TMV resistance protein N-like
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| WHD_ROQ1 | PF23282 | 62 - 132 | 4.5e-17 | Disease resistance protein Roq1-like, winged-helix domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccII | CGCG | 1 cut(s) | 1165 |
| AccIII | TCCGGA | 1 cut(s) | 1378 |
| AciI | CCGC | 1 cut(s) | 1532 |
| AclWI | GGATC | 1 cut(s) | 73 |
| AcoI | YGGCCR | 1 cut(s) | 1139 |
| AcsI | RAATTY | 5 cut(s) | 141, 634, 777, 1444, 1795 |
| AfaI | GTAC | 4 cut(s) | 469, 1252, 1423, 1659 |
| AfeI | AGCGCT | 1 cut(s) | 1543 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 1195 |
| AflII | CTTAAG | 2 cut(s) | 857, 1204 |
| AflIII | ACRYGT | 4 cut(s) | 739, 972, 1163, 1224 |
| AjiI | CACGTC | 1 cut(s) | 124 |
| AjnI | CCWGG | 5 cut(s) | 406, 755, 1637, 1653, 1822 |
| AluBI | AGCT | 9 cut(s) | 7, 50, 165, 615, 955, 1018, 1203, 1384, 1722 |
| AluI | AGCT | 9 cut(s) | 7, 50, 165, 615, 955, 1018, 1203, 1384, 1722 |
| Alw21I | GWGCWC | 1 cut(s) | 1386 |
| Alw26I | GTCTC | 2 cut(s) | 987, 1331 |
| AlwI | GGATC | 1 cut(s) | 73 |
| Ama87I | CYCGRG | 1 cut(s) | 1334 |
| Aor13HI | TCCGGA | 1 cut(s) | 1378 |
| Aor51HI | AGCGCT | 1 cut(s) | 1543 |
| AoxI | GGCC | 3 cut(s) | 484, 802, 1139 |
| ApoI | RAATTY | 5 cut(s) | 141, 634, 777, 1444, 1795 |
| AseI | ATTAAT | 2 cut(s) | 324, 870 |
| Asp700I | GAANNNNTTC | 4 cut(s) | 582, 624, 996, 1374 |
| AspLEI | GCGC | 1 cut(s) | 1544 |
| AspS9I | GGNCC | 2 cut(s) | 403, 484 |
| AsuC2I | CCSGG | 1 cut(s) | 1143 |
| AsuHPI | GGTGA | 1 cut(s) | 387 |
| AvaI | CYCGRG | 1 cut(s) | 1334 |
| AvaII | GGWCC | 1 cut(s) | 403 |
| AxyI | CCTNAGG | 2 cut(s) | 399, 806 |
| BanII | GRGCYC | 1 cut(s) | 1386 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 1243, 1275 |
| Bbv12I | GWGCWC | 1 cut(s) | 1386 |
| BccI | CCATC | 2 cut(s) | 485, 1706 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 1588, 1622 |
| BciT130I | CCWGG | 5 cut(s) | 408, 757, 1639, 1655, 1824 |
| BclI | TGATCA | 1 cut(s) | 1614 |
| BcnI | CCSGG | 1 cut(s) | 1143 |
| BcoDI | GTCTC | 2 cut(s) | 987, 1331 |
| BfaI | CTAG | 3 cut(s) | 420, 704, 1065 |
| BfoI | RGCGCY | 1 cut(s) | 1545 |
| BfrI | CTTAAG | 2 cut(s) | 857, 1204 |
| BglII | AGATCT | 1 cut(s) | 1739 |
| Bme1390I | CCNGG | 6 cut(s) | 408, 757, 1143, 1639, 1655, 1824 |
| Bme18I | GGWCC | 1 cut(s) | 403 |
| BmeT110I | CYCGRG | 1 cut(s) | 1334 |
| BmgBI | CACGTC | 1 cut(s) | 124 |
| BmgT120I | GGNCC | 2 cut(s) | 403, 484 |
| BmiI | GGNNCC | 5 cut(s) | 42, 405, 754, 1236, 1647 |
| BmrFI | CCNGG | 6 cut(s) | 408, 757, 1143, 1639, 1655, 1824 |
| BmsI | GCATC | 4 cut(s) | 336, 358, 427, 555 |
| BpuEI | CTTGAG | 2 cut(s) | 863, 1007 |
| BpuMI | CCSGG | 1 cut(s) | 1143 |
| BsaBI | GATNNNNATC | 2 cut(s) | 1738, 1842 |
| BsaI | GGTCTC | 1 cut(s) | 987 |
| BsaJI | CCNNGG | 3 cut(s) | 406, 1391, 1786 |
| BsaWI | WCCGGW | 1 cut(s) | 1378 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 1195 |
| Bse1I | ACTGG | 1 cut(s) | 1009 |
| Bse21I | CCTNAGG | 2 cut(s) | 399, 806 |
| Bse8I | GATNNNNATC | 2 cut(s) | 1738, 1842 |
| BseAI | TCCGGA | 1 cut(s) | 1378 |
| BseBI | CCWGG | 5 cut(s) | 408, 757, 1639, 1655, 1824 |
| BseDI | CCNNGG | 3 cut(s) | 406, 1391, 1786 |
| BseGI | GGATG | 2 cut(s) | 1134, 1768 |
| BseJI | GATNNNNATC | 2 cut(s) | 1738, 1842 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 1195 |
| BseMII | CTCAG | 3 cut(s) | 123, 390, 802 |
| BseNI | ACTGG | 1 cut(s) | 1009 |
| Bsh1236I | CGCG | 1 cut(s) | 1165 |
| BshFI | GGCC | 3 cut(s) | 486, 804, 1141 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1386 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1334 |
| BsiSI | CCGG | 2 cut(s) | 1142, 1379 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 1195 |
| BsmAI | GTCTC | 2 cut(s) | 987, 1331 |
| BsnI | GGCC | 3 cut(s) | 486, 804, 1141 |
| Bso31I | GGTCTC | 1 cut(s) | 987 |
| BsoBI | CYCGRG | 1 cut(s) | 1334 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1386 |
| Bsp13I | TCCGGA | 1 cut(s) | 1378 |
| Bsp1407I | TGTACA | 2 cut(s) | 1250, 1421 |
| Bsp143I | GATC | 7 cut(s) | 65, 126, 181, 1243, 1463, 1614, 1739 |
| BspACI | CCGC | 1 cut(s) | 1532 |
| BspANI | GGCC | 3 cut(s) | 486, 804, 1141 |
| BspCNI | CTCAG | 3 cut(s) | 124, 391, 801 |
| BspEI | TCCGGA | 1 cut(s) | 1378 |
| BspFNI | CGCG | 1 cut(s) | 1165 |
| BspHI | TCATGA | 2 cut(s) | 184, 1027 |
| BspLI | GGNNCC | 5 cut(s) | 42, 405, 754, 1236, 1647 |
| BspPI | GGATC | 1 cut(s) | 73 |
| BspQI | GCTCTTC | 2 cut(s) | 57, 719 |
| BspTI | CTTAAG | 2 cut(s) | 857, 1204 |
| BspTNI | GGTCTC | 1 cut(s) | 987 |
| BsrGI | TGTACA | 2 cut(s) | 1250, 1421 |
| BsrI | ACTGG | 1 cut(s) | 1009 |
| BssECI | CCNNGG | 3 cut(s) | 406, 1391, 1786 |
| BssMI | GATC | 7 cut(s) | 65, 126, 181, 1243, 1463, 1614, 1739 |
| BssT1I | CCWWGG | 1 cut(s) | 1391 |
| Bst2UI | CCWGG | 5 cut(s) | 408, 757, 1639, 1655, 1824 |
| Bst4CI | ACNGT | 5 cut(s) | 426, 1034, 1042, 1089, 1878 |
| Bst6I | CTCTTC | 5 cut(s) | 57, 719, 1158, 1313, 1394 |
| BstAFI | CTTAAG | 2 cut(s) | 857, 1204 |
| BstAUI | TGTACA | 2 cut(s) | 1250, 1421 |
| BstC8I | GCNNGC | 1 cut(s) | 1597 |
| BstDEI | CTNAG | 7 cut(s) | 118, 132, 399, 788, 806, 1082, 1535 |
| BstEII | GGTNACC | 1 cut(s) | 1286 |
| BstF5I | GGATG | 2 cut(s) | 1134, 1768 |
| BstFNI | CGCG | 1 cut(s) | 1165 |
| BstH2I | RGCGCY | 1 cut(s) | 1545 |
| BstHHI | GCGC | 1 cut(s) | 1544 |
| BstKTI | GATC | 7 cut(s) | 68, 129, 184, 1246, 1466, 1617, 1742 |
| BstMAI | GTCTC | 2 cut(s) | 987, 1331 |
| BstMBI | GATC | 7 cut(s) | 65, 126, 181, 1243, 1463, 1614, 1739 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 652, 1680 |
| BstNI | CCWGG | 5 cut(s) | 408, 757, 1639, 1655, 1824 |
| BstNSI | RCATGY | 4 cut(s) | 743, 976, 1519, 1576 |
| BstPI | GGTNACC | 1 cut(s) | 1286 |
| BstSCI | CCNGG | 6 cut(s) | 406, 755, 1141, 1637, 1653, 1822 |
| BstUI | CGCG | 1 cut(s) | 1165 |
| BstX2I | RGATCY | 2 cut(s) | 65, 1739 |
| BstYI | RGATCY | 2 cut(s) | 65, 1739 |
| Bsu36I | CCTNAGG | 2 cut(s) | 399, 806 |
| BsuRI | GGCC | 3 cut(s) | 486, 804, 1141 |
| BtrI | CACGTC | 1 cut(s) | 124 |
| BtsCI | GGATG | 2 cut(s) | 1134, 1768 |
| BtsIMutI | CAGTG | 2 cut(s) | 1039, 1599 |
| Cac8I | GCNNGC | 1 cut(s) | 1597 |
| CciI | TCATGA | 2 cut(s) | 184, 1027 |
| CfoI | GCGC | 1 cut(s) | 1544 |
| Cfr13I | GGNCC | 2 cut(s) | 403, 484 |
| CseI | GACGC | 1 cut(s) | 423 |
| CsiI | ACCWGGT | 1 cut(s) | 755 |
| Csp6I | GTAC | 4 cut(s) | 468, 1251, 1422, 1658 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1377, 1412 |
| CviQI | GTAC | 4 cut(s) | 468, 1251, 1422, 1658 |
| DdeI | CTNAG | 7 cut(s) | 118, 132, 399, 788, 806, 1082, 1535 |
| DpnI | GATC | 7 cut(s) | 67, 128, 183, 1245, 1465, 1616, 1741 |
| DpnII | GATC | 7 cut(s) | 65, 126, 181, 1243, 1463, 1614, 1739 |
| DraI | TTTAAA | 1 cut(s) | 669 |
| EaeI | YGGCCR | 1 cut(s) | 1139 |
| Eam1104I | CTCTTC | 5 cut(s) | 57, 719, 1158, 1313, 1394 |
| EarI | CTCTTC | 5 cut(s) | 57, 719, 1158, 1313, 1394 |
| Ecl136II | GAGCTC | 1 cut(s) | 1384 |
| Eco130I | CCWWGG | 1 cut(s) | 1391 |
| Eco24I | GRGCYC | 1 cut(s) | 1386 |
| Eco31I | GGTCTC | 1 cut(s) | 987 |
| Eco47I | GGWCC | 1 cut(s) | 403 |
| Eco47III | AGCGCT | 1 cut(s) | 1543 |
| Eco53kI | GAGCTC | 1 cut(s) | 1384 |
| Eco81I | CCTNAGG | 2 cut(s) | 399, 806 |
| Eco88I | CYCGRG | 1 cut(s) | 1334 |
| Eco91I | GGTNACC | 1 cut(s) | 1286 |
| EcoICRI | GAGCTC | 1 cut(s) | 1384 |
| EcoO109I | RGGNCCY | 2 cut(s) | 403, 484 |
| EcoO65I | GGTNACC | 1 cut(s) | 1286 |
| EcoRI | GAATTC | 1 cut(s) | 1795 |
| EcoRII | CCWGG | 5 cut(s) | 406, 755, 1637, 1653, 1822 |
| EcoT14I | CCWWGG | 1 cut(s) | 1391 |
| EcoT22I | ATGCAT | 4 cut(s) | 109, 351, 442, 1863 |
| EcoT38I | GRGCYC | 1 cut(s) | 1386 |
| ErhI | CCWWGG | 1 cut(s) | 1391 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1198, 1230 |
| FbaI | TGATCA | 1 cut(s) | 1614 |
| FokI | GGATG | 2 cut(s) | 1141, 1755 |
| FriOI | GRGCYC | 1 cut(s) | 1386 |
| FspBI | CTAG | 3 cut(s) | 420, 704, 1065 |
| GlaI | GCGC | 1 cut(s) | 1543 |
| HaeII | RGCGCY | 1 cut(s) | 1545 |
| HaeIII | GGCC | 3 cut(s) | 486, 804, 1141 |
| HapII | CCGG | 2 cut(s) | 1142, 1379 |
| HgaI | GACGC | 1 cut(s) | 423 |
| HhaI | GCGC | 1 cut(s) | 1544 |
| Hin6I | GCGC | 1 cut(s) | 1542 |
| HinP1I | GCGC | 1 cut(s) | 1542 |
| HindIII | AAGCTT | 5 cut(s) | 5, 163, 953, 1016, 1201 |
| HpaII | CCGG | 2 cut(s) | 1142, 1379 |
| HphI | GGTGA | 1 cut(s) | 387 |
| Hpy166II | GTNNAC | 3 cut(s) | 1184, 1251, 1253 |
| Hpy188I | TCNGA | 6 cut(s) | 133, 522, 820, 1231, 1463, 1787 |
| Hpy8I | GTNNAC | 3 cut(s) | 1184, 1251, 1253 |
| HpyAV | CCTTC | 3 cut(s) | 366, 1636, 1773 |
| HpyCH4III | ACNGT | 5 cut(s) | 426, 1034, 1042, 1089, 1878 |
| HpyCH4IV | ACGT | 2 cut(s) | 123, 1224 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 652, 1680 |
| HpyF3I | CTNAG | 7 cut(s) | 118, 132, 399, 788, 806, 1082, 1535 |
| HpySE526I | ACGT | 2 cut(s) | 123, 1224 |
| HspAI | GCGC | 1 cut(s) | 1542 |
| Kpn2I | TCCGGA | 1 cut(s) | 1378 |
| Ksp22I | TGATCA | 1 cut(s) | 1614 |
| Kzo9I | GATC | 7 cut(s) | 65, 126, 181, 1243, 1463, 1614, 1739 |
| LguI | GCTCTTC | 2 cut(s) | 57, 719 |
| LmnI | GCTCC | 3 cut(s) | 1381, 1389, 1651 |
| LweI | GCATC | 4 cut(s) | 336, 358, 427, 555 |
| MabI | ACCWGGT | 1 cut(s) | 755 |
| MaeI | CTAG | 3 cut(s) | 420, 704, 1065 |
| MaeII | ACGT | 2 cut(s) | 123, 1224 |
| MaeIII | GTNAC | 2 cut(s) | 1286, 1872 |
| MalI | GATC | 7 cut(s) | 67, 128, 183, 1245, 1465, 1616, 1741 |
| MboI | GATC | 7 cut(s) | 65, 126, 181, 1243, 1463, 1614, 1739 |
| MfeI | CAATTG | 1 cut(s) | 87 |
| MflI | RGATCY | 2 cut(s) | 65, 1739 |
| MhlI | GDGCHC | 1 cut(s) | 1386 |
| MluI | ACGCGT | 1 cut(s) | 1163 |
| MlyI | GAGTC | 4 cut(s) | 825, 1144, 1330, 1333 |
| MmeI | TCCRAC | 1 cut(s) | 265 |
| Mph1103I | ATGCAT | 4 cut(s) | 109, 351, 442, 1863 |
| MroI | TCCGGA | 1 cut(s) | 1378 |
| MroXI | GAANNNNTTC | 4 cut(s) | 582, 624, 996, 1374 |
| MslI | CAYNNNNRTG | 3 cut(s) | 435, 798, 1032 |
| MspCI | CTTAAG | 2 cut(s) | 857, 1204 |
| MspI | CCGG | 2 cut(s) | 1142, 1379 |
| MspR9I | CCNGG | 6 cut(s) | 408, 757, 1143, 1639, 1655, 1824 |
| MunI | CAATTG | 1 cut(s) | 87 |
| MvaI | CCWGG | 5 cut(s) | 408, 757, 1639, 1655, 1824 |
| MvnI | CGCG | 1 cut(s) | 1165 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 652, 1680 |
| NciI | CCSGG | 1 cut(s) | 1143 |
| NdeII | GATC | 7 cut(s) | 65, 126, 181, 1243, 1463, 1614, 1739 |
| NlaIV | GGNNCC | 5 cut(s) | 42, 405, 754, 1236, 1647 |
| NmuCI | GTSAC | 1 cut(s) | 1872 |
| NsiI | ATGCAT | 4 cut(s) | 109, 351, 442, 1863 |
| NspI | RCATGY | 4 cut(s) | 743, 976, 1519, 1576 |
| PaeR7I | CTCGAG | 1 cut(s) | 1334 |
| PagI | TCATGA | 2 cut(s) | 184, 1027 |
| PciI | ACATGT | 2 cut(s) | 739, 972 |
| PciSI | GCTCTTC | 2 cut(s) | 57, 719 |
| PdmI | GAANNNNTTC | 4 cut(s) | 582, 624, 996, 1374 |
| PfeI | GAWTC | 9 cut(s) | 151, 170, 392, 660, 890, 925, 1276, 1472, 1705 |
| PleI | GAGTC | 4 cut(s) | 825, 1144, 1329, 1333 |
| PpsI | GAGTC | 4 cut(s) | 825, 1144, 1329, 1333 |
| PpuMI | RGGWCCY | 1 cut(s) | 403 |
| PscI | ACATGT | 2 cut(s) | 739, 972 |
| PshBI | ATTAAT | 2 cut(s) | 324, 870 |
| Psp124BI | GAGCTC | 1 cut(s) | 1386 |
| Psp5II | RGGWCCY | 1 cut(s) | 403 |
| Psp6I | CCWGG | 5 cut(s) | 406, 755, 1637, 1653, 1822 |
| PspEI | GGTNACC | 1 cut(s) | 1286 |
| PspGI | CCWGG | 5 cut(s) | 406, 755, 1637, 1653, 1822 |
| PspN4I | GGNNCC | 5 cut(s) | 42, 405, 754, 1236, 1647 |
| PspPI | GGNCC | 2 cut(s) | 403, 484 |
| PspPPI | RGGWCCY | 1 cut(s) | 403 |
| PsuI | RGATCY | 2 cut(s) | 65, 1739 |
| RsaI | GTAC | 4 cut(s) | 469, 1252, 1423, 1659 |
| RsaNI | GTAC | 4 cut(s) | 468, 1251, 1422, 1658 |
| RseI | CAYNNNNRTG | 3 cut(s) | 435, 798, 1032 |
| SacI | GAGCTC | 1 cut(s) | 1386 |
| SapI | GCTCTTC | 2 cut(s) | 57, 719 |
| Sau3AI | GATC | 7 cut(s) | 65, 126, 181, 1243, 1463, 1614, 1739 |
| Sau96I | GGNCC | 2 cut(s) | 403, 484 |
| SchI | GAGTC | 4 cut(s) | 825, 1144, 1330, 1333 |
| ScrFI | CCNGG | 6 cut(s) | 408, 757, 1143, 1639, 1655, 1824 |
| SduI | GDGCHC | 1 cut(s) | 1386 |
| SexAI | ACCWGGT | 1 cut(s) | 755 |
| SfaNI | GCATC | 4 cut(s) | 336, 358, 427, 555 |
| Sfr274I | CTCGAG | 1 cut(s) | 1334 |
| SinI | GGWCC | 1 cut(s) | 403 |
| SlaI | CTCGAG | 1 cut(s) | 1334 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 435, 798, 1032 |
| SmlI | CTYRAG | 5 cut(s) | 842, 857, 986, 1204, 1334 |
| SmoI | CTYRAG | 5 cut(s) | 842, 857, 986, 1204, 1334 |
| SsiI | CCGC | 1 cut(s) | 1532 |
| SspI | AATATT | 1 cut(s) | 1418 |
| SspMI | CTAG | 3 cut(s) | 420, 704, 1065 |
| SstI | GAGCTC | 1 cut(s) | 1386 |
| StyD4I | CCNGG | 6 cut(s) | 406, 755, 1141, 1637, 1653, 1822 |
| StyI | CCWWGG | 1 cut(s) | 1391 |
| TaaI | ACNGT | 5 cut(s) | 426, 1034, 1042, 1089, 1878 |
| TaiI | ACGT | 2 cut(s) | 126, 1227 |
| TaqI | TCGA | 2 cut(s) | 1335, 1608 |
| TatI | WGTACW | 2 cut(s) | 1250, 1421 |
| TfiI | GAWTC | 9 cut(s) | 151, 170, 392, 660, 890, 925, 1276, 1472, 1705 |
| TscAI | CASTG | 2 cut(s) | 1039, 1606 |
| TseFI | GTSAC | 1 cut(s) | 1872 |
| Tsp45I | GTSAC | 1 cut(s) | 1872 |
| TspGWI | ACGGA | 1 cut(s) | 736 |
| TspRI | CASTG | 2 cut(s) | 1039, 1606 |
| Vha464I | CTTAAG | 2 cut(s) | 857, 1204 |
| VpaK11BI | GGWCC | 1 cut(s) | 403 |
| VspI | ATTAAT | 2 cut(s) | 324, 870 |
| XapI | RAATTY | 5 cut(s) | 141, 634, 777, 1444, 1795 |
| XceI | RCATGY | 4 cut(s) | 743, 976, 1519, 1576 |
| XcmI | CCANNNNNNNNNTGG | 3 cut(s) | 691, 901, 1119 |
| XhoI | CTCGAG | 1 cut(s) | 1334 |
| XmnI | GAANNNNTTC | 4 cut(s) | 582, 624, 996, 1374 |
| XspI | CTAG | 3 cut(s) | 420, 704, 1065 |
| Zsp2I | ATGCAT | 4 cut(s) | 109, 351, 442, 1863 |