Rh6DG288000

TMV resistance protein N-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0000654
Physical Location & Seq
Reverse (-)
48638134 .. 48639075
942 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG288000.1

Sequence Viewer

Length: 777 bp
ATGAGCAATCACCTGACAGATACAAACAAGACAGGTCCACTCCAGGGACTCTATGAATGTGGAATATTTAGCATTTTCCTTCATGGAAGCACAATTCCTGACTGCTACACCTACAGAAGCATGGGTGATTCAGTGTTGTCTATAACTGTTCCTTCCCATCTTAAGCTTAAGATCCGAGGCTTAAATGTATGTATTCTATATGCACTAGGCCCATGCCAGCACCTTAAAGTCAGTAATGACACGAAGGGTCTTATGTGGACATACTGCCCCGTCACTGTTGGTGTTCCTAAAGAGGATGGACTGATGCTATGGCTAAGTCATTGGCTGTTTGAGAACCATGAGTTGGAGGCTGGGGATGAATTACGTGTCTCGGTGCATAATGGAGCTATATTCTTTGACCCTCTTGGTCATCGAGACGTTCTTCCAGCAAAGGAATTTGGAATCCAACTTGTGTATGAATCGGAAAATAAGGACGTCCGATCCAAAAGTGAAGATATTACGGTACAACTTGAAGCGCCTTATTGGAGTTACAATATTGTTACTGGGAATGGATCATTGTCAGCATCAAAGTATCAAATGTGGACAGGCAAATACTTTCTTTGCAATTATATTTACAATATGCGTCAGATTCATTTCAGAAATTGCGAGGAGAATCCAGCTCATCTTGATTTTTCATATGAGCCCAAAGATCGTTTGAGTGGATATTGCCGTCATTTATTTGAGCACACTCACTTTCACAAGAAAAAATTTGAGTTTGTATTGAATCTCTTTGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 NB-ARC TIR

Protein Analysis

258

Amino Acids

29.75

Weight (kDa)

6.38

Isoelectric Point (pI)

25.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
C-JID PF20160 27 - 155 3.8e-06 C-JID domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20301 FvH4_2g20310 FvH4_2g20310 FvH4_2g20700
malus_domestica MD07G1079200.v1.1 MD07G1079300.v1.1 MD07G1079400.v1.1 MD12G1024400.v1.1 MD15G1375000.v1.1 MD15G1375200.v1.1 MD15G1375500.v1.1 MD15G1376100.v1.1 MD15G1376200.v1.1 MD15G1376300.v1.1 MD17G1274300.v1.1 MD17G1275000.v1.1 MD17G1275400.v1.1 MD17G1275900.v1.1 MD17G1276000.v1.1 MD17G1276600.v1.1 MD17G1277700.v1.1
prunus_persica Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.3G009700_v2.0.a1 Prupe.3G010100_v2.0.a1 Prupe.3G010300_v2.0.a1 Prupe.3G130700_v2.0.a1 Prupe.3G130800_v2.0.a1 Prupe.3G130900_v2.0.a1
pyrus_communis pycom07g06290 pycom07g06320 pycom15g33580 pycom15g33620 pycom17g27240 pycom17g27360 pycom17g27390 pycom17g27400 pycom17g27410 pycom17g27450 pycom17g27530
rosa_chinensis RchiOBHm_Chr4g0405381 RchiOBHm_Chr6g0286441
rosa_laevigata RLG00000008845 RLG00000012572
rosa_multiflora Rmu_sc0000575.1_g000003 Rmu_sc0003585.1_g000001 Rmu_sc0027178.1_g000001 Rmu_sc0042065.1_g000001
rosa_roxburghii Rroxscaffold_4G00313580 Rroxscaffold_5G00349860 Rroxscaffold_7G00182360
rosa_rugosa Rorug01G0140300.1 Rorug01G0140400.1 Rorug04G0057900 Rorug04G0057900 Rorug04G0058000 Rorug04G0058100 Rorug04G0058200 Rorug06G0179200 Rorug06G0184100
rosa_samantha Rh4AG131500 Rh4BG126200 Rh4BG126300 Rh4CG138700 Rh4DG125600 Rh6AG292000 Rh6BG295500 Rh6BG300700 Rh6CG296200 Rh6DG288000
rosa_wichuraiana Rw1G013150 Rw1G013160 Rw4G010650 Rw6G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 477
AccB7I CCANNNNNTGG 1 cut(s) 343
AclWI GGATC 3 cut(s) 166, 474, 559
AcsI RAATTY 2 cut(s) 434, 746
AcyI GRCGYC 1 cut(s) 474
AfaI GTAC 1 cut(s) 504
AfiI CCNNNNNNNGG 2 cut(s) 44, 343
AflII CTTAAG 2 cut(s) 161, 167
AflIII ACRYGT 1 cut(s) 364
AgsI TTSAA 2 cut(s) 512, 763
AjnI CCWGG 1 cut(s) 42
AjuI GAANNNNNNNTTGG 2 cut(s) 326, 358
AluBI AGCT 3 cut(s) 166, 386, 659
AluI AGCT 3 cut(s) 166, 386, 659
Alw21I GWGCWC 1 cut(s) 726
Alw26I GTCTC 2 cut(s) 373, 408
AlwI GGATC 3 cut(s) 166, 474, 559
AoxI GGCC 1 cut(s) 208
ApoI RAATTY 2 cut(s) 434, 746
AspLEI GCGC 1 cut(s) 517
AspS9I GGNCC 2 cut(s) 35, 209
AsuHPI GGTGA 1 cut(s) 137
AvaII GGWCC 1 cut(s) 35
BanII GRGCYC 1 cut(s) 684
Bbv12I GWGCWC 1 cut(s) 726
BccI CCATC 2 cut(s) 165, 290
BceAI ACGGC 1 cut(s) 693
BciT130I CCWGG 1 cut(s) 44
BcoDI GTCTC 2 cut(s) 373, 408
BfaI CTAG 1 cut(s) 206
BfmI CTRYAG 1 cut(s) 112
BfoI RGCGCY 1 cut(s) 518
BfrI CTTAAG 2 cut(s) 161, 167
Bme1390I CCNGG 1 cut(s) 44
Bme18I GGWCC 1 cut(s) 35
BmgT120I GGNCC 2 cut(s) 35, 209
BmrFI CCNGG 1 cut(s) 44
BmrI ACTGGG 1 cut(s) 552
BmsI GCATC 2 cut(s) 294, 572
BmuI ACTGGG 1 cut(s) 552
BpmI CTGGAG 1 cut(s) 26
BsaAI YACGTR 1 cut(s) 365
BsaHI GRCGYC 1 cut(s) 474
BsaJI CCNNGG 2 cut(s) 43, 175
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 343
Bse1I ACTGG 1 cut(s) 547
BseBI CCWGG 1 cut(s) 44
BseDI CCNNGG 2 cut(s) 43, 175
BseGI GGATG 2 cut(s) 301, 361
BseLI CCNNNNNNNGG 2 cut(s) 44, 343
BseNI ACTGG 1 cut(s) 547
BseRI GAGGAG 1 cut(s) 662
BseYI CCCAGC 1 cut(s) 350
BshFI GGCC 1 cut(s) 210
BsiHKAI GWGCWC 1 cut(s) 726
BslFI GGGAC 1 cut(s) 60
BslI CCNNNNNNNGG 2 cut(s) 44, 343
BsmAI GTCTC 2 cut(s) 373, 408
BsmBI CGTCTC 1 cut(s) 408
BsmFI GGGAC 1 cut(s) 60
BsnI GGCC 1 cut(s) 210
Bsp1286I GDGCHC 2 cut(s) 684, 726
Bsp143I GATC 4 cut(s) 171, 479, 551, 688
BspANI GGCC 1 cut(s) 210
BspPI GGATC 3 cut(s) 166, 474, 559
BspTI CTTAAG 2 cut(s) 161, 167
BsrI ACTGG 1 cut(s) 547
BssECI CCNNGG 2 cut(s) 43, 175
BssMI GATC 4 cut(s) 171, 479, 551, 688
BssNI GRCGYC 1 cut(s) 474
Bst2UI CCWGG 1 cut(s) 44
Bst4CI ACNGT 3 cut(s) 148, 277, 502
BstACI GRCGYC 1 cut(s) 474
BstAFI CTTAAG 2 cut(s) 161, 167
BstBAI YACGTR 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 218
BstDEI CTNAG 1 cut(s) 314
BstF5I GGATG 2 cut(s) 301, 361
BstH2I RGCGCY 1 cut(s) 518
BstHHI GCGC 1 cut(s) 517
BstKTI GATC 4 cut(s) 174, 482, 554, 691
BstMAI GTCTC 2 cut(s) 373, 408
BstMBI GATC 4 cut(s) 171, 479, 551, 688
BstNI CCWGG 1 cut(s) 44
BstSCI CCNGG 1 cut(s) 42
BstSFI CTRYAG 1 cut(s) 112
BstX2I RGATCY 1 cut(s) 171
BstYI RGATCY 1 cut(s) 171
BsuRI GGCC 1 cut(s) 210
BtsCI GGATG 2 cut(s) 301, 361
BtsIMutI CAGTG 2 cut(s) 138, 273
Cac8I GCNNGC 1 cut(s) 218
CfoI GCGC 1 cut(s) 517
Cfr13I GGNCC 2 cut(s) 35, 209
CseI GACGC 1 cut(s) 611
Csp6I GTAC 1 cut(s) 503
CviAII CATG 4 cut(s) 83, 121, 213, 338
CviJI RGCY 9 cut(s) 166, 180, 210, 313, 325, 350, 386, 659, 682
CviKI_1 RGCY 9 cut(s) 166, 180, 210, 313, 325, 350, 386, 659, 682
CviQI GTAC 1 cut(s) 503
DdeI CTNAG 1 cut(s) 314
DpnI GATC 4 cut(s) 173, 481, 553, 690
DpnII GATC 4 cut(s) 171, 479, 551, 688
Eco24I GRGCYC 1 cut(s) 684
Eco47I GGWCC 1 cut(s) 35
EcoRII CCWGG 1 cut(s) 42
EcoT38I GRGCYC 1 cut(s) 684
Esp3I CGTCTC 1 cut(s) 408
FaeI CATG 4 cut(s) 86, 124, 216, 341
FaqI GGGAC 1 cut(s) 60
FatI CATG 4 cut(s) 82, 120, 212, 337
FauNDI CATATG 1 cut(s) 676
FokI GGATG 2 cut(s) 308, 368
FriOI GRGCYC 1 cut(s) 684
FspBI CTAG 1 cut(s) 206
GlaI GCGC 1 cut(s) 516
GsaI CCCAGC 1 cut(s) 354
GsuI CTGGAG 1 cut(s) 26
HaeII RGCGCY 1 cut(s) 518
HaeIII GGCC 1 cut(s) 210
HgaI GACGC 1 cut(s) 611
HhaI GCGC 1 cut(s) 517
Hin1I GRCGYC 1 cut(s) 474
Hin1II CATG 4 cut(s) 86, 124, 216, 341
Hin6I GCGC 1 cut(s) 515
HinP1I GCGC 1 cut(s) 515
HindIII AAGCTT 1 cut(s) 164
HinfI GANTC 7 cut(s) 48, 128, 441, 458, 628, 652, 763
HphI GGTGA 1 cut(s) 137
Hpy166II GTNNAC 3 cut(s) 38, 258, 582
Hpy188I TCNGA 5 cut(s) 176, 463, 479, 627, 638
Hpy188III TCNNGA 3 cut(s) 98, 413, 665
Hpy8I GTNNAC 3 cut(s) 38, 258, 582
HpyAV CCTTC 3 cut(s) 89, 162, 238
HpyCH4III ACNGT 3 cut(s) 148, 277, 502
HpyCH4IV ACGT 3 cut(s) 364, 417, 474
HpyCH4V TGCA 3 cut(s) 203, 376, 603
HpyF3I CTNAG 1 cut(s) 314
HpySE526I ACGT 3 cut(s) 364, 417, 474
Hsp92I GRCGYC 1 cut(s) 474
Hsp92II CATG 4 cut(s) 86, 124, 216, 341
HspAI GCGC 1 cut(s) 515
Kzo9I GATC 4 cut(s) 171, 479, 551, 688
LmnI GCTCC 1 cut(s) 383
LweI GCATC 2 cut(s) 294, 572
MaeI CTAG 1 cut(s) 206
MaeII ACGT 3 cut(s) 364, 417, 474
MaeIII GTNAC 3 cut(s) 271, 527, 538
MalI GATC 4 cut(s) 173, 481, 553, 690
MboI GATC 4 cut(s) 171, 479, 551, 688
MboII GAAGA 2 cut(s) 413, 503
MflI RGATCY 1 cut(s) 171
MhlI GDGCHC 2 cut(s) 684, 726
MluCI AATT 6 cut(s) 93, 359, 434, 604, 640, 746
MlyI GAGTC 1 cut(s) 42
MmeI TCCRAC 2 cut(s) 324, 469
MnlI CCTC 5 cut(s) 170, 286, 340, 411, 640
MseI TTAA 4 cut(s) 162, 168, 182, 225
MspCI CTTAAG 2 cut(s) 161, 167
MspR9I CCNGG 1 cut(s) 44
MvaI CCWGG 1 cut(s) 44
NdeI CATATG 1 cut(s) 676
NdeII GATC 4 cut(s) 171, 479, 551, 688
NlaIII CATG 4 cut(s) 86, 124, 216, 341
NmuCI GTSAC 1 cut(s) 271
PfeI GAWTC 6 cut(s) 128, 441, 458, 628, 652, 763
PflMI CCANNNNNTGG 1 cut(s) 343
PleI GAGTC 1 cut(s) 42
PpsI GAGTC 1 cut(s) 42
Ppu21I YACGTR 1 cut(s) 365
Psp6I CCWGG 1 cut(s) 42
PspFI CCCAGC 1 cut(s) 350
PspGI CCWGG 1 cut(s) 42
PspPI GGNCC 2 cut(s) 35, 209
PsuI RGATCY 1 cut(s) 171
RsaI GTAC 1 cut(s) 504
RsaNI GTAC 1 cut(s) 503
SaqAI TTAA 4 cut(s) 162, 168, 182, 225
Sau3AI GATC 4 cut(s) 171, 479, 551, 688
Sau96I GGNCC 2 cut(s) 35, 209
SchI GAGTC 1 cut(s) 42
ScrFI CCNGG 1 cut(s) 44
SduI GDGCHC 2 cut(s) 684, 726
SfaNI GCATC 2 cut(s) 294, 572
SfcI CTRYAG 1 cut(s) 112
SinI GGWCC 1 cut(s) 35
SmlI CTYRAG 2 cut(s) 161, 167
SmoI CTYRAG 2 cut(s) 161, 167
Sse9I AATT 6 cut(s) 93, 359, 434, 604, 640, 746
SspI AATATT 2 cut(s) 66, 535
SspMI CTAG 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 42
TaaI ACNGT 3 cut(s) 148, 277, 502
TaiI ACGT 3 cut(s) 367, 420, 477
TaqI TCGA 1 cut(s) 412
TasI AATT 6 cut(s) 93, 359, 434, 604, 640, 746
TfiI GAWTC 6 cut(s) 128, 441, 458, 628, 652, 763
Tru1I TTAA 4 cut(s) 162, 168, 182, 225
Tru9I TTAA 4 cut(s) 162, 168, 182, 225
TscAI CASTG 2 cut(s) 138, 280
TseFI GTSAC 1 cut(s) 271
Tsp45I GTSAC 1 cut(s) 271
TspDTI ATGAA 6 cut(s) 69, 71, 372, 471, 620, 663
TspRI CASTG 2 cut(s) 138, 280
Van91I CCANNNNNTGG 1 cut(s) 343
Vha464I CTTAAG 2 cut(s) 161, 167
VpaK11BI GGWCC 1 cut(s) 35
XapI RAATTY 2 cut(s) 434, 746
XspI CTAG 1 cut(s) 206
ZraI GACGTC 1 cut(s) 475
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.