Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Forward (+)

52190151 .. 52190984

Gene Structure 834 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0375400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGGCTAGAAGAAAGGTGAGACTGCACTACATAGCCAATACAAGTTCCCGAAAAAACACATTTAGGAAAAGGAAGAATGGCCTTCTGAAGAAGATGAAAGAGATCACCACTCTTTGTGACATTAAGGCTGCGGCGATCATCTACAGTCCCTTTGAAGCCGAGCCTGAGGTCTTCCCAAATCATCCGGAAGCCCACGAAATGCTGACGAGGTTTCGAAATATGCCGGAGATGGACAAGACAAGAAGGATGATGGACCAGGAGATCTTTTTACGACAACGAATAGACAAAACCCGAGAGCAGATCAGAAAGCAGAAAAGAGACAATCGGGAGAAGCAGATTACTCAAGTTATGTTCGACTACTTAAAGGGGAAAACCATCTCTAACCTTGAAAAGAAGGATCTGTATGACCTCACTTTTATAATCGAACAGAACATCAGGGAGTTAGATATCAAAGAGCAGGCTACCGAAGAGCACAAGCAGGAGGAGAACCAGCTTAACCAGATGCTAGGTGCACCGGCTGCTGTGGAGCTTGACTTGACGAGGAATGCATTTGGAGAGGGAACAAGCAGAGGCGTGGAGCAGCAGCAGCACCCGAACACGATGGATGCACAGAGTATGGAGCAGATGCATTACCAAATGATGCAGGTTGCGGCGCAGAGGCAGCCTCAACAGATGCTCCAACAGCAACCCTGGTTCATGGACATCATGAATCCACCATCGCCGCAAACAATGGACTTCCTGCAGCCGCTACCATCGCTTCCACCAGGAGCGTTCGGAGACAACTGCAGCAGCAATGCTACATGGCCAAATAATTCGTCATTCCGTTTCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_8

Protein Analysis

277

Amino Acids

32.59

Weight (kDa)

8.97

Isoelectric Point (pI)

64.96

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SRF-TF	PF00319	10 - 50	9.8e-15	SRF-type transcription factor (DNA-binding and dimerisation domain)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	419
Acc36I	ACCTGC	1 cut(s)	634
AccIII	TCCGGA	1 cut(s)	184
AciI	CCGC	4 cut(s)	131, 650, 722, 746
AclWI	GGATC	1 cut(s)	405
AcoI	YGGCCR	1 cut(s)	803
AcuI	CTGAAG	1 cut(s)	107
AgsI	TTSAA	2 cut(s)	155, 389
AjnI	CCWGG	3 cut(s)	255, 689, 763
AluBI	AGCT	2 cut(s)	493, 529
AluI	AGCT	2 cut(s)	493, 529
Alw21I	GWGCWC	2 cut(s)	474, 514
Alw26I	GTCTC	3 cut(s)	13, 312, 771
Alw44I	GTGCAC	1 cut(s)	510
AlwI	GGATC	1 cut(s)	405
Ama87I	CYCGRG	1 cut(s)	291
Aor13HI	TCCGGA	1 cut(s)	184
AoxI	GGCC	2 cut(s)	79, 803
ApaLI	GTGCAC	1 cut(s)	510
ApeKI	GCWGC	9 cut(s)	128, 518, 580, 583, 586, 661, 742, 786, 789
ArsI	GACNNNNNNTTYG	2 cut(s)	800, 832
AspLEI	GCGC	1 cut(s)	655
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	28, 97
AsuII	TTCGAA	1 cut(s)	214
AvaI	CYCGRG	1 cut(s)	291
AvaII	GGWCC	1 cut(s)	253
AxyI	CCTNAGG	1 cut(s)	165
BaeGI	GKGCMC	1 cut(s)	514
BalI	TGGCCA	1 cut(s)	805
BbsI	GAAGAC	1 cut(s)	163
Bbv12I	GWGCWC	2 cut(s)	474, 514
BbvI	GCAGC	9 cut(s)	115, 505, 592, 595, 598, 673, 754, 798, 801
BccI	CCATC	6 cut(s)	223, 244, 383, 595, 724, 760
BciT130I	CCWGG	3 cut(s)	257, 691, 765
BcoDI	GTCTC	3 cut(s)	13, 312, 771
BfaI	CTAG	2 cut(s)	6, 506
BfmI	CTRYAG	3 cut(s)	142, 740, 784
BfuAI	ACCTGC	1 cut(s)	634
BglII	AGATCT	1 cut(s)	261
Bme1390I	CCNGG	3 cut(s)	257, 691, 765
Bme18I	GGWCC	1 cut(s)	253
BmeT110I	CYCGRG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	253
BmrFI	CCNGG	3 cut(s)	257, 691, 765
BmsI	GCATC	5 cut(s)	492, 595, 615, 630, 663
BpiI	GAAGAC	1 cut(s)	163
BplI	GAGNNNNNCTC	2 cut(s)	649, 681
Bpu14I	TTCGAA	1 cut(s)	214
BpuEI	CTTGAG	1 cut(s)	327
BsaJI	CCNNGG	1 cut(s)	689
BsaWI	WCCGGW	1 cut(s)	184
BsaXI	ACNNNNNCTCC	2 cut(s)	660, 690
Bse118I	RCCGGY	1 cut(s)	514
Bse21I	CCTNAGG	1 cut(s)	165
Bse3DI	GCAATG	1 cut(s)	799
BseAI	TCCGGA	1 cut(s)	184
BseBI	CCWGG	3 cut(s)	257, 691, 765
BseDI	CCNNGG	1 cut(s)	689
BseGI	GGATG	3 cut(s)	181, 252, 610
BseMI	GCAATG	1 cut(s)	799
BseMII	CTCAG	1 cut(s)	156
BseRI	GAGGAG	1 cut(s)	497
BseSI	GKGCMC	1 cut(s)	514
BseXI	GCAGC	9 cut(s)	115, 505, 592, 595, 598, 673, 754, 798, 801
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	81, 805
BsiHKAI	GWGCWC	2 cut(s)	474, 514
BsiHKCI	CYCGRG	1 cut(s)	291
BsiSI	CCGG	3 cut(s)	185, 224, 515
BslFI	GGGAC	1 cut(s)	132
BsmAI	GTCTC	3 cut(s)	13, 312, 771
BsmFI	GGGAC	1 cut(s)	132
BsmI	GAATGC	1 cut(s)	550
BsnI	GGCC	2 cut(s)	81, 805
BsoBI	CYCGRG	1 cut(s)	291
Bsp119I	TTCGAA	1 cut(s)	214
Bsp1286I	GDGCHC	2 cut(s)	474, 514
Bsp13I	TCCGGA	1 cut(s)	184
Bsp143I	GATC	5 cut(s)	102, 135, 261, 300, 397
BspACI	CCGC	4 cut(s)	131, 650, 722, 746
BspANI	GGCC	2 cut(s)	81, 805
BspCNI	CTCAG	1 cut(s)	157
BspEI	TCCGGA	1 cut(s)	184
BspHI	TCATGA	1 cut(s)	705
BspMAI	CTGCAG	2 cut(s)	744, 788
BspMI	ACCTGC	1 cut(s)	634
BspPI	GGATC	1 cut(s)	405
BspQI	GCTCTTC	1 cut(s)	462
BspT104I	TTCGAA	1 cut(s)	214
BsrDI	GCAATG	1 cut(s)	799
BsrFI	RCCGGY	1 cut(s)	514
BssAI	RCCGGY	1 cut(s)	514
BssECI	CCNNGG	1 cut(s)	689
BssMI	GATC	5 cut(s)	102, 135, 261, 300, 397
Bst2UI	CCWGG	3 cut(s)	257, 691, 765
Bst4CI	ACNGT	1 cut(s)	146
Bst6I	CTCTTC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	518
BstBI	TTCGAA	1 cut(s)	214
BstC8I	GCNNGC	1 cut(s)	459
BstDEI	CTNAG	1 cut(s)	165
BstF5I	GGATG	3 cut(s)	181, 252, 610
BstHHI	GCGC	1 cut(s)	655
BstKTI	GATC	5 cut(s)	105, 138, 264, 303, 400
BstMAI	GTCTC	3 cut(s)	13, 312, 771
BstMBI	GATC	5 cut(s)	102, 135, 261, 300, 397
BstMWI	GCNNNNNNNGC	5 cut(s)	518, 586, 661, 682, 754
BstNI	CCWGG	3 cut(s)	257, 691, 765
BstSCI	CCNGG	3 cut(s)	255, 689, 763
BstSFI	CTRYAG	3 cut(s)	142, 740, 784
BstSLI	GKGCMC	1 cut(s)	514
BstV1I	GCAGC	9 cut(s)	115, 505, 592, 595, 598, 673, 754, 798, 801
BstV2I	GAAGAC	1 cut(s)	163
BstX2I	RGATCY	2 cut(s)	261, 397
BstYI	RGATCY	2 cut(s)	261, 397
Bsu36I	CCTNAGG	1 cut(s)	165
BsuRI	GGCC	2 cut(s)	81, 805
BtgZI	GCGATG	2 cut(s)	702, 738
BtsCI	GGATG	3 cut(s)	181, 252, 610
BveI	ACCTGC	1 cut(s)	634
Cac8I	GCNNGC	1 cut(s)	459
CciI	TCATGA	1 cut(s)	705
CfoI	GCGC	1 cut(s)	655
Cfr10I	RCCGGY	1 cut(s)	514
Cfr13I	GGNCC	1 cut(s)	253
CviAII	CATG	3 cut(s)	697, 706, 801
DdeI	CTNAG	1 cut(s)	165
DpnI	GATC	5 cut(s)	104, 137, 263, 302, 399
DpnII	GATC	5 cut(s)	102, 135, 261, 300, 397
EaeI	YGGCCR	1 cut(s)	803
Eam1104I	CTCTTC	1 cut(s)	462
EarI	CTCTTC	1 cut(s)	462
Eco32I	GATATC	1 cut(s)	448
Eco47I	GGWCC	1 cut(s)	253
Eco57I	CTGAAG	1 cut(s)	107
Eco81I	CCTNAGG	1 cut(s)	165
Eco88I	CYCGRG	1 cut(s)	291
EcoRII	CCWGG	3 cut(s)	255, 689, 763
EcoRV	GATATC	1 cut(s)	448
EcoT22I	ATGCAT	2 cut(s)	550, 630
FaeI	CATG	3 cut(s)	700, 709, 804
FaiI	YATR	9 cut(s)	32, 221, 350, 405, 419, 617, 698, 707, 802
FaqI	GGGAC	1 cut(s)	132
FatI	CATG	3 cut(s)	696, 705, 800
FokI	GGATG	3 cut(s)	168, 259, 617
FspBI	CTAG	2 cut(s)	6, 506
GlaI	GCGC	1 cut(s)	654
HaeIII	GGCC	2 cut(s)	81, 805
HapII	CCGG	3 cut(s)	185, 224, 515
HhaI	GCGC	1 cut(s)	655
Hin1II	CATG	3 cut(s)	700, 709, 804
Hin6I	GCGC	1 cut(s)	653
HinP1I	GCGC	1 cut(s)	653
HinfI	GANTC	1 cut(s)	709
HpaII	CCGG	3 cut(s)	185, 224, 515
HphI	GGTGA	2 cut(s)	28, 97
Hpy166II	GTNNAC	1 cut(s)	512
Hpy188I	TCNGA	3 cut(s)	87, 305, 776
Hpy188III	TCNNGA	4 cut(s)	48, 185, 326, 706
Hpy8I	GTNNAC	1 cut(s)	512
HpyAV	CCTTC	3 cut(s)	92, 237, 388
HpyCH4III	ACNGT	1 cut(s)	146
HpyCH4V	TGCA	8 cut(s)	25, 512, 548, 608, 628, 643, 742, 786
HpyF10VI	GCNNNNNNNGC	5 cut(s)	518, 586, 661, 682, 754
HpyF3I	CTNAG	1 cut(s)	165
Hsp92II	CATG	3 cut(s)	700, 709, 804
HspAI	GCGC	1 cut(s)	653
Kpn2I	TCCGGA	1 cut(s)	184
Kzo9I	GATC	5 cut(s)	102, 135, 261, 300, 397
LguI	GCTCTTC	1 cut(s)	462
LmnI	GCTCC	5 cut(s)	526, 577, 619, 681, 767
Lsp1109I	GCAGC	9 cut(s)	115, 505, 592, 595, 598, 673, 754, 798, 801
LweI	GCATC	5 cut(s)	492, 595, 615, 630, 663
MaeI	CTAG	2 cut(s)	6, 506
MaeIII	GTNAC	1 cut(s)	116
MalI	GATC	5 cut(s)	104, 137, 263, 302, 399
MboI	GATC	5 cut(s)	102, 135, 261, 300, 397
MboII	GAAGA	6 cut(s)	21, 85, 100, 103, 163, 479
MflI	RGATCY	2 cut(s)	261, 397
MhlI	GDGCHC	2 cut(s)	474, 514
MlsI	TGGCCA	1 cut(s)	805
MluCI	AATT	1 cut(s)	811
MluNI	TGGCCA	1 cut(s)	805
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	9 cut(s)	160, 201, 419, 475, 534, 550, 563, 651, 675
Mox20I	TGGCCA	1 cut(s)	805
Mph1103I	ATGCAT	2 cut(s)	550, 630
MroI	TCCGGA	1 cut(s)	184
MscI	TGGCCA	1 cut(s)	805
MseI	TTAA	3 cut(s)	123, 362, 495
Msp20I	TGGCCA	1 cut(s)	805
MspI	CCGG	3 cut(s)	185, 224, 515
MspR9I	CCNGG	3 cut(s)	257, 691, 765
Mva1269I	GAATGC	1 cut(s)	550
MvaI	CCWGG	3 cut(s)	257, 691, 765
MwoI	GCNNNNNNNGC	5 cut(s)	518, 586, 661, 682, 754
NdeII	GATC	5 cut(s)	102, 135, 261, 300, 397
NlaIII	CATG	3 cut(s)	700, 709, 804
NmeAIII	GCCGAG	1 cut(s)	184
NmuCI	GTSAC	1 cut(s)	116
NsiI	ATGCAT	2 cut(s)	550, 630
NspV	TTCGAA	1 cut(s)	214
PagI	TCATGA	1 cut(s)	705
PciSI	GCTCTTC	1 cut(s)	462
PctI	GAATGC	1 cut(s)	550
PfeI	GAWTC	1 cut(s)	709
PsiI	TTATAA	1 cut(s)	419
Psp6I	CCWGG	3 cut(s)	255, 689, 763
PspGI	CCWGG	3 cut(s)	255, 689, 763
PspPI	GGNCC	1 cut(s)	253
PstI	CTGCAG	2 cut(s)	744, 788
PsuI	RGATCY	2 cut(s)	261, 397
SapI	GCTCTTC	1 cut(s)	462
SaqAI	TTAA	3 cut(s)	123, 362, 495
Sau3AI	GATC	5 cut(s)	102, 135, 261, 300, 397
Sau96I	GGNCC	1 cut(s)	253
ScrFI	CCNGG	3 cut(s)	257, 691, 765
SduI	GDGCHC	2 cut(s)	474, 514
SetI	ASST	9 cut(s)	18, 171, 212, 387, 411, 495, 511, 531, 648
SfaNI	GCATC	5 cut(s)	492, 595, 615, 630, 663
SfcI	CTRYAG	3 cut(s)	142, 740, 784
SfuI	TTCGAA	1 cut(s)	214
SinI	GGWCC	1 cut(s)	253
SmlI	CTYRAG	1 cut(s)	342
SmoI	CTYRAG	1 cut(s)	342
Sse9I	AATT	1 cut(s)	811
SsiI	CCGC	4 cut(s)	131, 650, 722, 746
SspMI	CTAG	2 cut(s)	6, 506
StyD4I	CCNGG	3 cut(s)	255, 689, 763
TaaI	ACNGT	1 cut(s)	146
TaqI	TCGA	3 cut(s)	214, 354, 423
TasI	AATT	1 cut(s)	811
TauI	GCSGC	4 cut(s)	134, 653, 724, 748
TfiI	GAWTC	1 cut(s)	709
Tru1I	TTAA	3 cut(s)	123, 362, 495
Tru9I	TTAA	3 cut(s)	123, 362, 495
TseFI	GTSAC	1 cut(s)	116
TseI	GCWGC	9 cut(s)	128, 518, 580, 583, 586, 661, 742, 786, 789
Tsp45I	GTSAC	1 cut(s)	116
TspDTI	ATGAA	3 cut(s)	110, 685, 722
TspGWI	ACGGA	1 cut(s)	812
VneI	GTGCAC	1 cut(s)	510
VpaK11BI	GGWCC	1 cut(s)	253
XspI	CTAG	2 cut(s)	6, 506
Zsp2I	ATGCAT	2 cut(s)	550, 630

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.