Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0028480.1

Orthogroup ID

OG0003627

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 347

Gene Structure 346 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0028480.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atggacgacgacttcgacatggcagcgcccggcggcgagatgatggacgactttgacctccccgacgagggccccgttctcaaggttggcgaggagaaggagatcggaaagcagggcttgaagaagaagctcctcaaggaaggtgaagactgggaaacgcccaagagcggcgacgaggttgaagtacactacactgggactttgctggacgggactcagttcgattcgagccgcgatagg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000413 GO:0003674 GO:0003755 GO:0003824 GO:0005488 GO:0005527 GO:0005528 GO:0006457 GO:0006464 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009408 GO:0009628 GO:0009987 GO:0010286 GO:0016853 GO:0016859 GO:0018193 GO:0018208 GO:0019538 GO:0033554 GO:0034605 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0050896 GO:0051716 GO:0061077 GO:0070370 GO:0071704 GO:0097159 GO:0140096 GO:1901363 GO:1901564

KEGG Pathways

Metabolic & Signaling

ko04915 map04915

Pfam Domains

Protein Families

FKBP_C TPR_1 TPR_2 TPR_8

Protein Analysis

80

Amino Acids

8.92

Weight (kDa)

4.2

Isoelectric Point (pI)

28.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003627)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G58450
fragaria_vesca	FvH4_2g32840 FvH4_2g32840 FvH4_2g32840 FvH4_2g32840
malus_domestica	MD02G1098400.v1.1 MD15G1067100.v1.1
prunus_persica	Prupe.1G420900_v2.0.a1
pyrus_communis	pycom04g01900 pycom15g06360
rosa_chinensis	RchiOBHm_Chr6g0254891 RchiOBHm_Chr6g0309861
rosa_laevigata	RLG00000010529 RLG00000033960
rosa_multiflora	Rmu_co8350909.1_g000001 Rmu_sc0001554.1_g000012 Rmu_sc0002908.1_g000022 Rmu_sc0021683.1_g000001 Rmu_sc0028480.1_g000001 Rmu_sc0035432.1_g000001 Rmu_ssc0000373.1_g000001
rosa_roxburghii	Rroxscaffold_2G00116390 Rroxscaffold_7G00159100 Rroxscaffold_7G00210070 Rroxscaffold_7G00210620
rosa_rugosa	Rorug06G0184100 Rorug06G0375400
rosa_samantha	Rh4DG166900 Rh5DG417300 Rh6AG488900 Rh6BG498400 Rh6CG269800 Rh6CG503200 Rh6DG489400
rosa_wichuraiana	Rw6G042570

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	168
AccII	CGCG	1 cut(s)	234
AciI	CCGC	3 cut(s)	33, 168, 232
AfaI	GTAC	1 cut(s)	186
AfiI	CCNNNNNNNGG	3 cut(s)	67, 68, 167
AgsI	TTSAA	2 cut(s)	121, 182
AluBI	AGCT	1 cut(s)	130
AluI	AGCT	1 cut(s)	130
AoxI	GGCC	1 cut(s)	70
ApaI	GGGCCC	1 cut(s)	74
ApeKI	GCWGC	1 cut(s)	23
ArsI	GACNNNNNNTTYG	1 cut(s)	28
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	2 cut(s)	70, 71
AsuC2I	CCSGG	1 cut(s)	30
AsuHPI	GGTGA	1 cut(s)	155
BaeGI	GKGCMC	1 cut(s)	74
BanII	GRGCYC	1 cut(s)	74
BbsI	GAAGAC	1 cut(s)	153
BbvI	GCAGC	1 cut(s)	35
BccI	CCATC	1 cut(s)	37
BcnI	CCSGG	1 cut(s)	30
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	4 cut(s)	24, 34, 169, 232
BlsI	GCNGC	4 cut(s)	25, 35, 170, 233
Bme1390I	CCNGG	1 cut(s)	30
BmgT120I	GGNCC	2 cut(s)	70, 71
BmiI	GGNNCC	2 cut(s)	72, 73
BmrFI	CCNGG	1 cut(s)	30
BmrI	ACTGGG	2 cut(s)	160, 204
BmuI	ACTGGG	2 cut(s)	160, 204
BpiI	GAAGAC	1 cut(s)	153
BpuEI	CTTGAG	2 cut(s)	65, 119
BpuMI	CCSGG	1 cut(s)	30
Bsc4I	CCNNNNNNNGG	3 cut(s)	67, 68, 167
Bse1I	ACTGG	2 cut(s)	155, 199
BseLI	CCNNNNNNNGG	3 cut(s)	67, 68, 167
BseMII	CTCAG	1 cut(s)	230
BseNI	ACTGG	2 cut(s)	155, 199
BseRI	GAGGAG	2 cut(s)	107, 122
BseSI	GKGCMC	1 cut(s)	74
BseXI	GCAGC	1 cut(s)	35
Bsh1236I	CGCG	1 cut(s)	234
BshFI	GGCC	1 cut(s)	72
BsiSI	CCGG	1 cut(s)	30
BslFI	GGGAC	2 cut(s)	211, 226
BslI	CCNNNNNNNGG	3 cut(s)	67, 68, 167
BsmFI	GGGAC	2 cut(s)	211, 226
BsnI	GGCC	1 cut(s)	72
Bsp120I	GGGCCC	1 cut(s)	70
Bsp1286I	GDGCHC	1 cut(s)	74
Bsp143I	GATC	1 cut(s)	102
BspACI	CCGC	3 cut(s)	33, 168, 232
BspANI	GGCC	1 cut(s)	72
BspCNI	CTCAG	1 cut(s)	229
BspFNI	CGCG	1 cut(s)	234
BspLI	GGNNCC	2 cut(s)	72, 73
BsrBI	CCGCTC	1 cut(s)	168
BsrI	ACTGG	2 cut(s)	155, 199
BssMI	GATC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	216
BstFNI	CGCG	1 cut(s)	234
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	1 cut(s)	105
BstMBI	GATC	1 cut(s)	102
BstSCI	CCNGG	1 cut(s)	28
BstSLI	GKGCMC	1 cut(s)	74
BstUI	CGCG	1 cut(s)	234
BstV1I	GCAGC	1 cut(s)	35
BstV2I	GAAGAC	1 cut(s)	153
BsuRI	GGCC	1 cut(s)	72
BtsIMutI	CAGTG	1 cut(s)	192
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	2 cut(s)	70, 71
Csp6I	GTAC	1 cut(s)	185
CviAII	CATG	1 cut(s)	19
CviJI	RGCY	4 cut(s)	72, 117, 130, 231
CviKI_1	RGCY	4 cut(s)	72, 117, 130, 231
CviQI	GTAC	1 cut(s)	185
DdeI	CTNAG	1 cut(s)	216
DpnI	GATC	1 cut(s)	104
DpnII	GATC	1 cut(s)	102
Eco24I	GRGCYC	1 cut(s)	74
EcoO109I	RGGNCCY	2 cut(s)	70, 71
EcoT38I	GRGCYC	1 cut(s)	74
FaeI	CATG	1 cut(s)	22
FaiI	YATR	1 cut(s)	20
FalI	AAGNNNNNCTT	2 cut(s)	101, 133
FaqI	GGGAC	2 cut(s)	211, 226
FatI	CATG	1 cut(s)	18
Fnu4HI	GCNGC	4 cut(s)	24, 34, 169, 232
FriOI	GRGCYC	1 cut(s)	74
Fsp4HI	GCNGC	4 cut(s)	24, 34, 169, 232
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	4 cut(s)	24, 34, 169, 232
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	1 cut(s)	72
HapII	CCGG	1 cut(s)	30
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	1 cut(s)	22
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HinfI	GANTC	2 cut(s)	214, 224
HpaII	CCGG	1 cut(s)	30
HphI	GGTGA	1 cut(s)	155
Hpy166II	GTNNAC	1 cut(s)	187
Hpy188I	TCNGA	1 cut(s)	107
Hpy8I	GTNNAC	1 cut(s)	187
Hpy99I	CGWCG	3 cut(s)	11, 68, 176
HpyAV	CCTTC	2 cut(s)	91, 134
HpyF3I	CTNAG	1 cut(s)	216
Hsp92II	CATG	1 cut(s)	22
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	1 cut(s)	102
LmnI	GCTCC	1 cut(s)	135
LpnPI	CCDG	5 cut(s)	43, 98, 136, 180, 191
Lsp1109I	GCAGC	1 cut(s)	35
MalI	GATC	1 cut(s)	104
MbiI	CCGCTC	1 cut(s)	168
MboI	GATC	1 cut(s)	102
MboII	GAAGA	3 cut(s)	133, 136, 158
MhlI	GDGCHC	1 cut(s)	74
MlyI	GAGTC	1 cut(s)	208
MnlI	CCTC	5 cut(s)	61, 68, 85, 143, 169
MspI	CCGG	1 cut(s)	30
MspR9I	CCNGG	1 cut(s)	30
MvnI	CGCG	1 cut(s)	234
NciI	CCSGG	1 cut(s)	30
NdeII	GATC	1 cut(s)	102
NlaIII	CATG	1 cut(s)	22
NlaIV	GGNNCC	2 cut(s)	72, 73
PcsI	WCGNNNNNNNCGW	2 cut(s)	12, 72
PfeI	GAWTC	1 cut(s)	224
PkrI	GCNGC	4 cut(s)	25, 35, 170, 233
PleI	GAGTC	1 cut(s)	208
PpsI	GAGTC	1 cut(s)	208
PspN4I	GGNNCC	2 cut(s)	72, 73
PspOMI	GGGCCC	1 cut(s)	70
PspPI	GGNCC	2 cut(s)	70, 71
RsaI	GTAC	1 cut(s)	186
RsaNI	GTAC	1 cut(s)	185
SatI	GCNGC	4 cut(s)	24, 34, 169, 232
Sau3AI	GATC	1 cut(s)	102
Sau96I	GGNCC	2 cut(s)	70, 71
SchI	GAGTC	1 cut(s)	208
ScrFI	CCNGG	1 cut(s)	30
SduI	GDGCHC	1 cut(s)	74
SetI	ASST	5 cut(s)	60, 87, 132, 145, 180
SmlI	CTYRAG	2 cut(s)	80, 134
SmoI	CTYRAG	2 cut(s)	80, 134
SsiI	CCGC	3 cut(s)	33, 168, 232
StyD4I	CCNGG	1 cut(s)	28
TaqI	TCGA	3 cut(s)	15, 222, 227
TatI	WGTACW	1 cut(s)	184
TauI	GCSGC	3 cut(s)	36, 171, 234
TfiI	GAWTC	1 cut(s)	224
TscAI	CASTG	1 cut(s)	199
TseI	GCWGC	1 cut(s)	23
TspRI	CASTG	1 cut(s)	199

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.