Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002908.1

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Forward (+)

92507 .. 92900

Gene Structure 394 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002908.1_g000022.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 261 bp

atgatcgaatcggccttgtctctcaaagttggcgaggagagagaattcgctacctatggcttgaagaagaagctcctcaagtctggaaccggctgggaaatcgtggagttctgcgatgaagccaccgatgaagagatggaggagacagtcactgttaagattggtgagggtggagtagtgaaggggttggagcatggcattatcactatgaagaagggagaattatactcattcggaatggtgtcgttgggcttgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_8

Protein Analysis

86

Amino Acids

9.44

Weight (kDa)

4.87

Isoelectric Point (pI)

15.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	44
AgsI	TTSAA	1 cut(s)	64
AluBI	AGCT	1 cut(s)	73
AluI	AGCT	1 cut(s)	73
Alw26I	GTCTC	2 cut(s)	24, 137
AlwNI	CAGNNNCTG	1 cut(s)	152
AoxI	GGCC	1 cut(s)	12
ApoI	RAATTY	1 cut(s)	44
AsuHPI	GGTGA	1 cut(s)	176
BccI	CCATC	1 cut(s)	130
BcoDI	GTCTC	2 cut(s)	24, 137
BmiI	GGNNCC	1 cut(s)	88
BpuEI	CTTGAG	1 cut(s)	62
Bse118I	RCCGGY	1 cut(s)	89
BseRI	GAGGAG	3 cut(s)	50, 65, 155
BseYI	CCCAGC	1 cut(s)	93
BshFI	GGCC	1 cut(s)	14
BsiSI	CCGG	1 cut(s)	90
BsmAI	GTCTC	2 cut(s)	24, 137
BsnI	GGCC	1 cut(s)	14
Bsp143I	GATC	1 cut(s)	3
BspANI	GGCC	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	88
BsrFI	RCCGGY	1 cut(s)	89
BssAI	RCCGGY	1 cut(s)	89
BssMI	GATC	1 cut(s)	3
Bst4CI	ACNGT	2 cut(s)	148, 154
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	1 cut(s)	254
BstKTI	GATC	1 cut(s)	6
BstMAI	GTCTC	2 cut(s)	24, 137
BstMBI	GATC	1 cut(s)	3
BsuRI	GGCC	1 cut(s)	14
BtgZI	GCGATG	1 cut(s)	129
BtsIMutI	CAGTG	1 cut(s)	150
Cac8I	GCNNGC	1 cut(s)	254
CaiI	CAGNNNCTG	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	89
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	6 cut(s)	14, 60, 73, 93, 122, 252
CviKI_1	RGCY	6 cut(s)	14, 60, 73, 93, 122, 252
DpnI	GATC	1 cut(s)	5
DpnII	GATC	1 cut(s)	3
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
EcoRI	GAATTC	1 cut(s)	44
FaeI	CATG	1 cut(s)	197
FaiI	YATR	4 cut(s)	57, 195, 209, 226
FatI	CATG	1 cut(s)	193
GsaI	CCCAGC	1 cut(s)	97
HaeIII	GGCC	1 cut(s)	14
HapII	CCGG	1 cut(s)	90
Hin1II	CATG	1 cut(s)	197
HinfI	GANTC	1 cut(s)	8
HpaII	CCGG	1 cut(s)	90
HphI	GGTGA	1 cut(s)	176
Hpy188I	TCNGA	1 cut(s)	236
Hpy188III	TCNNGA	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	175, 208
HpyCH4III	ACNGT	2 cut(s)	148, 154
HpyCH4V	TGCA	1 cut(s)	256
Hsp92II	CATG	1 cut(s)	197
Kzo9I	GATC	1 cut(s)	3
LmnI	GCTCC	2 cut(s)	78, 190
LpnPI	CCDG	3 cut(s)	69, 79, 103
MaeIII	GTNAC	1 cut(s)	148
MalI	GATC	1 cut(s)	5
MboI	GATC	1 cut(s)	3
MboII	GAAGA	4 cut(s)	76, 79, 143, 223
MluCI	AATT	2 cut(s)	44, 221
MmeI	TCCRAC	1 cut(s)	168
MnlI	CCTC	4 cut(s)	28, 86, 133, 160
MseI	TTAA	1 cut(s)	156
MspI	CCGG	1 cut(s)	90
NdeII	GATC	1 cut(s)	3
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	1 cut(s)	88
NmuCI	GTSAC	1 cut(s)	148
PfeI	GAWTC	1 cut(s)	8
PspFI	CCCAGC	1 cut(s)	93
PspN4I	GGNNCC	1 cut(s)	88
PstNI	CAGNNNCTG	1 cut(s)	152
SaqAI	TTAA	1 cut(s)	156
Sau3AI	GATC	1 cut(s)	3
SetI	ASST	2 cut(s)	56, 75
SgeI	CNNG	9 cut(s)	28, 46, 73, 91, 96, 102, 106, 115, 206
SmlI	CTYRAG	1 cut(s)	77
SmoI	CTYRAG	1 cut(s)	77
Sse9I	AATT	2 cut(s)	44, 221
TaaI	ACNGT	2 cut(s)	148, 154
TaqI	TCGA	1 cut(s)	6
TasI	AATT	2 cut(s)	44, 221
TfiI	GAWTC	1 cut(s)	8
Tru1I	TTAA	1 cut(s)	156
Tru9I	TTAA	1 cut(s)	156
TscAI	CASTG	1 cut(s)	157
TseFI	GTSAC	1 cut(s)	148
Tsp45I	GTSAC	1 cut(s)	148
TspDTI	ATGAA	3 cut(s)	132, 144, 224
TspRI	CASTG	1 cut(s)	157
XapI	RAATTY	1 cut(s)	44

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.