RchiOBHm_Chr6g0286441

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000654
Physical Location & Seq
Reverse (-)
49895991 .. 49896740
750 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ25692

Sequence Viewer

Length: 750 bp
ATGATCTTCATGAAACAGGGACTCTATGAATGTGGAATATTTAGCATTTTCCTTCATGGAAGCACAATTCCTGACTGCTACACCTACAGAAGCATGGGTGATTCAGTGTTGTCTATAACTGTTCCTTCCCATCTTAAGCTTAAGATCCGAGGCTTAAATGTATGTATTCTATATGCACTAGGCCCATGCCAGCACCTTAAAGTCAGTAATGACACGAAGGGTCTTATGTGGACATACTGCCCCGTCACTGTTGGTGTTCCTAAAGAGGATGGACTGATGCTATGGCTAAGTCATTGGCTGTTTGAGAACCATGAGTTGGAGGCTGGGGATGAATTACGTGTCTCGGTGCATAATGGAGCTATATTCTTTGACCCTCTTGGTCATCGAGACGTTCTTCCAGCAAAGGAATTTGGAATCCAACTTGTGTATGAATCGGAAAATAAGGACGTCCGATCCAAAAGTGAAGATATTACGGTACAACTTGAAGCGCCTTATTGGAGTTACAATATTGTTACTGGGAATGGATCATTGTCAGCATCAAAGTATCAAATGTGGACAGGCAAATACTTTCTTTGCAATTATATTTACAATATGCGTCAGATTCATTTCAGAAATTGCGAGGAGAATCCAGCTCATCTTGATTTTTCATATGAGCCCAAAGATCGTTTGAGTGGATATTGCCGTCATTTATTTGAGCACACTCACTTTCACAAGAAAAAATTTGAGTTTGTATTGAATCTCTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

249

Amino Acids

28.89

Weight (kDa)

6.49

Isoelectric Point (pI)

25.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 18 - 146 3.4e-06 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20301 FvH4_2g20310 FvH4_2g20310 FvH4_2g20700
malus_domestica MD07G1079200.v1.1 MD07G1079300.v1.1 MD07G1079400.v1.1 MD12G1024400.v1.1 MD15G1375000.v1.1 MD15G1375200.v1.1 MD15G1375500.v1.1 MD15G1376100.v1.1 MD15G1376200.v1.1 MD15G1376300.v1.1 MD17G1274300.v1.1 MD17G1275000.v1.1 MD17G1275400.v1.1 MD17G1275900.v1.1 MD17G1276000.v1.1 MD17G1276600.v1.1 MD17G1277700.v1.1
prunus_persica Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.3G009700_v2.0.a1 Prupe.3G010100_v2.0.a1 Prupe.3G010300_v2.0.a1 Prupe.3G130700_v2.0.a1 Prupe.3G130800_v2.0.a1 Prupe.3G130900_v2.0.a1
pyrus_communis pycom07g06290 pycom07g06320 pycom15g33580 pycom15g33620 pycom17g27240 pycom17g27360 pycom17g27390 pycom17g27400 pycom17g27410 pycom17g27450 pycom17g27530
rosa_chinensis RchiOBHm_Chr4g0405381 RchiOBHm_Chr6g0286441
rosa_laevigata RLG00000008845 RLG00000012572
rosa_multiflora Rmu_sc0000575.1_g000003 Rmu_sc0003585.1_g000001 Rmu_sc0027178.1_g000001 Rmu_sc0042065.1_g000001
rosa_roxburghii Rroxscaffold_4G00313580 Rroxscaffold_5G00349860 Rroxscaffold_7G00182360
rosa_rugosa Rorug01G0140300.1 Rorug01G0140400.1 Rorug04G0057900 Rorug04G0057900 Rorug04G0058000 Rorug04G0058100 Rorug04G0058200 Rorug06G0179200 Rorug06G0184100
rosa_samantha Rh4AG131500 Rh4BG126200 Rh4BG126300 Rh4CG138700 Rh4DG125600 Rh6AG292000 Rh6BG295500 Rh6BG300700 Rh6CG296200 Rh6DG288000
rosa_wichuraiana Rw1G013150 Rw1G013160 Rw4G010650 Rw6G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 450
AccB7I CCANNNNNTGG 1 cut(s) 316
AclWI GGATC 3 cut(s) 139, 447, 532
AcsI RAATTY 2 cut(s) 407, 719
AcyI GRCGYC 1 cut(s) 447
AfaI GTAC 1 cut(s) 477
AfiI CCNNNNNNNGG 1 cut(s) 316
AflII CTTAAG 2 cut(s) 134, 140
AflIII ACRYGT 1 cut(s) 337
AgsI TTSAA 2 cut(s) 485, 736
AjuI GAANNNNNNNTTGG 2 cut(s) 299, 331
AluBI AGCT 3 cut(s) 139, 359, 632
AluI AGCT 3 cut(s) 139, 359, 632
Alw21I GWGCWC 1 cut(s) 699
Alw26I GTCTC 2 cut(s) 346, 381
AlwI GGATC 3 cut(s) 139, 447, 532
AoxI GGCC 1 cut(s) 181
ApoI RAATTY 2 cut(s) 407, 719
AspLEI GCGC 1 cut(s) 490
AspS9I GGNCC 1 cut(s) 182
AsuHPI GGTGA 1 cut(s) 110
BanII GRGCYC 1 cut(s) 657
Bbv12I GWGCWC 1 cut(s) 699
BccI CCATC 2 cut(s) 138, 263
BceAI ACGGC 1 cut(s) 666
BcoDI GTCTC 2 cut(s) 346, 381
BfaI CTAG 1 cut(s) 179
BfmI CTRYAG 1 cut(s) 85
BfoI RGCGCY 1 cut(s) 491
BfrI CTTAAG 2 cut(s) 134, 140
BmgT120I GGNCC 1 cut(s) 182
BmrI ACTGGG 1 cut(s) 525
BmsI GCATC 2 cut(s) 267, 545
BmuI ACTGGG 1 cut(s) 525
BsaAI YACGTR 1 cut(s) 338
BsaHI GRCGYC 1 cut(s) 447
BsaJI CCNNGG 1 cut(s) 148
Bsc4I CCNNNNNNNGG 1 cut(s) 316
Bse1I ACTGG 1 cut(s) 520
BseDI CCNNGG 1 cut(s) 148
BseGI GGATG 2 cut(s) 274, 334
BseLI CCNNNNNNNGG 1 cut(s) 316
BseNI ACTGG 1 cut(s) 520
BseRI GAGGAG 1 cut(s) 635
BseYI CCCAGC 1 cut(s) 323
BshFI GGCC 1 cut(s) 183
BsiHKAI GWGCWC 1 cut(s) 699
BslFI GGGAC 1 cut(s) 33
BslI CCNNNNNNNGG 1 cut(s) 316
BsmAI GTCTC 2 cut(s) 346, 381
BsmBI CGTCTC 1 cut(s) 381
BsmFI GGGAC 1 cut(s) 33
BsnI GGCC 1 cut(s) 183
Bsp1286I GDGCHC 2 cut(s) 657, 699
Bsp143I GATC 5 cut(s) 3, 144, 452, 524, 661
BspANI GGCC 1 cut(s) 183
BspHI TCATGA 1 cut(s) 9
BspPI GGATC 3 cut(s) 139, 447, 532
BspTI CTTAAG 2 cut(s) 134, 140
BsrI ACTGG 1 cut(s) 520
BssECI CCNNGG 1 cut(s) 148
BssMI GATC 5 cut(s) 3, 144, 452, 524, 661
BssNI GRCGYC 1 cut(s) 447
Bst4CI ACNGT 3 cut(s) 121, 250, 475
BstACI GRCGYC 1 cut(s) 447
BstAFI CTTAAG 2 cut(s) 134, 140
BstBAI YACGTR 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 287
BstF5I GGATG 2 cut(s) 274, 334
BstH2I RGCGCY 1 cut(s) 491
BstHHI GCGC 1 cut(s) 490
BstKTI GATC 5 cut(s) 6, 147, 455, 527, 664
BstMAI GTCTC 2 cut(s) 346, 381
BstMBI GATC 5 cut(s) 3, 144, 452, 524, 661
BstSFI CTRYAG 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 144
BstYI RGATCY 1 cut(s) 144
BsuRI GGCC 1 cut(s) 183
BtsCI GGATG 2 cut(s) 274, 334
BtsIMutI CAGTG 2 cut(s) 111, 246
Cac8I GCNNGC 1 cut(s) 191
CciI TCATGA 1 cut(s) 9
CfoI GCGC 1 cut(s) 490
Cfr13I GGNCC 1 cut(s) 182
CseI GACGC 1 cut(s) 584
Csp6I GTAC 1 cut(s) 476
CviAII CATG 5 cut(s) 10, 56, 94, 186, 311
CviJI RGCY 9 cut(s) 139, 153, 183, 286, 298, 323, 359, 632, 655
CviKI_1 RGCY 9 cut(s) 139, 153, 183, 286, 298, 323, 359, 632, 655
CviQI GTAC 1 cut(s) 476
DdeI CTNAG 1 cut(s) 287
DpnI GATC 5 cut(s) 5, 146, 454, 526, 663
DpnII GATC 5 cut(s) 3, 144, 452, 524, 661
Eco24I GRGCYC 1 cut(s) 657
EcoT38I GRGCYC 1 cut(s) 657
Esp3I CGTCTC 1 cut(s) 381
FaeI CATG 5 cut(s) 13, 59, 97, 189, 314
FaqI GGGAC 1 cut(s) 33
FatI CATG 5 cut(s) 9, 55, 93, 185, 310
FauNDI CATATG 1 cut(s) 649
FokI GGATG 2 cut(s) 281, 341
FriOI GRGCYC 1 cut(s) 657
FspBI CTAG 1 cut(s) 179
GlaI GCGC 1 cut(s) 489
GsaI CCCAGC 1 cut(s) 327
HaeII RGCGCY 1 cut(s) 491
HaeIII GGCC 1 cut(s) 183
HgaI GACGC 1 cut(s) 584
HhaI GCGC 1 cut(s) 490
Hin1I GRCGYC 1 cut(s) 447
Hin1II CATG 5 cut(s) 13, 59, 97, 189, 314
Hin6I GCGC 1 cut(s) 488
HinP1I GCGC 1 cut(s) 488
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 7 cut(s) 21, 101, 414, 431, 601, 625, 736
HphI GGTGA 1 cut(s) 110
Hpy166II GTNNAC 2 cut(s) 231, 555
Hpy188I TCNGA 5 cut(s) 149, 436, 452, 600, 611
Hpy188III TCNNGA 4 cut(s) 10, 71, 386, 638
Hpy8I GTNNAC 2 cut(s) 231, 555
HpyAV CCTTC 3 cut(s) 62, 135, 211
HpyCH4III ACNGT 3 cut(s) 121, 250, 475
HpyCH4IV ACGT 3 cut(s) 337, 390, 447
HpyCH4V TGCA 3 cut(s) 176, 349, 576
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 3 cut(s) 337, 390, 447
Hsp92I GRCGYC 1 cut(s) 447
Hsp92II CATG 5 cut(s) 13, 59, 97, 189, 314
HspAI GCGC 1 cut(s) 488
Kzo9I GATC 5 cut(s) 3, 144, 452, 524, 661
LmnI GCTCC 1 cut(s) 356
LpnPI CCDG 8 cut(s) 2, 84, 203, 309, 411, 501, 543, 642
LweI GCATC 2 cut(s) 267, 545
MaeI CTAG 1 cut(s) 179
MaeII ACGT 3 cut(s) 337, 390, 447
MaeIII GTNAC 3 cut(s) 244, 500, 511
MalI GATC 5 cut(s) 5, 146, 454, 526, 663
MboI GATC 5 cut(s) 3, 144, 452, 524, 661
MboII GAAGA 2 cut(s) 386, 476
MflI RGATCY 1 cut(s) 144
MhlI GDGCHC 2 cut(s) 657, 699
MluCI AATT 6 cut(s) 66, 332, 407, 577, 613, 719
MlyI GAGTC 1 cut(s) 15
MmeI TCCRAC 2 cut(s) 297, 442
MnlI CCTC 5 cut(s) 143, 259, 313, 384, 613
MseI TTAA 4 cut(s) 135, 141, 155, 198
MspCI CTTAAG 2 cut(s) 134, 140
NdeI CATATG 1 cut(s) 649
NdeII GATC 5 cut(s) 3, 144, 452, 524, 661
NlaIII CATG 5 cut(s) 13, 59, 97, 189, 314
NmuCI GTSAC 1 cut(s) 244
PagI TCATGA 1 cut(s) 9
PfeI GAWTC 6 cut(s) 101, 414, 431, 601, 625, 736
PflMI CCANNNNNTGG 1 cut(s) 316
PleI GAGTC 1 cut(s) 15
PpsI GAGTC 1 cut(s) 15
Ppu21I YACGTR 1 cut(s) 338
PspFI CCCAGC 1 cut(s) 323
PspPI GGNCC 1 cut(s) 182
PsuI RGATCY 1 cut(s) 144
RsaI GTAC 1 cut(s) 477
RsaNI GTAC 1 cut(s) 476
SaqAI TTAA 4 cut(s) 135, 141, 155, 198
Sau3AI GATC 5 cut(s) 3, 144, 452, 524, 661
Sau96I GGNCC 1 cut(s) 182
SchI GAGTC 1 cut(s) 15
SduI GDGCHC 2 cut(s) 657, 699
SetI ASST 8 cut(s) 86, 141, 198, 340, 361, 393, 450, 634
SfaNI GCATC 2 cut(s) 267, 545
SfcI CTRYAG 1 cut(s) 85
SmlI CTYRAG 2 cut(s) 134, 140
SmoI CTYRAG 2 cut(s) 134, 140
Sse9I AATT 6 cut(s) 66, 332, 407, 577, 613, 719
SspI AATATT 2 cut(s) 39, 508
SspMI CTAG 1 cut(s) 179
TaaI ACNGT 3 cut(s) 121, 250, 475
TaiI ACGT 3 cut(s) 340, 393, 450
TaqI TCGA 1 cut(s) 385
TasI AATT 6 cut(s) 66, 332, 407, 577, 613, 719
TfiI GAWTC 6 cut(s) 101, 414, 431, 601, 625, 736
Tru1I TTAA 4 cut(s) 135, 141, 155, 198
Tru9I TTAA 4 cut(s) 135, 141, 155, 198
TscAI CASTG 2 cut(s) 111, 253
TseFI GTSAC 1 cut(s) 244
Tsp45I GTSAC 1 cut(s) 244
TspDTI ATGAA 7 cut(s) 26, 42, 44, 345, 444, 593, 636
TspRI CASTG 2 cut(s) 111, 253
Van91I CCANNNNNTGG 1 cut(s) 316
Vha464I CTTAAG 2 cut(s) 134, 140
XapI RAATTY 2 cut(s) 407, 719
XspI CTAG 1 cut(s) 179
ZraI GACGTC 1 cut(s) 448
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.