Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Forward (+)

9820186 .. 9821832

Gene Structure 1647 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ22865

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGGAGGCAAGGGTTTGGGTAAGGAAGGAGCAAAACAAAATTGTAAAGCATCCAATGCATAAAGCCGGCGACGGTTCAGTTCTCAAGGTCGGCGAGGAGAAGGAGATCGGAAAGCCGTGCTTGAAGAAGAATCTTCTCAAGGAAGGTGAAGGCTGGGATATACTCCAAATCCATTACACCGGGATTTTGCTGGAGTTCGATTCGAGCGGCGATAGGGGGACATCGATCAGTTCACTCGGACAAGAAGAACGGAAAGATATGAAAAAGAAATGTCTGGAATGGAAGAGGTTGGCAATGGAACCAGGTGCTTCTTTCTTCCAGAAAATAACTAGTGAGAATTTGAAAGAACAACATCGTTTGTTTTCCTTCTTTATCATTGTTTATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_8

Protein Analysis

128

Amino Acids

14.81

Weight (kDa)

9.06

Isoelectric Point (pI)

36.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	207
AciI	CCGC	1 cut(s)	207
AcsI	RAATTY	1 cut(s)	337
AgsI	TTSAA	2 cut(s)	124, 343
AhlI	ACTAGT	1 cut(s)	329
AjnI	CCWGG	1 cut(s)	301
ApoI	RAATTY	1 cut(s)	337
AsuC2I	CCSGG	1 cut(s)	181
AsuHPI	GGTGA	1 cut(s)	158
BceAI	ACGGC	1 cut(s)	100
BciT130I	CCWGG	1 cut(s)	303
BcnI	CCSGG	1 cut(s)	181
BcuI	ACTAGT	1 cut(s)	329
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	1 cut(s)	208
BlsI	GCNGC	1 cut(s)	209
Bme1390I	CCNGG	2 cut(s)	181, 303
BmiI	GGNNCC	1 cut(s)	300
BmrFI	CCNGG	2 cut(s)	181, 303
BmsI	GCATC	1 cut(s)	58
BpmI	CTGGAG	1 cut(s)	212
BpuEI	CTTGAG	2 cut(s)	68, 122
BpuMI	CCSGG	1 cut(s)	181
Bsa29I	ATCGAT	1 cut(s)	224
Bse118I	RCCGGY	1 cut(s)	65
Bse3DI	GCAATG	1 cut(s)	300
BseBI	CCWGG	1 cut(s)	303
BseCI	ATCGAT	1 cut(s)	224
BseGI	GGATG	1 cut(s)	49
BseMI	GCAATG	1 cut(s)	300
BseRI	GAGGAG	1 cut(s)	110
BseYI	CCCAGC	1 cut(s)	153
BshVI	ATCGAT	1 cut(s)	224
BsiSI	CCGG	2 cut(s)	66, 180
BslFI	GGGAC	1 cut(s)	232
BsmFI	GGGAC	1 cut(s)	232
Bsp143I	GATC	2 cut(s)	105, 225
BspACI	CCGC	1 cut(s)	207
BspDI	ATCGAT	1 cut(s)	224
BspLI	GGNNCC	1 cut(s)	300
BsrBI	CCGCTC	1 cut(s)	207
BsrDI	GCAATG	1 cut(s)	300
BsrFI	RCCGGY	1 cut(s)	65
BssAI	RCCGGY	1 cut(s)	65
BssMI	GATC	2 cut(s)	105, 225
Bst2UI	CCWGG	1 cut(s)	303
Bst4CI	ACNGT	1 cut(s)	74
Bst6I	CTCTTC	1 cut(s)	278
BstAPI	GCANNNNNTGC	1 cut(s)	55
BstC8I	GCNNGC	1 cut(s)	67
BstF5I	GGATG	1 cut(s)	49
BstKTI	GATC	2 cut(s)	108, 228
BstMBI	GATC	2 cut(s)	105, 225
BstMWI	GCNNNNNNNGC	1 cut(s)	55
BstNI	CCWGG	1 cut(s)	303
BstSCI	CCNGG	2 cut(s)	179, 301
Bsu15I	ATCGAT	1 cut(s)	224
BsuTUI	ATCGAT	1 cut(s)	224
BtsCI	GGATG	1 cut(s)	49
Cac8I	GCNNGC	1 cut(s)	67
Cfr10I	RCCGGY	1 cut(s)	65
ClaI	ATCGAT	1 cut(s)	224
CsiI	ACCWGGT	1 cut(s)	301
CviJI	RGCY	3 cut(s)	65, 115, 153
CviKI_1	RGCY	3 cut(s)	65, 115, 153
DpnI	GATC	2 cut(s)	107, 227
DpnII	GATC	2 cut(s)	105, 225
Eam1104I	CTCTTC	1 cut(s)	278
EarI	CTCTTC	1 cut(s)	278
EcoRII	CCWGG	1 cut(s)	301
EcoT22I	ATGCAT	1 cut(s)	60
FaiI	YATR	3 cut(s)	60, 161, 260
FalI	AAGNNNNNCTT	2 cut(s)	104, 136
FaqI	GGGAC	1 cut(s)	232
Fnu4HI	GCNGC	1 cut(s)	208
FokI	GGATG	1 cut(s)	36
Fsp4HI	GCNGC	1 cut(s)	208
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	1 cut(s)	208
GsaI	CCCAGC	1 cut(s)	157
GsuI	CTGGAG	1 cut(s)	212
HapII	CCGG	2 cut(s)	66, 180
HinfI	GANTC	2 cut(s)	130, 200
HpaII	CCGG	2 cut(s)	66, 180
HphI	GGTGA	1 cut(s)	158
Hpy166II	GTNNAC	1 cut(s)	233
Hpy188I	TCNGA	2 cut(s)	110, 239
Hpy188III	TCNNGA	2 cut(s)	275, 319
Hpy8I	GTNNAC	1 cut(s)	233
Hpy99I	CGWCG	1 cut(s)	74
HpyAV	CCTTC	5 cut(s)	19, 94, 137, 143, 376
HpyCH4III	ACNGT	1 cut(s)	74
HpyCH4V	TGCA	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	1 cut(s)	55
KroI	GCCGGC	1 cut(s)	65
KroNI	GCCGGC	1 cut(s)	67
Kzo9I	GATC	2 cut(s)	105, 225
LmnI	GCTCC	1 cut(s)	28
LpnPI	CCDG	8 cut(s)	79, 139, 176, 193, 260, 288, 315, 332
LweI	GCATC	1 cut(s)	58
MabI	ACCWGGT	1 cut(s)	301
MaeI	CTAG	1 cut(s)	330
MalI	GATC	2 cut(s)	107, 227
MbiI	CCGCTC	1 cut(s)	207
MboI	GATC	2 cut(s)	105, 225
MboII	GAAGA	6 cut(s)	125, 136, 139, 257, 295, 307
MluCI	AATT	2 cut(s)	39, 337
MnlI	CCTC	2 cut(s)	88, 279
Mph1103I	ATGCAT	1 cut(s)	60
MroNI	GCCGGC	1 cut(s)	65
MseI	TTAA	1 cut(s)	385
MspI	CCGG	2 cut(s)	66, 180
MspR9I	CCNGG	2 cut(s)	181, 303
MvaI	CCWGG	1 cut(s)	303
MwoI	GCNNNNNNNGC	1 cut(s)	55
NaeI	GCCGGC	1 cut(s)	67
NciI	CCSGG	1 cut(s)	181
NdeII	GATC	2 cut(s)	105, 225
NgoMIV	GCCGGC	1 cut(s)	65
NlaIV	GGNNCC	1 cut(s)	300
NsiI	ATGCAT	1 cut(s)	60
PdiI	GCCGGC	1 cut(s)	67
PfeI	GAWTC	2 cut(s)	130, 200
PkrI	GCNGC	1 cut(s)	209
Psp6I	CCWGG	1 cut(s)	301
PspFI	CCCAGC	1 cut(s)	153
PspGI	CCWGG	1 cut(s)	301
PspN4I	GGNNCC	1 cut(s)	300
SaqAI	TTAA	1 cut(s)	385
SatI	GCNGC	1 cut(s)	208
Sau3AI	GATC	2 cut(s)	105, 225
ScrFI	CCNGG	2 cut(s)	181, 303
SetI	ASST	4 cut(s)	90, 148, 290, 307
SexAI	ACCWGGT	1 cut(s)	301
SfaNI	GCATC	1 cut(s)	58
SmlI	CTYRAG	2 cut(s)	83, 137
SmoI	CTYRAG	2 cut(s)	83, 137
SpeI	ACTAGT	1 cut(s)	329
Sse9I	AATT	2 cut(s)	39, 337
SsiI	CCGC	1 cut(s)	207
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	2 cut(s)	179, 301
TaaI	ACNGT	1 cut(s)	74
TaqI	TCGA	3 cut(s)	198, 203, 224
TasI	AATT	2 cut(s)	39, 337
TauI	GCSGC	1 cut(s)	210
TfiI	GAWTC	2 cut(s)	130, 200
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	275
TspGWI	ACGGA	1 cut(s)	265
XapI	RAATTY	1 cut(s)	337
XspI	CTAG	1 cut(s)	330
Zsp2I	ATGCAT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.