Rorug06G0179200
ERF Family

Belongs to the ABC transporter superfamily. ABCG family. PDR (TC 3.A.1.205) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0000654
Physical Location & Seq
Forward (+)
28265574 .. 28267850
2277 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0179200.1

Sequence Viewer

Length: 681 bp
ATGGACGAGACGATGATGTACGAGAACGTGTGGGTGGACGAGGTGTCAGCGTCCGACTCATTTTCTTTTAATGTGCCCAATCCAGAAAAGATCGACAGGGATGCTTGGAGTACACAGCTGGTTCCGGAATTTGCTAAGCTTGGCTTAGTATGCACATGGGGGAATGAGCATGAAATGGGATGCACAATCGATCCAACAATAGACATTCCACGCTCGGATGTCTTTCTGAGGGCTCAGGATGCTCTCTATGCTTTCATATCTGGTTTCTCGGCAAAGTTGGCATTGAAAGTACTGTCGGGCGAAGAGTGGTTAATCACTAGAGACTTTGAAGACGAGATTAGTCAGGATCTAGTGCGTGAACGGTTCAAGACTTTTATTTCCAAATATGAAAAATTCATGAAGGAGGTTGGTCAGCGGTTCCCCTGTGAACTTAAACCTAATGAACATTCTATCGCTTTTGTGGCAAATGCACGAATATTTGAAATTATGGCGATTCTCGTGTGGCAAGTAGTTGTGCACGGTAATTTGGATGTTGAACAAGAGCTCTATAGTTTGTTGGAGTTTTATGAGAGGCCTTCCGGATTTGAACATAATCCATGCACTGATTCGGGGCCTGGATATGATGATATGATGGAACCTAGCAAATCACTGAATGATCAAATAGGCGAACTACAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
ABC2_membrane ABC_tran ABC_trans_N PDR_assoc

Protein Analysis

226

Amino Acids

25.99

Weight (kDa)

4.4

Isoelectric Point (pI)

30.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000654)

Species Orthologous Gene IDs
fragaria_vesca FvH4_2g20301 FvH4_2g20310 FvH4_2g20310 FvH4_2g20700
malus_domestica MD07G1079200.v1.1 MD07G1079300.v1.1 MD07G1079400.v1.1 MD12G1024400.v1.1 MD15G1375000.v1.1 MD15G1375200.v1.1 MD15G1375500.v1.1 MD15G1376100.v1.1 MD15G1376200.v1.1 MD15G1376300.v1.1 MD17G1274300.v1.1 MD17G1275000.v1.1 MD17G1275400.v1.1 MD17G1275900.v1.1 MD17G1276000.v1.1 MD17G1276600.v1.1 MD17G1277700.v1.1
prunus_persica Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.2G101900_v2.0.a1 Prupe.3G009700_v2.0.a1 Prupe.3G010100_v2.0.a1 Prupe.3G010300_v2.0.a1 Prupe.3G130700_v2.0.a1 Prupe.3G130800_v2.0.a1 Prupe.3G130900_v2.0.a1
pyrus_communis pycom07g06290 pycom07g06320 pycom15g33580 pycom15g33620 pycom17g27240 pycom17g27360 pycom17g27390 pycom17g27400 pycom17g27410 pycom17g27450 pycom17g27530
rosa_chinensis RchiOBHm_Chr4g0405381 RchiOBHm_Chr6g0286441
rosa_laevigata RLG00000008845 RLG00000012572
rosa_multiflora Rmu_sc0000575.1_g000003 Rmu_sc0003585.1_g000001 Rmu_sc0027178.1_g000001 Rmu_sc0042065.1_g000001
rosa_roxburghii Rroxscaffold_4G00313580 Rroxscaffold_5G00349860 Rroxscaffold_7G00182360
rosa_rugosa Rorug01G0140300.1 Rorug01G0140400.1 Rorug04G0057900 Rorug04G0057900 Rorug04G0058000 Rorug04G0058100 Rorug04G0058200 Rorug06G0179200 Rorug06G0184100
rosa_samantha Rh4AG131500 Rh4BG126200 Rh4BG126300 Rh4CG138700 Rh4DG125600 Rh6AG292000 Rh6BG295500 Rh6BG300700 Rh6CG296200 Rh6DG288000
rosa_wichuraiana Rw1G013150 Rw1G013160 Rw4G010650 Rw6G025170

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 2 cut(s) 124, 578
AciI CCGC 1 cut(s) 415
AclWI GGATC 2 cut(s) 185, 354
AcsI RAATTY 2 cut(s) 128, 392
AfaI GTAC 3 cut(s) 20, 112, 291
AflIII ACRYGT 1 cut(s) 27
AgsI TTSAA 6 cut(s) 286, 329, 367, 482, 536, 587
AhdI GACNNNNNGTC 1 cut(s) 43
AjnI CCWGG 1 cut(s) 613
AluBI AGCT 3 cut(s) 118, 139, 544
AluI AGCT 3 cut(s) 118, 139, 544
Alw21I GWGCWC 2 cut(s) 519, 546
Alw26I GTCTC 2 cut(s) 2, 315
Alw44I GTGCAC 1 cut(s) 515
AlwI GGATC 2 cut(s) 185, 354
Aor13HI TCCGGA 2 cut(s) 124, 578
AoxI GGCC 2 cut(s) 572, 611
ApaLI GTGCAC 1 cut(s) 515
ApoI RAATTY 2 cut(s) 128, 392
AspS9I GGNCC 1 cut(s) 611
BaeGI GKGCMC 2 cut(s) 78, 519
BanII GRGCYC 2 cut(s) 235, 546
BauI CACGAG 1 cut(s) 497
BbsI GAAGAC 1 cut(s) 336
Bbv12I GWGCWC 2 cut(s) 519, 546
BccI CCATC 1 cut(s) 625
BcgI CGANNNNNNTGC 2 cut(s) 83, 117
BciT130I CCWGG 1 cut(s) 615
BclI TGATCA 1 cut(s) 655
BcoDI GTCTC 2 cut(s) 2, 315
BfaI CTAG 3 cut(s) 318, 350, 639
BfmI CTRYAG 2 cut(s) 547, 671
BlpI GCTNAGC 1 cut(s) 135
BmcAI AGTACT 1 cut(s) 291
Bme1390I CCNGG 1 cut(s) 615
BmeRI GACNNNNNGTC 1 cut(s) 43
BmgT120I GGNCC 1 cut(s) 611
BmiI GGNNCC 4 cut(s) 123, 419, 612, 636
BmrFI CCNGG 1 cut(s) 615
BmsI GCATC 3 cut(s) 91, 170, 229
BpiI GAAGAC 1 cut(s) 336
Bpu10I CCTNAGC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 135
Bsa29I ATCGAT 1 cut(s) 189
BsaWI WCCGGW 2 cut(s) 124, 578
BseAI TCCGGA 2 cut(s) 124, 578
BseBI CCWGG 1 cut(s) 615
BseCI ATCGAT 1 cut(s) 189
BseGI GGATG 5 cut(s) 106, 185, 223, 244, 535
BseMII CTCAG 2 cut(s) 218, 248
BseSI GKGCMC 2 cut(s) 78, 519
BshFI GGCC 2 cut(s) 574, 613
BshVI ATCGAT 1 cut(s) 189
BsiHKAI GWGCWC 2 cut(s) 519, 546
BsiSI CCGG 2 cut(s) 125, 579
BsmAI GTCTC 2 cut(s) 2, 315
BsmBI CGTCTC 1 cut(s) 2
BsnI GGCC 2 cut(s) 574, 613
Bsp1286I GDGCHC 4 cut(s) 78, 235, 519, 546
Bsp13I TCCGGA 2 cut(s) 124, 578
Bsp143I GATC 4 cut(s) 90, 190, 346, 655
Bsp1720I GCTNAGC 1 cut(s) 135
BspACI CCGC 1 cut(s) 415
BspANI GGCC 2 cut(s) 574, 613
BspCNI CTCAG 2 cut(s) 219, 247
BspDI ATCGAT 1 cut(s) 189
BspEI TCCGGA 2 cut(s) 124, 578
BspHI TCATGA 1 cut(s) 396
BspLI GGNNCC 4 cut(s) 123, 419, 612, 636
BspPI GGATC 2 cut(s) 185, 354
BssMI GATC 4 cut(s) 90, 190, 346, 655
BssSI CACGAG 1 cut(s) 497
Bst2BI CACGAG 1 cut(s) 497
Bst2UI CCWGG 1 cut(s) 615
Bst4CI ACNGT 3 cut(s) 294, 363, 521
Bst6I CTCTTC 1 cut(s) 297
BstDEI CTNAG 4 cut(s) 135, 145, 227, 234
BstF5I GGATG 5 cut(s) 106, 185, 223, 244, 535
BstKTI GATC 4 cut(s) 93, 193, 349, 658
BstMAI GTCTC 2 cut(s) 2, 315
BstMBI GATC 4 cut(s) 90, 190, 346, 655
BstMWI GCNNNNNNNGC 5 cut(s) 150, 239, 248, 278, 461
BstNI CCWGG 1 cut(s) 615
BstSCI CCNGG 1 cut(s) 613
BstSFI CTRYAG 2 cut(s) 547, 671
BstSLI GKGCMC 2 cut(s) 78, 519
BstV2I GAAGAC 1 cut(s) 336
BstX2I RGATCY 1 cut(s) 346
BstYI RGATCY 1 cut(s) 346
Bsu15I ATCGAT 1 cut(s) 189
BsuRI GGCC 2 cut(s) 574, 613
BsuTUI ATCGAT 1 cut(s) 189
BtsCI GGATG 5 cut(s) 106, 185, 223, 244, 535
BtsIMutI CAGTG 2 cut(s) 600, 647
CciI TCATGA 1 cut(s) 396
Cfr13I GGNCC 1 cut(s) 611
ClaI ATCGAT 1 cut(s) 189
CseI GACGC 1 cut(s) 39
Csp6I GTAC 3 cut(s) 19, 111, 290
CviAII CATG 4 cut(s) 156, 170, 397, 597
CviJI RGCY 7 cut(s) 118, 139, 144, 233, 544, 574, 613
CviKI_1 RGCY 7 cut(s) 118, 139, 144, 233, 544, 574, 613
CviQI GTAC 3 cut(s) 19, 111, 290
DdeI CTNAG 4 cut(s) 135, 145, 227, 234
DpnI GATC 4 cut(s) 92, 192, 348, 657
DpnII GATC 4 cut(s) 90, 190, 346, 655
DriI GACNNNNNGTC 1 cut(s) 43
Eam1104I CTCTTC 1 cut(s) 297
Eam1105I GACNNNNNGTC 1 cut(s) 43
EarI CTCTTC 1 cut(s) 297
Ecl136II GAGCTC 1 cut(s) 544
Eco147I AGGCCT 1 cut(s) 574
Eco24I GRGCYC 2 cut(s) 235, 546
Eco53kI GAGCTC 1 cut(s) 544
EcoICRI GAGCTC 1 cut(s) 544
EcoO109I RGGNCCY 1 cut(s) 611
EcoRII CCWGG 1 cut(s) 613
EcoT38I GRGCYC 2 cut(s) 235, 546
Esp3I CGTCTC 1 cut(s) 2
FaeI CATG 4 cut(s) 159, 173, 400, 600
FalI AAGNNNNNCTT 2 cut(s) 128, 160
FatI CATG 4 cut(s) 155, 169, 396, 596
FbaI TGATCA 1 cut(s) 655
FokI GGATG 5 cut(s) 113, 192, 230, 251, 542
FriOI GRGCYC 2 cut(s) 235, 546
FspBI CTAG 3 cut(s) 318, 350, 639
HaeIII GGCC 2 cut(s) 574, 613
HapII CCGG 2 cut(s) 125, 579
HgaI GACGC 1 cut(s) 39
Hin1II CATG 4 cut(s) 159, 173, 400, 600
HindIII AAGCTT 1 cut(s) 137
HinfI GANTC 3 cut(s) 56, 493, 605
HpaII CCGG 2 cut(s) 125, 579
Hpy166II GTNNAC 5 cut(s) 37, 113, 359, 428, 517
Hpy188I TCNGA 3 cut(s) 55, 217, 228
Hpy188III TCNNGA 7 cut(s) 83, 125, 236, 344, 367, 397, 579
Hpy8I GTNNAC 5 cut(s) 37, 113, 359, 428, 517
HpyAV CCTTC 2 cut(s) 394, 585
HpyCH4III ACNGT 3 cut(s) 294, 363, 521
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 5 cut(s) 153, 183, 470, 517, 600
HpyF10VI GCNNNNNNNGC 5 cut(s) 150, 239, 248, 278, 461
HpyF3I CTNAG 4 cut(s) 135, 145, 227, 234
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 4 cut(s) 159, 173, 400, 600
Kpn2I TCCGGA 2 cut(s) 124, 578
Ksp22I TGATCA 1 cut(s) 655
Kzo9I GATC 4 cut(s) 90, 190, 346, 655
LweI GCATC 3 cut(s) 91, 170, 229
MaeI CTAG 3 cut(s) 318, 350, 639
MaeII ACGT 1 cut(s) 27
MalI GATC 4 cut(s) 92, 192, 348, 657
MboI GATC 4 cut(s) 90, 190, 346, 655
MboII GAAGA 2 cut(s) 314, 341
MflI RGATCY 1 cut(s) 346
MhlI GDGCHC 4 cut(s) 78, 235, 519, 546
MluCI AATT 4 cut(s) 128, 392, 483, 523
MlyI GAGTC 1 cut(s) 50
MmeI TCCRAC 3 cut(s) 78, 218, 537
MnlI CCTC 4 cut(s) 34, 222, 397, 564
MroI TCCGGA 2 cut(s) 124, 578
MseI TTAA 3 cut(s) 69, 311, 432
MspA1I CMGCKG 2 cut(s) 118, 415
MspI CCGG 2 cut(s) 125, 579
MspR9I CCNGG 1 cut(s) 615
MvaI CCWGG 1 cut(s) 615
MwoI GCNNNNNNNGC 5 cut(s) 150, 239, 248, 278, 461
NdeII GATC 4 cut(s) 90, 190, 346, 655
NlaIII CATG 4 cut(s) 159, 173, 400, 600
NlaIV GGNNCC 4 cut(s) 123, 419, 612, 636
NmeAIII GCCGAG 1 cut(s) 248
PagI TCATGA 1 cut(s) 396
PceI AGGCCT 1 cut(s) 574
PfeI GAWTC 2 cut(s) 493, 605
PleI GAGTC 1 cut(s) 50
PpsI GAGTC 1 cut(s) 50
Psp124BI GAGCTC 1 cut(s) 546
Psp6I CCWGG 1 cut(s) 613
PspGI CCWGG 1 cut(s) 613
PspN4I GGNNCC 4 cut(s) 123, 419, 612, 636
PspPI GGNCC 1 cut(s) 611
PsuI RGATCY 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 118
RsaI GTAC 3 cut(s) 20, 112, 291
RsaNI GTAC 3 cut(s) 19, 111, 290
SacI GAGCTC 1 cut(s) 546
SaqAI TTAA 3 cut(s) 69, 311, 432
Sau3AI GATC 4 cut(s) 90, 190, 346, 655
Sau96I GGNCC 1 cut(s) 611
ScaI AGTACT 1 cut(s) 291
SchI GAGTC 1 cut(s) 50
ScrFI CCNGG 1 cut(s) 615
SduI GDGCHC 4 cut(s) 78, 235, 519, 546
SetI ASST 8 cut(s) 30, 45, 120, 141, 408, 439, 546, 640
SfaNI GCATC 3 cut(s) 91, 170, 229
SfcI CTRYAG 2 cut(s) 547, 671
Sse9I AATT 4 cut(s) 128, 392, 483, 523
SseBI AGGCCT 1 cut(s) 574
SsiI CCGC 1 cut(s) 415
SspI AATATT 1 cut(s) 477
SspMI CTAG 3 cut(s) 318, 350, 639
SstI GAGCTC 1 cut(s) 546
StuI AGGCCT 1 cut(s) 574
StyD4I CCNGG 1 cut(s) 613
TaaI ACNGT 3 cut(s) 294, 363, 521
TaiI ACGT 1 cut(s) 30
TaqI TCGA 2 cut(s) 93, 189
TasI AATT 4 cut(s) 128, 392, 483, 523
TatI WGTACW 2 cut(s) 110, 289
TfiI GAWTC 2 cut(s) 493, 605
Tru1I TTAA 3 cut(s) 69, 311, 432
Tru9I TTAA 3 cut(s) 69, 311, 432
TscAI CASTG 2 cut(s) 607, 654
TspDTI ATGAA 6 cut(s) 186, 244, 385, 402, 413, 456
TspRI CASTG 2 cut(s) 607, 654
VneI GTGCAC 1 cut(s) 515
XapI RAATTY 2 cut(s) 128, 392
XspI CTAG 3 cut(s) 318, 350, 639
ZrmI AGTACT 1 cut(s) 291
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.