2 cut(s) 170, 206
TfiI GAWTC 2 cut(s) 30, 190
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TspDTI ATGAA 1 cut(s) 224
XapI RAATTY 1 cut(s) 206
XspI CTAG 1 cut(s) 66
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.