MD07G1079300.v1.1

TMV resistance protein N-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
Physical Location & Seq
Forward (+)
7635921 .. 7639092
3172 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1079300.v1.1.491

Sequence Viewer

Length: 2547 bp
ATGGCTGCTGCTATAACCCTTATGCGGCTGCATGATGGTTCTTCATGCTTTTACCGGTGTAGCTATCATGCATTCTTGAGTTTCAGAGGTGAAGATACCCGCAAGGGATTTTCCGATCACCTCTACCGAGCTTTGGAGCTGGCAGGAATCCACACCTTTAGAGATGATGAAATTGAGAGAGGAGAGAATATTGCAGCAGAGTTGCACAGAGCAATAAACGAGTCAAAAGTATCAATAATCGTCTTCTCCGAGAACTATGCAACCTCTAGGTGGTGCTTGGATGAACTCGCAAAGATCATGGAACGAAGAAGAAGTGATGATGGACATTTTGTTATGCCGGTTTTCTATGATGTGGATCCATCCCATGTCAGGAAACAGACTGGGAGCTTCGGAGAAGCATTTTGTAGACACGAAGAGCGTTTCAAGGAGGATATGGATAAGGTGGAGGAGTGGAGAAGAGCACTTAGAGATGTTGCGGATCTGGCAGGGATGGTTTTGGAAGATAGGTACGAATCGCAGTTTATCCAAGATATTGTTAAAGAGATTGGAAATAAATTAGACCCCAAAGCATTGAACGTTGCCCCATATGCTGTTGGTATAGACGATCGTGTGCGAGGCATAAACATGTGGTTAGAAGACGGATCAAATGATGTTGGTGTAGCTGTGATATATGGGATGGGTGGAATTGGCAAGACCACCATTGCCAAAGCTGCTTATAACCTCAACCATGCAAGATTTGAAAGTAGCAGTTTTCTTGCAGATATTAGAGAAACTTCAGAACAACCCAATGGTTTCGTTCGCTTGCAAAGGAAACTTCTTTCGGATATCCAAAAGGGGAAAGCAAATAAAATATACAGCACAAATGAAGGAATAATCAAGATCAAACATGCTGTATGTTACAAAAGAGTTCTTATTGTTCTTGACGATGTGAACAATTTGGATCAATTTAACGCAATTCTTGGAATCAGGGAATGGTTTTATCCAGGAAGTAAAATCATCATAACAACGAGACACGAAAATTTGTTAAGGGCACATGAAGATCATGCAATGTTCAAGGTTGAGGAATTGAATGAGTATGAATCACTTGAGCTTTTCAGTTGGCATACCGTCGGACAATCCCATCCAATTGAAGGTTACATAGAACTTTCGAGATCTGTTGTAAAACATTGTGGAGGGCTTCCGTTAGCTCTTCAAGTTCTCGGGTCTTCCTTGTCTGGGAAAGAAGTAGATGTATGGCAAAGTGCATTACAAAAGTTATACGAAATTCCTAATGGCAAAGTTCAAAAAGTTCTTCGAATAAGCTATGATTCTCTACAAGATGATCATGACAAAAATTTATTCCTCCACATAGCCTGTTTCATCATTGGAAAGGAGAAGAATTTTGCAATTACAGTACTGGACAGCCTTGATTTTTACACGAGGATTGGAATTCAAAATCTGGTAGACAGATGTCTCGTAAAAATTGACAATGAAGACAACAGGTTGGGCATGCATCACTTGCTTAGAGACATGGGAAGGGGAATTATTCGGGAAGAATCACCTCAAGATCCCGGAAAACGTAGTAGAGTGTGGCATAAAGATGCCTTTAACATTTTGAGAAAAAGAACTGGTACAAAAAAGGTTAAGGGCCTCATGCTCGACCTGCCCGTGTTGATGGAAGATGAGTCTTACAAGACATTATTTGGTAAAAGTAACAGAAAACGATGCCATGTTGAAGATTATGAAGGAAATGCTTCAAGACGTCGTCGGATTGATTACTTTTCTTGGAAATCAATTGCATTGAGCTTTTCCTCAACAAATTTAGCTCAACGTTCTACATCAAATGAGATGGACTTCAAAACAGAGGCATTTAGAGGGATGAATAGTCTTCAGCTTCTCCTGCTCAATAATGTCCAAATCAATGGAGACTTTGAAGATTTTCCAAAAAATTTGACATGGTTGTCTTGGCGAGGATTTCCTTTAAAATCAATACCAGCCAATTTTTTCTTGGAATATCTAGTTGTTCTTGACTTGCGGAATAGCAGCCTGGAACATGCTTGGAAGGGAACCAGGTTTCTTGGATGGATGAAAATTCTCAATCTCAGTCATTCGCACGGCCTTAAAACAACCCCTGACATGTCGGGACTCCTTAACCTTGAGAGACTAATTCTTAAAGATTGCATAAATTTGGTCGAGCTCGATGAGTCAGTTGGAGACTTAGAGAAACTTGTTTTATTGAATCTAAGGGACTGCAAAAATCTCATGAAGATTCCAGCAAGTGTTAGTAGGTTGGGATCTCTTCAGGACCTCATTCTTTCCGGTTGCTCAAAGCTTGGTCTCCATTCCAATACGAAAGCAACAACTGAGGAACACTCCTCATCTATTGCTACAAAGAAATTCAACCTGTTATCAACTAAATTATGGCAATCTATCGTGTCGTGGATATTACCAAGGAAAAATCTTGAATTGACCGGTTTCTCATTTAAAAGTTTACCACATTCTTTAGAAGTCTTGCCAACTGCAATTTATCAGAAATTCCTAGTGATCTTGGTTTCTTATCGGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

849

Amino Acids

97.11

Weight (kDa)

8.25

Isoelectric Point (pI)

41.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TIR PF01582 22 - 189 1.6e-53 TIR domain
TIR_2 PF13676 25 - 120 2.1e-16 TIR domain
NB-ARC PF00931 202 - 367 1.1e-19 NB-ARC domain
WHD_ROQ1 PF23282 441 - 513 2.5e-16 Disease resistance protein Roq1-like, winged-helix domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20301 FvH4_2g20310 FvH4_2g20310 FvH4_2g20700
malus_domestica MD07G1079200.v1.1 MD07G1079300.v1.1 MD07G1079400.v1.1 MD12G1024400.v1.1 MD15G1375000.v1.1 MD15G1375200.v1.1 MD15G1375500.v1.1 MD15G1376100.v1.1 MD15G1376200.v1.1 MD15G1376300.v1.1 MD17G1274300.v1.1 MD17G1275000.v1.1 MD17G1275400.v1.1 MD17G1275900.v1.1 MD17G1276000.v1.1 MD17G1276600.v1.1 MD17G1277700.v1.1
prunus_persica Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.3G009700_v2.0.a1 Prupe.3G010100_v2.0.a1 Prupe.3G010300_v2.0.a1 Prupe.3G130700_v2.0.a1 Prupe.3G130800_v2.0.a1 Prupe.3G130900_v2.0.a1
pyrus_communis pycom07g06290 pycom07g06320 pycom15g33580 pycom15g33620 pycom17g27240 pycom17g27360 pycom17g27390 pycom17g27400 pycom17g27410 pycom17g27450 pycom17g27530
rosa_chinensis RchiOBHm_Chr4g0405381 RchiOBHm_Chr6g0286441
rosa_laevigata RLG00000008845 RLG00000012572
rosa_multiflora Rmu_sc0000575.1_g000003 Rmu_sc0003585.1_g000001 Rmu_sc0027178.1_g000001 Rmu_sc0042065.1_g000001
rosa_roxburghii Rroxscaffold_4G00313580 Rroxscaffold_5G00349860 Rroxscaffold_7G00182360
rosa_rugosa Rorug01G0140300.1 Rorug01G0140400.1 Rorug04G0057900 Rorug04G0057900 Rorug04G0058000 Rorug04G0058100 Rorug04G0058200 Rorug06G0179200 Rorug06G0184100
rosa_samantha Rh4AG131500 Rh4BG126200 Rh4BG126300 Rh4CG138700 Rh4DG125600 Rh6AG292000 Rh6BG295500 Rh6BG300700 Rh6CG296200 Rh6DG288000
rosa_wichuraiana Rw1G013150 Rw1G013160 Rw4G010650 Rw6G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 717
AasI GACNNNNNNGTC 1 cut(s) 1939
AatII GACGTC 1 cut(s) 1744
Acc36I ACCTGC 1 cut(s) 1650
AccI GTMKAC 2 cut(s) 406, 1443
AciI CCGC 4 cut(s) 25, 100, 476, 2014
AclI AACGTT 2 cut(s) 576, 1810
AclWI GGATC 7 cut(s) 350, 363, 486, 649, 948, 1541, 2281
AcuI CTGAAG 3 cut(s) 759, 1853, 2264
AcyI GRCGYC 1 cut(s) 1741
AfaI GTAC 3 cut(s) 509, 1395, 1612
AfiI CCNNNNNNNGG 6 cut(s) 24, 133, 270, 369, 1130, 1215
AflIII ACRYGT 2 cut(s) 624, 2115
AgeI ACCGGT 2 cut(s) 54, 2450
AjnI CCWGG 3 cut(s) 982, 2025, 2048
Alw21I GWGCWC 2 cut(s) 463, 2178
Alw26I GTCTC 7 cut(s) 1003, 1457, 1500, 1899, 2134, 2187, 2321
AlwI GGATC 7 cut(s) 350, 363, 486, 649, 948, 1541, 2281
Ama87I CYCGRG 1 cut(s) 1199
AoxI GGCC 2 cut(s) 1627, 2095
ApeKI GCWGC 6 cut(s) 5, 8, 28, 194, 710, 2022
AsiGI ACCGGT 2 cut(s) 54, 2450
Asp700I GAANNNNTTC 2 cut(s) 1732, 1917
AspS9I GGNCC 2 cut(s) 1627, 2284
AsuC2I CCSGG 1 cut(s) 1551
AsuHPI GGTGA 3 cut(s) 101, 110, 1530
AsuII TTCGAA 1 cut(s) 1294
AvaI CYCGRG 1 cut(s) 1199
AvaII GGWCC 1 cut(s) 2284
BaeGI GKGCMC 1 cut(s) 1033
BamHI GGATCC 1 cut(s) 355
BanII GRGCYC 1 cut(s) 2178
BauI CACGAG 1 cut(s) 1417
BbsI GAAGAC 5 cut(s) 235, 642, 1197, 1479, 1859
Bbv12I GWGCWC 2 cut(s) 463, 2178
BbvI GCAGC 4 cut(s) 15, 206, 697, 2034
BccI CCATC 9 cut(s) 29, 314, 367, 484, 670, 1128, 1648, 1822, 2055
BceAI ACGGC 1 cut(s) 2110
BcgI CGANNNNNNTGC 2 cut(s) 239, 273
BciT130I CCWGG 3 cut(s) 984, 2027, 2050
BclI TGATCA 1 cut(s) 1321
BcnI CCSGG 1 cut(s) 1551
BcoDI GTCTC 7 cut(s) 1003, 1457, 1500, 1899, 2134, 2187, 2321
BfaI CTAG 3 cut(s) 267, 1997, 2519
BfuAI ACCTGC 1 cut(s) 1650
BglII AGATCT 1 cut(s) 1151
BisI GCNGC 7 cut(s) 6, 9, 26, 29, 195, 711, 2023
BlsI GCNGC 7 cut(s) 7, 10, 27, 30, 196, 712, 2024
BmcAI AGTACT 1 cut(s) 1395
Bme1390I CCNGG 4 cut(s) 984, 1551, 2027, 2050
Bme18I GGWCC 1 cut(s) 2284
BmeT110I CYCGRG 1 cut(s) 1199
BmgT120I GGNCC 2 cut(s) 1627, 2284
BmiI GGNNCC 2 cut(s) 357, 2047
BmrFI CCNGG 4 cut(s) 984, 1551, 2027, 2050
BmrI ACTGGG 1 cut(s) 390
BmsI GCATC 3 cut(s) 1501, 1570, 1694
BmuI ACTGGG 1 cut(s) 390
BoxI GACNNNNGTC 1 cut(s) 1449
BpiI GAAGAC 5 cut(s) 235, 642, 1197, 1479, 1859
BplI GAGNNNNNCTC 2 cut(s) 2336, 2368
Bpu14I TTCGAA 1 cut(s) 1294
BpuEI CTTGAG 4 cut(s) 97, 1106, 1527, 2156
BpuMI CCSGG 1 cut(s) 1551
BsaBI GATNNNNATC 1 cut(s) 354
BsaHI GRCGYC 1 cut(s) 1741
BsaI GGTCTC 1 cut(s) 2321
BsaJI CCNNGG 1 cut(s) 2429
BsaWI WCCGGW 3 cut(s) 54, 2297, 2450
Bsc4I CCNNNNNNNGG 6 cut(s) 24, 133, 270, 369, 1130, 1215
Bse118I RCCGGY 3 cut(s) 54, 337, 2450
Bse1I ACTGG 3 cut(s) 385, 1401, 1612
Bse3DI GCAATG 2 cut(s) 699, 1053
Bse8I GATNNNNATC 1 cut(s) 354
BseBI CCWGG 3 cut(s) 984, 2027, 2050
BseDI CCNNGG 1 cut(s) 2429
BseGI GGATG 8 cut(s) 286, 359, 495, 681, 1120, 1863, 2066, 2070
BseJI GATNNNNATC 1 cut(s) 354
BseLI CCNNNNNNNGG 6 cut(s) 24, 133, 270, 369, 1130, 1215
BseMI GCAATG 2 cut(s) 699, 1053
BseMII CTCAG 2 cut(s) 2095, 2334
BseNI ACTGG 3 cut(s) 385, 1401, 1612
BseRI GAGGAG 3 cut(s) 195, 461, 2344
BseSI GKGCMC 1 cut(s) 1033
BseXI GCAGC 4 cut(s) 15, 206, 697, 2034
Bsh1285I CGRYCG 1 cut(s) 607
BshFI GGCC 2 cut(s) 1629, 2097
BshTI ACCGGT 2 cut(s) 54, 2450
BsiEI CGRYCG 1 cut(s) 607
BsiHKAI GWGCWC 2 cut(s) 463, 2178
BsiHKCI CYCGRG 1 cut(s) 1199
BsiSI CCGG 5 cut(s) 55, 338, 1551, 2298, 2451
BslFI GGGAC 2 cut(s) 2136, 2240
BslI CCNNNNNNNGG 6 cut(s) 24, 133, 270, 369, 1130, 1215
BsmAI GTCTC 7 cut(s) 1003, 1457, 1500, 1899, 2134, 2187, 2321
BsmFI GGGAC 2 cut(s) 2136, 2240
BsmI GAATGC 1 cut(s) 71
BsnI GGCC 2 cut(s) 1629, 2097
Bso31I GGTCTC 1 cut(s) 2321
BsoBI CYCGRG 1 cut(s) 1199
Bsp119I TTCGAA 1 cut(s) 1294
Bsp1286I GDGCHC 3 cut(s) 463, 1033, 2178
BspACI CCGC 4 cut(s) 25, 100, 476, 2014
BspANI GGCC 2 cut(s) 1629, 2097
BspCNI CTCAG 2 cut(s) 2094, 2335
BspHI TCATGA 2 cut(s) 1324, 2241
BspLI GGNNCC 2 cut(s) 357, 2047
BspMI ACCTGC 1 cut(s) 1650
BspPI GGATC 7 cut(s) 350, 363, 486, 649, 948, 1541, 2281
BspQI GCTCTTC 3 cut(s) 408, 451, 1194
BspT104I TTCGAA 1 cut(s) 1294
BspTNI GGTCTC 1 cut(s) 2321
BsrDI GCAATG 2 cut(s) 699, 1053
BsrFI RCCGGY 3 cut(s) 54, 337, 2450
BsrI ACTGG 3 cut(s) 385, 1401, 1612
BssAI RCCGGY 3 cut(s) 54, 337, 2450
BssECI CCNNGG 1 cut(s) 2429
BssNI GRCGYC 1 cut(s) 1741
BssSI CACGAG 1 cut(s) 1417
BssT1I CCWWGG 1 cut(s) 2429
Bst2BI CACGAG 1 cut(s) 1417
Bst2UI CCWGG 3 cut(s) 984, 2027, 2050
Bst4CI ACNGT 2 cut(s) 1108, 1393
Bst6I CTCTTC 4 cut(s) 408, 451, 1194, 2283
BstACI GRCGYC 1 cut(s) 1741
BstAPI GCANNNNNTGC 1 cut(s) 1498
BstBI TTCGAA 1 cut(s) 1294
BstC8I GCNNGC 3 cut(s) 141, 803, 1490
BstDEI CTNAG 6 cut(s) 464, 1502, 2081, 2197, 2222, 2343
BstF5I GGATG 8 cut(s) 286, 359, 495, 681, 1120, 1863, 2066, 2070
BstMAI GTCTC 7 cut(s) 1003, 1457, 1500, 1899, 2134, 2187, 2321
BstMCI CGRYCG 1 cut(s) 607
BstMWI GCNNNNNNNGC 6 cut(s) 482, 587, 710, 1498, 1642, 1879
BstNI CCWGG 3 cut(s) 984, 2027, 2050
BstNSI RCATGY 5 cut(s) 628, 890, 1492, 2036, 2119
BstPAI GACNNNNGTC 1 cut(s) 1449
BstSCI CCNGG 4 cut(s) 982, 1549, 2025, 2048
BstSLI GKGCMC 1 cut(s) 1033
BstV1I GCAGC 4 cut(s) 15, 206, 697, 2034
BstV2I GAAGAC 5 cut(s) 235, 642, 1197, 1479, 1859
BstX2I RGATCY 5 cut(s) 355, 478, 1151, 1546, 2273
BstXI CCANNNNNNTGG 1 cut(s) 1901
BstYI RGATCY 5 cut(s) 355, 478, 1151, 1546, 2273
BsuRI GGCC 2 cut(s) 1629, 2097
BtsCI GGATG 8 cut(s) 286, 359, 495, 681, 1120, 1863, 2066, 2070
BveI ACCTGC 1 cut(s) 1650
Cac8I GCNNGC 3 cut(s) 141, 803, 1490
CciI TCATGA 2 cut(s) 1324, 2241
Cfr10I RCCGGY 3 cut(s) 54, 337, 2450
Cfr13I GGNCC 2 cut(s) 1627, 2284
CsiI ACCWGGT 1 cut(s) 2048
Csp6I GTAC 3 cut(s) 508, 1394, 1611
CspAI ACCGGT 2 cut(s) 54, 2450
CviQI GTAC 3 cut(s) 508, 1394, 1611
DdeI CTNAG 6 cut(s) 464, 1502, 2081, 2197, 2222, 2343
DraI TTTAAA 2 cut(s) 1962, 2464
DrdI GACNNNNNNGTC 1 cut(s) 1939
DseDI GACNNNNNNGTC 1 cut(s) 1939
Eam1104I CTCTTC 4 cut(s) 408, 451, 1194, 2283
EarI CTCTTC 4 cut(s) 408, 451, 1194, 2283
Ecl136II GAGCTC 1 cut(s) 2176
Eco130I CCWWGG 1 cut(s) 2429
Eco24I GRGCYC 1 cut(s) 2178
Eco31I GGTCTC 1 cut(s) 2321
Eco32I GATATC 1 cut(s) 826
Eco47I GGWCC 1 cut(s) 2284
Eco53kI GAGCTC 1 cut(s) 2176
Eco57I CTGAAG 3 cut(s) 759, 1853, 2264
Eco88I CYCGRG 1 cut(s) 1199
EcoICRI GAGCTC 1 cut(s) 2176
EcoO109I RGGNCCY 2 cut(s) 1627, 2284
EcoRI GAATTC 1 cut(s) 1428
EcoRII CCWGG 3 cut(s) 982, 2025, 2048
EcoRV GATATC 1 cut(s) 826
EcoT14I CCWWGG 1 cut(s) 2429
EcoT22I ATGCAT 2 cut(s) 73, 1494
EcoT38I GRGCYC 1 cut(s) 2178
ErhI CCWWGG 1 cut(s) 2429
FaqI GGGAC 2 cut(s) 2136, 2240
FauI CCCGC 1 cut(s) 107
FauNDI CATATG 1 cut(s) 586
FbaI TGATCA 1 cut(s) 1321
FblI GTMKAC 2 cut(s) 406, 1443
Fnu4HI GCNGC 7 cut(s) 6, 9, 26, 29, 195, 711, 2023
FokI GGATG 8 cut(s) 293, 346, 502, 688, 1107, 1870, 2073, 2077
FriOI GRGCYC 1 cut(s) 2178
Fsp4HI GCNGC 7 cut(s) 6, 9, 26, 29, 195, 711, 2023
FspBI CTAG 3 cut(s) 267, 1997, 2519
GluI GCNGC 7 cut(s) 6, 9, 26, 29, 195, 711, 2023
HaeIII GGCC 2 cut(s) 1629, 2097
HapII CCGG 5 cut(s) 55, 338, 1551, 2298, 2451
Hin1I GRCGYC 1 cut(s) 1741
HindIII AAGCTT 1 cut(s) 2309
HpaII CCGG 5 cut(s) 55, 338, 1551, 2298, 2451
HphI GGTGA 3 cut(s) 101, 110, 1530
Hpy166II GTNNAC 4 cut(s) 407, 931, 1444, 2471
Hpy188I TCNGA 9 cut(s) 86, 115, 250, 392, 778, 823, 1112, 1749, 2511
Hpy8I GTNNAC 4 cut(s) 407, 931, 1444, 2471
Hpy99I CGWCG 3 cut(s) 1112, 1746, 1749
HpyAV CCTTC 5 cut(s) 860, 1124, 1509, 1718, 2035
HpyCH4III ACNGT 2 cut(s) 1108, 1393
HpyCH4IV ACGT 4 cut(s) 576, 1558, 1741, 1810
HpyF10VI GCNNNNNNNGC 6 cut(s) 482, 587, 710, 1498, 1642, 1879
HpyF3I CTNAG 6 cut(s) 464, 1502, 2081, 2197, 2222, 2343
HpySE526I ACGT 4 cut(s) 576, 1558, 1741, 1810
Hsp92I GRCGYC 1 cut(s) 1741
Ksp22I TGATCA 1 cut(s) 1321
LguI GCTCTTC 3 cut(s) 408, 451, 1194
LmnI GCTCC 2 cut(s) 136, 384
Lsp1109I GCAGC 4 cut(s) 15, 206, 697, 2034
LweI GCATC 3 cut(s) 1501, 1570, 1694
MabI ACCWGGT 1 cut(s) 2048
MaeI CTAG 3 cut(s) 267, 1997, 2519
MaeII ACGT 4 cut(s) 576, 1558, 1741, 1810
MaeIII GTNAC 3 cut(s) 896, 1133, 1691
MfeI CAATTG 2 cut(s) 1125, 1773
MflI RGATCY 5 cut(s) 355, 478, 1151, 1546, 2273
MhlI GDGCHC 3 cut(s) 463, 1033, 2178
MlyI GAGTC 4 cut(s) 230, 1673, 2118, 2192
MmeI TCCRAC 3 cut(s) 1090, 1727, 2170
Mph1103I ATGCAT 2 cut(s) 73, 1494
MroXI GAANNNNTTC 2 cut(s) 1732, 1917
MslI CAYNNNNRTG 2 cut(s) 623, 1578
MspI CCGG 5 cut(s) 55, 338, 1551, 2298, 2451
MspR9I CCNGG 4 cut(s) 984, 1551, 2027, 2050
MunI CAATTG 2 cut(s) 1125, 1773
Mva1269I GAATGC 1 cut(s) 71
MvaI CCWGG 3 cut(s) 984, 2027, 2050
MwoI GCNNNNNNNGC 6 cut(s) 482, 587, 710, 1498, 1642, 1879
NciI CCSGG 1 cut(s) 1551
NdeI CATATG 1 cut(s) 586
NlaIV GGNNCC 2 cut(s) 357, 2047
NsiI ATGCAT 2 cut(s) 73, 1494
NspI RCATGY 5 cut(s) 628, 890, 1492, 2036, 2119
NspV TTCGAA 1 cut(s) 1294
PaeI GCATGC 1 cut(s) 1492
PagI TCATGA 2 cut(s) 1324, 2241
PciI ACATGT 2 cut(s) 624, 2115
PciSI GCTCTTC 3 cut(s) 408, 451, 1194
PcsI WCGNNNNNNNCGW 2 cut(s) 246, 1644
PctI GAATGC 1 cut(s) 71
PdmI GAANNNNTTC 2 cut(s) 1732, 1917
PfeI GAWTC 8 cut(s) 147, 512, 963, 1079, 1307, 1535, 2218, 2248
PflFI GACNNNGTC 1 cut(s) 1743
PfoI TCCNGGA 2 cut(s) 982, 1549
PinAI ACCGGT 2 cut(s) 54, 2450
PkrI GCNGC 7 cut(s) 7, 10, 27, 30, 196, 712, 2024
Ple19I CGATCG 1 cut(s) 607
PleI GAGTC 4 cut(s) 229, 1672, 2118, 2191
PpsI GAGTC 4 cut(s) 229, 1672, 2118, 2191
PpuMI RGGWCCY 1 cut(s) 2284
PscI ACATGT 2 cut(s) 624, 2115
PshAI GACNNNNGTC 1 cut(s) 1449
PsiI TTATAA 1 cut(s) 717
Psp124BI GAGCTC 1 cut(s) 2178
Psp1406I AACGTT 2 cut(s) 576, 1810
Psp5II RGGWCCY 1 cut(s) 2284
Psp6I CCWGG 3 cut(s) 982, 2025, 2048
PspGI CCWGG 3 cut(s) 982, 2025, 2048
PspN4I GGNNCC 2 cut(s) 357, 2047
PspPI GGNCC 2 cut(s) 1627, 2284
PspPPI RGGWCCY 1 cut(s) 2284
PsuI RGATCY 5 cut(s) 355, 478, 1151, 1546, 2273
PsyI GACNNNGTC 1 cut(s) 1743
PvuI CGATCG 1 cut(s) 607
RsaI GTAC 3 cut(s) 509, 1395, 1612
RsaNI GTAC 3 cut(s) 508, 1394, 1611
RseI CAYNNNNRTG 2 cut(s) 623, 1578
SacI GAGCTC 1 cut(s) 2178
SapI GCTCTTC 3 cut(s) 408, 451, 1194
SatI GCNGC 7 cut(s) 6, 9, 26, 29, 195, 711, 2023
Sau96I GGNCC 2 cut(s) 1627, 2284
ScaI AGTACT 1 cut(s) 1395
SchI GAGTC 4 cut(s) 230, 1673, 2118, 2192
ScrFI CCNGG 4 cut(s) 984, 1551, 2027, 2050
SduI GDGCHC 3 cut(s) 463, 1033, 2178
SexAI ACCWGGT 1 cut(s) 2048
SfaNI GCATC 3 cut(s) 1501, 1570, 1694
SfuI TTCGAA 1 cut(s) 1294
SinI GGWCC 1 cut(s) 2284
SmiMI CAYNNNNRTG 2 cut(s) 623, 1578
SmlI CTYRAG 4 cut(s) 76, 1085, 1542, 2135
SmoI CTYRAG 4 cut(s) 76, 1085, 1542, 2135
SphI GCATGC 1 cut(s) 1492
SsiI CCGC 4 cut(s) 25, 100, 476, 2014
SspI AATATT 1 cut(s) 190
SspMI CTAG 3 cut(s) 267, 1997, 2519
SstI GAGCTC 1 cut(s) 2178
StyD4I CCNGG 4 cut(s) 982, 1549, 2025, 2048
StyI CCWWGG 1 cut(s) 2429
TaaI ACNGT 2 cut(s) 1108, 1393
TaiI ACGT 4 cut(s) 579, 1561, 1744, 1813
TaqI TCGA 5 cut(s) 1148, 1294, 1638, 2172, 2178
TatI WGTACW 1 cut(s) 1393
TauI GCSGC 1 cut(s) 28
TfiI GAWTC 8 cut(s) 147, 512, 963, 1079, 1307, 1535, 2218, 2248
TseI GCWGC 6 cut(s) 5, 8, 28, 194, 710, 2022
TspGWI ACGGA 2 cut(s) 654, 1170
Tth111I GACNNNGTC 1 cut(s) 1743
VpaK11BI GGWCC 1 cut(s) 2284
XceI RCATGY 5 cut(s) 628, 890, 1492, 2036, 2119
XcmI CCANNNNNNNNNTGG 1 cut(s) 1984
XmiI GTMKAC 2 cut(s) 406, 1443
XmnI GAANNNNTTC 2 cut(s) 1732, 1917
XspI CTAG 3 cut(s) 267, 1997, 2519
ZraI GACGTC 1 cut(s) 1742
ZrmI AGTACT 1 cut(s) 1395
Zsp2I ATGCAT 2 cut(s) 73, 1494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.